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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2qcx-B 26.2 2.3 220 227 22 PDB MOLECULE: TRANSCRIPTIONAL ACTIVATOR TENA;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2qcxB Z-score=26.2
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DSSP lllllllLLLHHHHHHHHHHHHHHHHHHLHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHH Query henlyfqGXTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFT 60 ident | || | | | | | | | | | || | Sbjct -------GMKFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFA 53 DSSP -------LLLHHHHHHHHLHHHHHHHHLLHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHH DSSP HHHHHHHHHLLLHHHHHHHHHHHHHHHL-LLLHhHHHHHHHLllLHHH-hLLLLLLLHHH Query NIYAXLIPKXSSXEDVKFLVEQIEFXLE-GEVEaHEVLADFInePYEE-iVKEKVWPPSG 118 ident | | | | | | Sbjct KVQSFGAAYAKDLYTTGRMASHAQGTYEaEMAL-HREFAELL--EISEeeRKAFKPSPTA 110 DSSP HHHHHHHHHLLLHHHHHHHHHHHHHHHHhHHHL-LLLLLLLL--LLLLhhHHLLLLLHHH DSSP HHHHHHHHHHHhHLLLLHHHHHHHLHHHHHHHHHHHHHHHlllLLLLLL-LHHHHHHHHH Query DHYIKHXYFNAfARENAAFTIAAXAPCPYVYAVIGKRAXEdpkLNKESV-TSKWFQFYST 177 ident | | | | || || | | || | Sbjct YSFTSHMYRSV-LSGNFAEILAALLPCYWLYYEVGEKLLH---CDPGHPiYQKWIGTYGG 166 DSSP HHHHHHHHHHH-LLLLHHHHHHHHHHHHHHHHHHHHHHHH---LLLLLHhHHHHHHHHLL DSSP -HLHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL--LLLL Query -EXDELVDVFDQLXDRLTKHCSETEKKEIKENFLQSTIHERHFFNXAYINEKWE--YGGN 234 ident | | | | |||| | | | || | | Sbjct dWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSdsAIKE 226 DSSP hHHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLhhHHHH DSSP L Query N 235 ident Sbjct V 227 DSSP L