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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1ybt-B 22.4 2.3 161 172 30 PDB MOLECULE: HYDROLASE, ALPHA/BETA HYDROLASE FOLD FAMILY;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1ybtB Z-score=22.4
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DSSP lLEEEEEEEEEEEELLLLH-hHLLLLHHHHHHHHHHHHhLHHHHHHHLLLEEEEEELLEE Query nAERRLCAILAADXAGYSR-lXERNETDVLNRQKLYRReLIDPAIAQAGGQIVKTTGDGX 59 ident ||| | | | | | || | | ||| Sbjct -AERXLATIXFTDIVGSTQhaAALGDDRWRDLLDNHDT-IVCHEIQRFGGREVNTAGDGF 58 DSSP -LEEEEEEEEEEEELLHHHhhHHHLHHHHHHHHHHHHH-HHHHHHHHLLLEELLLLLLLE DSSP EEEELLHHHHHHHHHHHHHHHHHHLllllhhhlLLEEEEEEEEEEEELL----LLEELHH Query LARFDTAQAALRCALEIQQAXQQREedtprkerIQYRIGINIGDIVLED----GDIFGDA 115 ident | | || || | | | |||| | | | | | Sbjct VATFTSPSAAIACADDIVDAVAALG--------IEVRIGIHAGEVEVRDashgTDVAGVA 110 DSSP EEEELLHHHHHHHHHHHHHHHHLLL--------LLEEEEEEEEEEEEEEelleEEEELHH DSSP HHHHHHHHHHLLLLLEEEEHHHHHHHLLLlLLLLEEEEEEEELLEEEEEEEEEELLLL-- Query VNVAARLEAISEPGAICVSDIVHQITQDRvSEPFTDLGLQKVKNITRPIRVWQWVPDA-- 173 ident | || | | || | | | | | | | | Sbjct VHIGARVCALAGPSEVLVSSTVRDIVAGS-RHRFAERGEQELKGVPGRWRLCVLXRDDat 169 DSSP HHHHHHHHHHLLLLLEEEEHHHHHHLLLL-LLLEEELLLLLLLLLLLLLLEEEELLLLll DSSP --- Query --- 173 ident Sbjct rtr 172 DSSP lll