Domain Definition for 125 Targets (updated on Nov 25, 2008 by shuoyong shi) _______________________________________________________________________________________________________________________ Domains are marked by "_" followed by a domain number and preceded by a target name; "s" after the domain number denotes a swapped domain. Whole chains (no "_" in name) are given to show the residue range and mapping between target and PDB. * T0409_1 and T0435_1 are domains with swap segment removed; T0393_2s,T0409_1s and T0435_1s are domains with a swap formed by segments from both chains A and B (domain-swapped); * T0459_1 is a domain with swap segment removed; T0459_1s domain is a swap of chain A with a symmetry mate (asymmetric unit does not contain chain B, this chain was generated by crystallographic symmetry); * T0497_1 is a domain with swap segment removed; T0497_1s domain is a swap of chain A with a symmetry mate of chain C (asymmetric unit contains this chain, but chain C in swap was generated by crystallographic symmetry); * The only chains that really need to be evaluated as domains are: T0397, T0409, T0416, T0419, T0429, T0443, T0457, T0462, T0472, T0478, T0487, T0496, T0501, T0504, T0510, as for these targets server predictions for whole chains are much inferior to individual domain predictions. Only these targets are evaluated as domains in our combined domain evaluation tables. Other targets are evaluated as whole chains in combined domain evaluation tables, thus these targets are considered to be single-domain proteins for evaluation. Although some of these targets are multi-domain proteins evolutionarily, domains do not move relatively to each other, are of the same prediction difficulty and server predictions are similar for whole chains and domains. Nevertheless, we compute evaluation scores on all domains shown in this table, and these scores are available from individual target pages. _______________________________________________________________________________________________________________________ ID Type Category Range in target(PDB modified PDB chain Range in PDB to match the target sequence) T0387 Human/Server CM_easy 2-84 2vsp A 2-84 T0388 Server CM_easy 1-174 3cyn A 36-209 T0388_1 Server CM_easy 9-174 3cyn A 44-209 T0389 Human/Server CM_medium 1-134 2vsw A 5-138 T0390 Server CM_easy 29-160 3czu B 18-149 T0391 Human/Server CM_hard 14-154 3d89 A 14-154 T0391_1 Human/Server CM_medium 14-54,118-154 3d89 A 14-54,118-154 T0391_2 Human/Server CM_medium 55-117 3d89 A 55-117 T0392 Server CM_medium 8-104 2vsv A -15-594 T0392_1 Server CM_easy 24-104 2vsv A 514-594 T0393 Human/Server CM_hard 4-263 3d1l A 4-263 T0393_1 Human/Server CM_medium 4-163 3d1l A 4-163 T0393_2 Human/Server CM_medium 164-263 3d1l A 164-263 T0393_2s Human/Server CM_hard 164-262 3d1l A,B A:164-182,B:183-262 T0394 Server CM_hard 1-269 3dcy A -4-264 T0395 Human/Server FR 1-304 n/a A 1-304 T0395_1 Human/Server CM_hard 1-197 n/a A 1-197 T0395_2 Human/Server FR 198-304 n/a A 198-304 T0396 Human/Server CM_easy 3-104 n/a A 3-104 T0397 Human/Server FR 1-150 3d4r A 1-150 T0397_1 Human/Server FM 1-82 3d4r A 1-82 T0397_2 Human/Server CM_medium 83-150 3d4r A 83-150 T0398 Server CM_easy 1-291 3d4o A 1-291 T0398_1 Server CM_easy 1-128,273-291 3d4o A 1-128,273-291 T0398_2 Server CM_easy 129-272 3d4o A 129-272 T0399 Human/Server FR 45-206 3d4e A 45-206 T0399_1 Human/Server FR 45-128 3d4e A 45-128 T0399_2 Human/Server CM_medium 129-206 3d4e A 129-206 T0400 Server CM_easy 2-161 3d8p A 2-161 T0401 Human/Server CM_hard 1-132 3d5p A 1-132 T0401_1 Human/Server CM_hard 4-132 3d5p A 4-132 T0402 Server CM_medium 1-126 3db0 A 1-126 T0404 Server CM_easy 2-101 3dfe A 2-101 T0405 Human/Server FM 2-282 n/a A 2-282 T0405_1 Human/Server FR 2-73 n/a A 2-73 T0405_2 Human/Server FM 74-282 n/a A 74-182 T0406 Server CM_medium 1-150 3di5 A 1-150 T0407 Human/Server FR 22-363 3e38 A 22-363 T0407_1 Human/Server CM_hard 22-266 3e38 A 22-266 T0407_2 Human/Server FM 267-363 3e38 A 267-363 T0408 Server CM_medium 8-104 3d7i A 8-104 T0409 Human/Server FR 1-103 3d0f A 318-420 T0409_1 Human/Server CM_hard 32-103 3d0f A 349-420 T0409_1s Human/Server FR 1-103 3d0f A,B B:318-348,A:349-420 T0410 Server CM_easy 22-508 3d3l A 176-662 T0410_1 Server CM_easy 22-69,201-508 3d3l A 176-223,355-662 T0410_2 Server CM_easy 70-200 3d3l A 224-354 T0411 Human/Server CM_medium 20-139 3d1p A 20-139 T0412 Server CM_medium 1-176 3d3o A -2-173 T0413 Human/Server FR 8-299 3d0k A 5-296 T0414 Server CM_hard 3-140 3d0j A 0-137 T0414_1 Server CM_hard 9-140 3d0j A 6-137 T0415 Human/Server CM_medium 1-109 3d6w A 106-214 T0415_1 Human/Server CM_medium 1-54 3d6w A 106-159 T0415_2 Human/Server CM_easy 55-109 3d6w A 160-214 T0416 Server CM_hard 6-315 3d3q A 6-315 T0416_1 Server CM_easy 6-114,194-315 3d3q A 6-114,194-315 T0416_2 Server FR 115-193 3d3q A 115-193 T0417 Human/Server CM_hard 26-184 3d3s A 1-159 T0418 Server CM_easy 2-211 3d6j A 2-211 T0418_1 Server CM_easy 2-16,86-211 3d6j A 2-16,86-211 T0418_2 Server CM_easy 17-85 3d6j A 17-85 T0419 Human/Server FM 1-496 3czp A 1-496 T0419_1 Human/Server FR 1-237 3czp A 1-237 T0419_2 Human/Server FR 255-496 3czp A 255-496 T0420 Server CM_hard 1-178 3d5n A 1-178 T0421 Human/Server FR 12-299 3czq A 12-299 T0422 Server CM_medium 57-357 3d8b A 374-674 T0422_1 Server CM_medium 57-250,340-357 3d8b A 374-567,657-674 T0422_2 Server CM_easy 251-339 3d8b A 568-656 T0423 Human/Server CM_easy 1-154 3d01 A 10-163 T0424 Server CM_medium 6-347 3d37 A 6-347 T0424_1 Server CM_easy 6-93 3d37 A 6-93 T0424_2 Server CM_medium 94-178 3d37 A 94-178 T0424_3 Server CM_medium 179-207,278-347 3d37 A 179-207,278-347 T0424_4 Server CM_medium 208-277 3d37 A 208-277 T0425 Human/Server CM_medium 1-181 3czx A 1-181 T0426 Server CM_easy 22-283 3da2 A 0-261 T0427 Human/Server CM_hard 1-422 3d3y A 1-422 T0427_1 Human/Server CM_hard 1-230 3d3y A 1-230 T0427_2 Human/Server CM_medium 231-422 3d3y A 231-422 T0428 Server CM_easy 20-248 3d8h A 20-248 T0428_1 Server CM_easy 20-107,172-248 3d8h A 20-107,172-248 T0428_2 Server CM_easy 108-171 3d8h A 108-171 T0429 Human/Server FR 20-176 3db3 A 127-283 T0429_1 Human/Server CM_hard 20-100 3db3 A 127-207 T0429_2 Human/Server FR 101-176 3db3 A 208-283 T0430 Server FR 29-357 3dlz A 470-798 T0430_1 Server FR 29-166 3dlz A 470-607 T0430_2 Server FR 167-357 3dlz A 608-798 T0431 Human/Server CM_medium 7-488 3dax A 24-505 T0432 Server CM_easy 1-130 3dai A 979-1108 T0433 Server CM_medium 1-199 3d7l A 1-199 T0434 Human/Server CM_hard 11-205 3dal A -10-186 T0434_1 Human/Server CM_hard 26-197 3dal A 7-178 T0435 Server CM_medium 4-141 3db5 A 4-141 T0435_1 Server CM_easy 14-141 3db5 A 14-141 T0435_1s Server CM_medium 4-13,14-141 3db5 A,B B:4-13,A:14-141 T0436 Server CM_hard 15-419 3d6k A 15-419 T0436_1 Server CM_medium 15-38,317-419 3d6k A 15-38,317-419 T0436_2 Server CM_hard 39-316 3d6k A 39-316 T0437 Human/Server CM_medium 20-99 2k3i A 22-101 T0438 Server CM_easy 2-430 3d3u A 2-430 T0438_1 Server CM_easy 2-185 3d3u A 2-185 T0438_2 Server CM_easy 186-430 3d3u A 186-430 T0440 Human/Server CM_medium 1-275 3dcp A 1-275 T0441 Server CM_medium 71-340 3d8u A 71-340 T0441_1 Server CM_medium 71-170,302-329 3d8u A 71-170,302-329 T0441_2 Server CM_easy 169-301,330-340 3d8u A 169-301,330-340 T0442 Server CM_easy 11-266 3db9 A 11-266 T0442_1 Server CM_easy 11-124,233-266 3db9 A 11-124,233-266 T0442_2 Server CM_easy 131-232 3db9 A 131-232 T0443 Human/Server FM 31-230 3dee A 31-230 T0443_1 Human/Server FR 31-116 3dee A 31-116 T0443_2 Human/Server FR 117-230 3dee A 117-230 T0444 Server CM_easy 34-316 2vux A 30-312 T0445 Server CM_medium 1-264 3dao A 1-264 T0445_1 Server CM_easy 1-81,190-264 3dao A 1-81,190-264 T0445_2 Server CM_medium 82-189 3dao A 82-189 T0446 Human/Server CM_hard 8-124 3dcx A 0-124 T0447 Server CM_easy 1-542 3do6 A 1-542 T0447_1 Server CM_easy 1-117,239-422 3do6 A 1-117,239-422 T0447_2 Server CM_easy 118-238 3do6 A 118-238 T0447_3 Server CM_easy 423-516 3do6 A 423-516 T0448 Server CM_medium 18-230 3dc7 A 18-230 T0449 Human/Server CM_hard 1-300 3dcd A 1-300 T0450 Server CM_easy 1-549 3da1 A 1-549 T0450_1 Server CM_easy 1-62,168-247,343-406 3da1 A 1-62,168-247,343-406 T0450_2 Server CM_easy 63-101,163-167 3da1 A 63-101,163-167 T0450_3 Server CM_easy 102-162 3da1 A 102-162 T0450_4 Server CM_easy 248-342 3da1 A 248-342 T0450_5 Server CM_easy 407-549 3da1 A 407-549 T0451 Human/Server CM_medium 1-133 3dmc A 1-133 T0452 Server CM_easy 1-324 3do5 A 1-324 T0452_1 Server CM_easy 1-144,304-324 3do5 A 1-144,304-324 T0452_2 Server CM_easy 145-303 3do5 A 145-303 T0453 Server CM_easy 5-91 3ded A 341-427 T0454 Human/Server CM_hard 5-196 3dew A 5-196 T0454_1 Human/Server CM_easy 5-56 3dew A 5-56 T0454_2 Human/Server CM_hard 57-196 3dew A 57-196 T0455 Server CM_easy 3-145 3ddv A 3-145 T0455_1 Server CM_easy 3-60 3ddv A 3-60 T0455_2 Server CM_easy 83-145 3ddv A 83-145 T0456 Server CM_medium 15-284 3dfa A -2-267 T0456_1 Server CM_medium 15-104 3dfa A -2-87 T0456_2 Server CM_easy 105-284 3dfa A 89-267 T0457 Human/Server FR 1-316 3dev A 1-316 T0457_1 Human/Server CM_hard 1-194 3dev A 1-194 T0457_2 Human/Server FR 195-316 3dev A 195-316 T0458 Server CM_easy 11-89 3dex A 11-89 T0459 Server CM_medium 1-109 3df8 A -2-106 T0459_1 Server CM_easy 26-109 3df8 A 23-106 T0459_1s Server CM_medium 1-109 3df8 A,B B:-2-22,A:23-106 T0460 Human/Server FR 1-103 2k4n A 1-103 T0461 Server CM_easy 16-177 3dh1 A 12-173 T0462 Human/Server FR 1-154 2k5i A 1-154 T0462_1 Human/Server CM_medium 1-75 2k5i A 1-75 T0462_2 Human/Server CM_medium 76-146 2k5i A 76-146 T0463 Server CM_medium 3-219 3dhn A 3-219 T0464 Human/Server CM_hard 16-88 2k5r A 16-88 T0465 Human/Server FM 7-137 3dfd A 7-137 T0465_1 Human/Server FR 21-137 3dfd A 21-137 T0466 Human/Server FR 14-108 2k5d A 14-108 T0467 Human/Server FR 8-94 2k5q A 8-94 T0468 Human/Server FR 11-109 2k5w A 11-109 T0469 Human/Server CM_medium 1-65 2k5e A 1-65 T0470 Server CM_easy 2-214 3djb A 2-214 T0470_1 Server CM_easy 2-100 3djb A 2-100 T0470_2 Server CM_easy 112-214 3djb A 112-214 T0471 Human/Server CM_hard 1-131 2k4m A 21-151 T0472 Server CM_hard 1-110 2k49 A 1-110 T0472_1 Server CM_easy 2-50,102-110 2k49 A 2-50,102-110 T0472_2 Server CM_easy 51-101 2k49 A 51-101 T0473 Human/Server CM_medium 1-68 2k53 A 1-68 T0474 Human/Server CM_easy 7-52 2k5j A 7-52 T0475 Server CM_medium 1-122 2k54 A 1-122 T0476 Human/Server FR 1-88 2k5c A 8-95 T0477 Server CM_medium 1-242 3dkp A 137-378 T0478 Server FM 4-267 3d19 A 11-274 T0478_1 Server FR 4-137 3d19 A 11-144 T0478_2 Server FR 138-267 3d19 A 145-274 T0479 Server CM_easy 6-130 3dkz A 39-163 T0480 Human/Server CM_medium 17-50 2k4x A 17-50 T0481 Server CM_medium 5-154 3dka A 5-154 T0482 Human/Server FR 1-107 2k4v A 4-110 T0483 Server CM_medium 9-293 3dls A 982-1266 T0483_1 Server CM_medium 9-110 3dls A 982-1083 T0483_2 Server CM_easy 111-293 3dls A 1084-1266 T0484 Human/Server CM_easy 13-26 2k5k A 13-26 T0485 Server CM_hard 1-218 3dlc A 1-218 T0485_1 Server CM_hard 5-216 3dlc A 5-216 T0486 Server CM_easy 32-287 2vx2 A 45-300 T0486_1 Server CM_easy 32-230 2vx2 A 45-243 T0486_2 Server CM_easy 231-287 2vx2 A 244-300 T0487 Human/Server FR 3-642 3dlb A 3-642 T0487_1 Human/Server CM_hard 3-11,310-318,467-642 3dlb A 3-11,310-318,467-642 T0487_2 Human/Server FR 12-25,97-176,266-309 3dlb A 12-25,97-176,266-309 T0487_3 Human/Server CM_hard 26-96 3dlb A 26-96 T0487_4 Human/Server FR 177-265 3dlb A 177-265 T0487_5 Human/Server CM_hard 319-466 3dlb A 319-466 T0488 Server CM_easy 1-95 2vwr A -1-428 T0488_1 Server CM_easy 1-90 2vwr A -1-423 T0489 Human/Server FR 17-253 3dl1 A 17-253 T0490 Server CM_medium 3-368 3dme A 3-368 T0490_1 Server CM_medium 3-49,148-228,318-368 3dme A 3-49,148-228,318-368 T0490_2 Server CM_easy 50-88,143-147 3dme A 50-88,143-147 T0490_3 Server CM_easy 89-142 3dme A 89-142 T0490_4 Server CM_medium 229-317 3dme A 229-317 T0491 Server CM_easy 1-98 3dm4 A 1-98 T0492 Human/Server CM_medium 1-73 2k5l A 1-73 T0493 Human/Server CM_medium 3-172 3dmn A 596-765 T0494 Server CM_medium 32-378 2vx3 A 135-481 T0494_1 Server CM_easy 32-137 2vx3 A 135-240 T0494_2 Server CM_medium 138-378 2vx3 A 241-481 T0495 Human/Server FR 5-150 3dnx A 5-150 T0496 Human/Server FM 4-178 3do9 A 4-178 T0496_1 Human/Server FM 4-126 3do9 A 4-126 T0496_2 Human/Server CM_medium 127-178 3do9 A 127-178 T0497 Server CM_medium 1-145 3dmb A 1-145 T0497_1 Server CM_medium 1-133 3dmb A 1-133 T0497_1s Server CM_medium 1-145 3dmb A,C A:1-133,C:134-145 T0498 Human/Server CM_hard 7-54 2jws A 7-54 T0499 Human/Server CM_easy 1-56 2jwu A 1-56 T0501 Server FR 2-343 3dma A 2-343 T0501_1 Server CM_hard 2-214 3dma A 2-214 T0501_2 Server CM_hard 215-343 3dma A 215-343 T0502 Server CM_medium 4-101 3dm3 A 4-101 T0503 Server CM_medium 1-146 3dn7 A 1-146 T0504 Server FM 1-208 3dlm A 1-208 T0504_1 Server CM_medium 1-61 3dlm A 1-61 T0504_2 Server FR 62-152 3dlm A 62-152 T0504_3 Server CM_easy 153-208 3dlm A 153-208 T0505 Server CM_medium 6-280 3dnp A 3-277 T0505_1 Server CM_easy 6-85,200-280 3dnp A 3-82,197-277 T0505_2 Server CM_hard 86-199 3dnp A 83-196 T0506 Server CM_hard 4-254 3dnh A 4-254 T0506_1 Server CM_medium 4-173 3dnh A 4-173 T0506_2 Server CM_medium 174-254 3dnh A 174-254 T0507 Server CM_hard 1-142 3do8 A 1-142 T0508 Server CM_easy 17-197 3dou A 17-197 T0509 Server CM_medium 3-213 3dr5 A 3-213 T0510 Server FR 1-279 3doa A 1-279 T0510_1 Server FR 1-165 3doa A 1-165 T0510_2 Server CM_hard 166-235 3doa A 166-235 T0510_3 Server FR 236-279 3doa A 236-279 T0511 Server CM_medium 1-271 3e03 A 3-273 T0512 Server CM_hard 1-327 3dsm A 15-341 T0513 Server FR 1-283 3dup A 1-283 T0513_1 Server CM_hard 1-15,115-283 3dup A 1-15,115-283 T0513_2 Server FR 16-114 3dup A 16-114 T0514 Server FR 2-145 3dtd A 42-185