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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3k25-A 32.6 2.2 275 289 18 PDB MOLECULE: SLR1438 PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3k25A Z-score=32.6
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DSSP leeeeeeeeLLEEEEEEEE--LLEEEEEELLLLLEEEEEEELllLEELLLLLLL-HHHHH Query anfiekityLGTPAIKAGN--EHLEXIVVPEWGSNVISLVDKttNVQLLREPET-AESFH 57 ident || | | | Sbjct -xynisftpDRPLTYHLEDdqSLARLSLVPGRGGLVTEWTVQ--GQPILYFDRErFQDPS 57 DSSP -leeeeeelLLLLEEEEEEllLLEEEEEEHHHLLEEEEEEEL--LEELLLLLLLhHHLLL DSSP HLLlLLLLLEEL-LLLEEELLEEEELLEEEELlllllllleEELLLLLLLLLEEEEEEEL Query DTPtLYGIPILF-PPNRISDGTFSFRGRTYHFdinekdkhnHLHGFLYHEKWNVVTTKQT 116 ident |||||| | | | ||| | | Sbjct LSV-RGGIPILFpICGNLPQDQFNHAGKSYRL---------KQHGFARDLPWEVIGQQTQ 107 DSSP LLL-LLLLLEELlLLLLLHHHEEEELLEEEEL---------LLLLLHHHLLLEEEEEELL DSSP lLLEEEEEEEEHhhLHHHHHHLLLLEEEEEEEEEELLEEEEEEEEEELLLLLEEELLEEL Query dEGVIVETEIDLseLPHVQKQFPHHAVVRXTYTIKENTLFKHATVXNKGKEAFPWGIGYH 176 ident || | | | | | | | Sbjct -DNARLDLRLSH--NDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQRXPFSLGFH 164 DSSP -LLEEEEEEEEL--LHHHHLLLLLLEEEEEEEEEELLEEEEEEEEEELLLLLEEELLEEL DSSP LLEELL-LLLEEEEELEEEEEEELLllleeeEEEELllHHHHhhlLLLLLLLLEEEEEEL Query TTFIFP-AESSLFSLTADQQWELDErllptgKLXDVpyKEALhegXDLRHKQLDDVFLSS 235 ident | | | || | Sbjct PYFFCReKLGITLAIPANDYLDQKT------GDCHG--YDGQ---LNLTSPELDLAFTQI 213 DSSP LEEELLlLLLLEEELLLLEEEELLL------LLEEE--LLLL---LLLLLLEEEEEELLL DSSP HhhhllLLEEEEEELLLLEEEEEEELLLLLEEEEELLlLLLLEEEEEEELLLLLHHHLll Query YqkrggENQAVIYHQHAHISIIYKADEQFKHWVVYNAdGKQGYLCPEPYTWVTNAVNLdl 295 ident | | | | ||| || || | Sbjct S-----QPRAHFIDPDRNLKIEVSFSELYQTLVLWTV-AGKDYLCLEPWSGPRNALNS-- 265 DSSP L-----LLEEEEEELLLLEEEEEEELLLLLEEEEEEE-LLLLEEEEEEELLLLLHHHH-- DSSP lhhhHLLEEELLLLEEEEEEEEEEEEL Query psslTGLQVLEPGEETTAKSSITIELN 322 ident | || | Sbjct ---gEQLAWVEPYSSRSAWVNFQVSTE 289 DSSP ---lLLLEEELLLEEEEEEEEEEEELL