Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1f3t-B 27.8 2.7 317 381 18 PDB MOLECULE: ORNITHINE DECARBOXYLASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1B Sbjct=1f3tB Z-score=27.8
back to top
DSSP ---------------LLLLLEEEEEHHHHHHHHHHHHHHHHhhLLEELEELLLLLLHHHH Query ---------------XIETPYYLIDKAKLTRNXERIAHVREksGAKALLALKCFATWSVF 45 ident | | | | | || | | Sbjct rflegfntrdalckkISGDPFFVADLGDIVRKHETWKKCLP--RVTPFYAVKCNDDWRVL 58 DSSP lllllllhhhhhhhhLLLLLEEEEEHHHHHHHHHHHHHHLL--LEEEEEEHHHLLLHHHH DSSP HHHHLLLLEEEELLHHHHHHHHHHLLL--EEEEELLLLLHHHHHHHH-HHLLEEEELLHH Query DLXRDYXDGTTSSSLFEVRLGRERFGK--ETHAYSVAYGDNEIDEVV-SHADKIIFNSIS 102 ident | | | | | | | | Sbjct GTLAALGTGFDCASNTEIQRVRGIGVPpeKIIYANPCKQISHIRYARdSGVDVMTFDCVD 118 DSSP HHHHHLLLEEEELLHHHHHHHHHLLLLhhHEEELLLLLLHHHHHHHHhHLLLEEEELLHH DSSP HHHHHLLLLLLLEEEEELLLL---LLLLL--LHHHHHLLLL----LLLEEELLLLLLLll Query QLERFADKAAGIARGLRLNPQ---RLGEW--DVPKVERVXD----RINGFXIHNNCENkd 153 ident || | || | | | | Sbjct ELEKVAKTHPKAKMVLRISTDlsvKFGAKveDCRFILEQAKklniDVTGVSFHVGSGS-- 176 DSSP HHHHHHHHLLLLEEEEELLLLlllLLLLLhhHHHHHHHHHHhlllLEEEEELLLLLLL-- DSSP hHHHHhHHHHHHHHHHHHHHH-------LLEEELLLLLLlLLLL--LLHHHHHHHHHHHH Query fGLFDrXLGEIEERFGALIAR-------VDWVSLGGGIHfTGDD--YPVDAFSARLRAFS 204 ident ||| | Sbjct -TDAS-TFAQAISDSRFVFDMgtelgfnMHILDIGGGFP-GTRDapLKFEEIAGVINNAL 233 DSSP -LLLH-HHHHHHHHHHHHHHHhhhllllLLEEELLLLLL-LLLLllLLHHHHHHHHHHHH DSSP HHHL-----LEEEELLLHHHHLLLEEEEEEEEEEEEL-LEEEEELLLHHHHLHHHHHHLL Query DRYG-----VQIYLEPGEASITKSTTLEVTVLDTLYN-KNLAIVDSSIEAHXLDLLIYRE 258 ident | ||| || | | | | Sbjct EKHFppdlkLTIVAEPGRYYVASAFTLAVNVIAKKVTqSFMYYVNDGVYGSFNCILYDHA 293 DSSP HHHLlllllLEEEELLLHHHHHHHEEEEEEEEEEEELlLEEEEELLLLLLLLHHHHHLLL DSSP LLLLL------lllLLEEEEEELLLLLLLLEEEE-EEELlLLLLLLEEEELLLLLLLHHH Query TAKVL------pneGSHSYXICGKSCLAGDVFGE-FRFAeELKVGDRISFQDAAGYTXVK 311 ident | | | | | | || | | || | Sbjct VVRPLpqrepipneKLYPSSVWGPTCDGLDQIVErYYLP-EMQVGEWLLFEDMGAYTVVG 352 DSSP LLLLEellllllllLEEEEEEELLLLLLLLEEEEeEEEE-LLLLLLEEEELLLLLLLHHH DSSP LLLHHHLLLLEEEEELLllleeeeelllhhhhhhlll Query KNWFNGVKXPAIAIRELdgsvrtvreftyadyeqsls 348 ident ||| | | Sbjct TSSFNGFQSPTIYYVVS--------glpdhvvrelks 381 DSSP LLLHHHLLLLEEEEELL--------lllhhhhhhhhl