Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1ybt-B 22.4  2.3  161   172   30 PDB  MOLECULE: HYDROLASE, ALPHA/BETA HYDROLASE FOLD FAMILY;               


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=1ybtB Z-score=22.4

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DSSP  lLEEEEEEEEEEEELLLLH-hHLLLLHHHHHHHHHHHHhLHHHHHHHLLLEEEEEELLEE
Query nAERRLCAILAADXAGYSR-lXERNETDVLNRQKLYRReLIDPAIAQAGGQIVKTTGDGX   59
ident  ||| |  |   |  |                            |   ||  | | ||| 
Sbjct -AERXLATIXFTDIVGSTQhaAALGDDRWRDLLDNHDT-IVCHEIQRFGGREVNTAGDGF   58
DSSP  -LEEEEEEEEEEEELLHHHhhHHHLHHHHHHHHHHHHH-HHHHHHHHLLLEELLLLLLLE


DSSP  EEEELLHHHHHHHHHHHHHHHHHHLllllhhhlLLEEEEEEEEEEEELL----LLEELHH
Query LARFDTAQAALRCALEIQQAXQQREedtprkerIQYRIGINIGDIVLED----GDIFGDA  115
ident  | |    ||  ||  |  |             |  ||||  |     |     |  | |
Sbjct VATFTSPSAAIACADDIVDAVAALG--------IEVRIGIHAGEVEVRDashgTDVAGVA  110
DSSP  EEEELLHHHHHHHHHHHHHHHHLLL--------LLEEEEEEEEEEEEEEelleEEEELHH


DSSP  HHHHHHHHHHLLLLLEEEEHHHHHHHLLLlLLLLEEEEEEEELLEEEEEEEEEELLLL--
Query VNVAARLEAISEPGAICVSDIVHQITQDRvSEPFTDLGLQKVKNITRPIRVWQWVPDA--  173
ident |   ||  |   |    ||  |  |        |   | |  |      |      |   
Sbjct VHIGARVCALAGPSEVLVSSTVRDIVAGS-RHRFAERGEQELKGVPGRWRLCVLXRDDat  169
DSSP  HHHHHHHHHHLLLLLEEEEHHHHHHLLLL-LLLEEELLLLLLLLLLLLLLEEEELLLLll


DSSP  ---
Query ---  173
ident    
Sbjct rtr  172
DSSP  lll