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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3h3l-A 30.1 1.8 213 232 52 PDB MOLECULE: PUTATIVE SUGAR HYDROLASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3h3lA Z-score=30.1
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DSSP lleeeeeellllllllleeeeeellLLLEEELLLLLLLLLEEELLLLLLLLLEEEELLEE Query pskvalsyskslkapetdslnlpvdENGYITIFDGETFNGWRGYGKDRVPTKWTIEDGCI 60 ident || ||| | |||||| || | ||| | Sbjct ---------------qaldsdgiptGGEWITXFDGKTLNGWRGYCRQDVPLGWVVEDGSI 45 DSSP ---------------llllllllllLLLLEELLLLLLLLLEEELLLLLLLLLEEEELLEE DSSP EELLLllhhhlLLLLLLEEEEEEELLEEEEEEEEELLLLEEEEEEEELLLEeelllllee Query KFNGSgggeaqDGDGGDLIFAHKFKNFELELEWKVAKGSNSGILYLAQEVTskdkdgndv 120 ident || | |||| ||||| | ||| | |||| | ||| Sbjct TYKGS--dnkaDTGFGDLIYDKKFKNFVFEIEWKIDKAGNSGIFYTAQEIE--------- 94 DSSP EELLL--llllLLLLLLEEELLLLLLEEEEEEEEELLLLEEEEEEEELLLL--------- DSSP ELLHHHLLLEEEEELLLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEE Query LEPIYISAPEYQILDNANHPDAKLGKDNNRQSASLYDXIPAVPQNSKPFGEWNKAKIXVY 180 ident ||| | |||| ||| | ||| | | ||| |||| || || | ||| | || Sbjct GTPIYYSSPEYQLLDNENXPDAWEGCDGNRQAGAVYDXIXPDPQPVKPYGNWNKTRIVVY 154 DSSP LLLHHHLLLEEEEELLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEE DSSP LLEEEEEELLEEEEEEELLLHHHHHHHHLLLLLLLL-----LHHHHHHHHLLLLllLLEE Query KGTVVHGQNDENVLEYHLWTKQWTDXLQASKFSEDK-----WPLAFELLNNCGGenHEGF 235 ident | | || || | | |||| | | | || | Sbjct NQRVIHYXNDVKILEFQFGTPVWRALVDHSKFSKFStspekCPEAYDLXLQCGK--QPGY 212 DSSP LLEEEEEELLEEEEEEELLLHHHHHHHHLLLLLLLLlllllLHHHHHHHHLLLL--LLLE DSSP EEELLLLLLEEEEEEEEEELl Query IGLQDHGDDVWFRNIRVKVLd 256 ident || |||| | ||||| | | Sbjct IGXQDHGYGVCFRNIRIKEL- 232 DSSP EEELLLLLLEEEEEEEEEEL-