Upload your model to compare it (Help):
Compute 3D-Jury using:
first one all
model(s) per server
similarity cutoff:
Display:
  psipred  
  sam-t02-dssp  
  sam-t02-stride  
 
MDLNRMGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDELPAKVKEKLGVK
---------EEEEEEE---EEEE-------EEEEEEEEEEEE-----EEEEEEE---------EEEEEE-----EEEEEEE-HHH--HHHHHHH---
---E--TT-EEEEEEEEEEEEEEEETTSS-EEEEEEEEEEEE-TTS-EEEEEEE-SS---TT-EEEEEETT-SEEEEEEEE-GGG--HHHHHHHT--
--TTETTTEEEEEEEEEEEEEEEE-TTTTEEEEEEEEEEEEETTTT-EEEEEEE-TTTTTTTEEEEEEEETTEEEEEGGG-TGGT--HHHHHHH---
 
[pir]
[pir]
[pir]
 
 
3D-Jury
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
Model Jscore Rscore Fssp Scop PDB Hit 
MDLNRMGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDELPAKVKEKLGVK
 [2D][mqap]
FUGU_04
 		26.83 2.38 211.3.1 b.34.13 
.....................................ATVKFKYKGEEKEVDISKIKKVWRGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQ                                     444410012331022111011322212033122031211443103555567666662222
 [pir][pdb][model]
FFA3_03
 		26.67 -8.3 211.3.1 b.34.13 
.........................................FKYKGEEKEVDISKIKKVRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQ                                         22244541010000201323355476545231100531025334447666884333
 [pir][pdb][model]
FFA3_05
 		26.67 -8.2 211.3.1 b.34.13 
.........................................FKYKGEEKQVDISKIKKVRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLAKQ                                         22243442244312201434022144323041211423212244445444774333
 [pir][pdb][model]
FUGU_01
 		26.50 3.55 211.3.1 b.34.13 
....................................MVKVKFKYKGEEKEVDTSKIKKVWRGKMVSFTYDDNG.KTGRGAVSEKDAPKELLDMLARA                                    0004455544113522202200010412147656310 22644204455567666884444
 [pir][pdb][model]
3DPS_01
 		24.67 4.31 211.3.1 b.34.13 
..................................ATVKFK.Y..KGEEKEVDISKIKKVRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLQKK                                  444454 5  44330033212201322112144323041100664313555545444452222
 [pir][pdb][model]
BASI_03
 		23.67 18.96 211.3.1 b.34.13 
............................................KGEEKEVDISKIKKVRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQML                                            55541010001321122355476545231100200133355567667777
 [pir][pdb][model]
FFA3_02
 		23.67 -8.5 b.34.13 
.........................................FKYKGEELQVDISKIKKVRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQ                                         11144432232210232121101114467452214021101145566556452111
 [pir][pdb][model]
FFA3_01
 		23.17 -8.7 b.34.13 
.........................................FKYKGEEKQVDISKIKKVRVGKMISATYDEGGGKTGRGAVSEKDAPKELLQMLEKQ                                         66644220111111211001132204566331121200123110101000231000
 [pir][pdb][model]
ST02_04
 		23.00 6.9223 b.34.13 
..............................ATVKFKYK.......GEEKQVDISKKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEQK                              22222343       3454354332104666412134355231124022324444455455241000
 [pir][pdb][model]
BASI_01
 		23.00 20.35 b.34.13 
.........................................FKYKGEEKEVDTSKKKVWRVGKMVSFTY-DDNGKTGRGAVSEKDAPKELLD                                         6666544213322302000002210321 2522222022355556565555
 [pir][pdb][model]
FFA3_04
 		22.50 -8.2 211.3.1 b.34.13 
.........................................FKYKGEEKQVDISKIKKVRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQ                                         33365442211111021100001026656331103021101022225012000222
 [pir][pdb][model]
MGTH_04
 		11.33 25.419 
IPLKP..NTTYWAKFDSKPVQYHLKDANNT....YVQHILNFNETDWYKQLLFTTPDVFGSTPQLALWKGDTSKVY.LVEV................11123  34321356402122114335433    069751466655654343222212322210131110243466 4333                
 [pir][pdb][model]
MGTH_01
 		11.33 26.33 
VALKP..NTTYWGKFTAKPVQYHLKDANNT....YVQNILRFTETDWYKQVVFTTPDAFGSDPEFVLWKDDASNADNITLVE...............55544  45442023402102320245431    078630476644440121244223324212351113443331357777               
 [pir][pdb][model]
BASI_04
 		11.00 18.87 50.1.1 d.3.1 
..............VSLKNMNKAERLTFGESLMTHAMTFTAVDQDGAFTRVENSWGEDHGHKGYLCMTDEWFSEYVYEVVVDRKHVPEEVLAVLE              222222211111422010112224622333622211333132112100101111012522146356211012123442333
 [pir][pdb][model]
BASI_02
 		11.00 19.26 d.3.1 
.....................KASRIRYHESLMTHAMLITGCDETSKLPLVENSWGKDSGKDGLYVMTQKYFEEYCFQIVVDINELPKELASKF                     1113354412112321231033344443243322102100000242020242323242100034444444333
 [pir][pdb][model]
FFA3_06
 		9.33 -7.6 d.153.1 
................................SEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI...                                  111131022253441201200311155022234110242232020122320111011333   
 [pir][pdb][model]
FFA3_08
 		9.33 -7.2 d.153.1 
................................SEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKI...                                      11122244663301200311100421120334243353001202212211011444   
 [pir][pdb][model]
FFA3_07
 		9.17 -7.4 194.1.1 d.153.1 
................................MAYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI...                                       2222253441024420311121022453010243353120100012101010222   
 [pir][pdb][model]
FFA3_09
 		9.17 -7.2 d.153.1 
................................RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV...                                44447311022253441221032202233245675210243353002201122211012444   
 [pir][pdb][model]
 
 

3D-Jury scores models by their similarity to other models. Similarity is computed as the number of C-alpha atoms within 3.5A after superposition of the models, and is set to 0 if it drops below the specified cutoff. The 3D-Jury score (Jscore) is the sum of the number of proximal C-alpha atoms in the superpositioned models divided by the number of superpositions + 1. Similarity is evaluated only for the specified models of the selected servers. During evaluation, from each server the first (top) model, the one most similar model or all models are used. When default settings are applied and results for most servers are available, the 3D-Jury score corresponds roughly to the number of C-alpha atoms of the model within 3.5A from the native structure. If a particular model (links in the Model column) is selected, the scores of all other models represent the number of their superposed C-alpha atoms within 3.5A and these structurally aligned proximal residues are marked with gray background. Silver background in the Jscore column indicates that the model was not included in 3D-Jury calculations. Jscore values less than 50 are coloured gray.

Legend:

Model: model id
Jscore: 3D-Jury score
Jsim: number of proximal residue pairs between model on line and first (base) model. Jscore of base model is shown in green.
Rscore: raw score returned by server
Fssp: fssp mapping of the hit
Scop: scop mapping of the hit
Hit: hit name
Protein sequence: helix=
RED
, strand=
BLUE
, insertion=
BLACK
.

More on 3D-Jury scores:

Kaján L, Rychlewski L.
Evaluation of 3D-Jury on CASP7 models.
BMC Bioinformatics. 2007 Aug 21;8:304.

Buttons [2D] and [mqap] enable switching between alignment view and mqap (model quality alignment program) view. The latter shows Verify3D values multiplied by 10 for each residue. Negative values are coloured red.

Contact us if you would like us to help you with the 3D-model or with the interpretation of Meta Server results!

BioInfoBank Institute, Protein Structure Prediction Meta Server