Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2a8e-A 21.2 2.4 191 210 24 PDB MOLECULE: HYPOTHETICAL PROTEIN YKTB;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2a8eA Z-score=21.2
back to top
DSSP lllhhHLLLHH-HHHHHHLLLHHHHHHHHHHLHHHHHHHHHHHHHHHHHlLLLLLLLEEE Query ierlqDYLLPE-WVSIFDIADFSGRXLRIRGDIRPALLRLASRLAELLNeSPGPRPWYPH 59 ident | | | || || | | | | || Sbjct ----tQXRFTEeDFNTFTIEGLDARXEVLKETVRPKLTALGEHFAPTLS-ALTGDEXFPH 55 DSSP ----lLLLLLHhHHHHHHLLLHHHHHHHHLLLHHHHHHHHHHHHHHHHH-HHHLLLLEEE DSSP ELLL-LLLLlLLLLEEEEEEELLLLLLLLLLEEEEEEELLEEEEEEEELLLLHHhHHHHH Query VASH-XRRRvNPPPETWLALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEeRKNLG 118 ident || | | ||| | | ||||| | | | | | Sbjct VAKHaRRSV-NPPADSWVAFANSKRGYKKLPHFQIGLWESHVFVWFAIIYESPI-KEEYG 113 DSSP ELLLlLLLL-LLLLLEEEEEELLLLLLLLLLEEEEEELLLEEEEEEEELLLLLL-HHHHH DSSP HHHHHLHHHHHHHHhhHLLLEEL-HHHLllllLLLLLLL----LLHHHHHHHHHHLLLLL Query RWXSRSGPAFEQWKkkVGDLRDF-GPVHddpxADPPKVE----WDPRVFGERLGSLKSAS 173 ident | ||| | | Sbjct KLLEVNQETITKNI--PDSFVWSaDHTK----PGVHKQSexdkEQLKTLFERLQTVKKAE 167 DSSP HHHHHLHHHHHHHL--LLLLEEElLLLL----LLLEEHHhllhHHHHHHHHHHHHLLLLL DSSP EEEEEEELL--------LLLHHHHHHHHHHLHHHHHHLLL--- Query LDIGFRVTF--------DTSLAGIVKTIRTFDLLYAEAEK--- 205 ident | | | | || | Sbjct LLCGIQLQKeevlnxnnQEFLQRIDDAFKQLAFLYRLTQKvtq 210 DSSP EEEEEEEEHhhhhhllhHHHHHHHHHHHHHHHHHHHHHHHhll