Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  3k25-A 32.6  2.2  275   289   18 PDB  MOLECULE: SLR1438 PROTEIN;                                           


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=3k25A Z-score=32.6

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DSSP  leeeeeeeeLLEEEEEEEE--LLEEEEEELLLLLEEEEEEELllLEELLLLLLL-HHHHH
Query anfiekityLGTPAIKAGN--EHLEXIVVPEWGSNVISLVDKttNVQLLREPET-AESFH   57
ident                             ||  |  |            |           
Sbjct -xynisftpDRPLTYHLEDdqSLARLSLVPGRGGLVTEWTVQ--GQPILYFDRErFQDPS   57
DSSP  -leeeeeelLLLLEEEEEEllLLEEEEEEHHHLLEEEEEEEL--LEELLLLLLLhHHLLL


DSSP  HLLlLLLLLEEL-LLLEEELLEEEELLEEEELlllllllleEELLLLLLLLLEEEEEEEL
Query DTPtLYGIPILF-PPNRISDGTFSFRGRTYHFdinekdkhnHLHGFLYHEKWNVVTTKQT  116
ident       ||||||          |   |  |             |||     | |      
Sbjct LSV-RGGIPILFpICGNLPQDQFNHAGKSYRL---------KQHGFARDLPWEVIGQQTQ  107
DSSP  LLL-LLLLLEELlLLLLLHHHEEEELLEEEEL---------LLLLLHHHLLLEEEEEELL


DSSP  lLLEEEEEEEEHhhLHHHHHHLLLLEEEEEEEEEELLEEEEEEEEEELLLLLEEELLEEL
Query dEGVIVETEIDLseLPHVQKQFPHHAVVRXTYTIKENTLFKHATVXNKGKEAFPWGIGYH  176
ident                      ||        |      |       | |    |   | |
Sbjct -DNARLDLRLSH--NDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQRXPFSLGFH  164
DSSP  -LLEEEEEEEEL--LHHHHLLLLLLEEEEEEEEEELLEEEEEEEEEELLLLLEEELLEEL


DSSP  LLEELL-LLLEEEEELEEEEEEELLllleeeEEEELllHHHHhhlLLLLLLLLEEEEEEL
Query TTFIFP-AESSLFSLTADQQWELDErllptgKLXDVpyKEALhegXDLRHKQLDDVFLSS  235
ident   |             |                              |    ||  |   
Sbjct PYFFCReKLGITLAIPANDYLDQKT------GDCHG--YDGQ---LNLTSPELDLAFTQI  213
DSSP  LEEELLlLLLLEEELLLLEEEELLL------LLEEE--LLLL---LLLLLLEEEEEELLL


DSSP  HhhhllLLEEEEEELLLLEEEEEEELLLLLEEEEELLlLLLLEEEEEEELLLLLHHHLll
Query YqkrggENQAVIYHQHAHISIIYKADEQFKHWVVYNAdGKQGYLCPEPYTWVTNAVNLdl  295
ident          |          |     |     |         ||| ||     || |   
Sbjct S-----QPRAHFIDPDRNLKIEVSFSELYQTLVLWTV-AGKDYLCLEPWSGPRNALNS--  265
DSSP  L-----LLEEEEEELLLLEEEEEEELLLLLEEEEEEE-LLLLEEEEEEELLLLLHHHH--


DSSP  lhhhHLLEEELLLLEEEEEEEEEEEEL
Query psslTGLQVLEPGEETTAKSSITIELN  322
ident       |   ||     |         
Sbjct ---gEQLAWVEPYSSRSAWVNFQVSTE  289
DSSP  ---lLLLEEELLLEEEEEEEEEEEELL