Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3eeh-A 11.6 2.3 100 116 25 PDB MOLECULE: PUTATIVE LIGHT AND REDOX SENSING HISTIDINE
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3eehA Z-score=11.6
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DSSP -llhhhhhhHLLLEEEEELLLLLLE-EELHHHHHHLLLLHhhLLLEEL-----LLLLLLL Query -erfqlavsGASAGLWDWNPKTGAX-YLSPHFKKIXGYEDheLPDEIT-----ESIHPDD 53 ident || | | ||| | Sbjct errvrelteATNDILWEFTADLSEVlVINSAYEDIWGRSV--AKLRENphdflNGIHPED 58 DSSP lhhhhhhhlLLLLEEEEEELLLLLEeEELLHHHHHHLLLH--HHHHHLhhhhhHHLLHHH DSSP HHHHHHHHHHHHHhLLLEEEEEEEELlLLLE-EEEEEEEEEEELLLLLEEEEEEEEEELH Query RARVLAALKAHLEhRDTYDVEYRVRTrSGDF-RWIQSRGQALWNSAGEPYRXVGWIXDVT 112 ident | ||| || || | | ||| | | | | Sbjct RELMKDTMQSLMD-GESADVECRVNA-TEEYqRWVWIQGEPITNDAGETVRVAGFARDIT 116 DSSP HHHHHHHHHHHHL-LLLEEEEEEELH-HHLLlEEEEEEEEEEELLLLLEEEEEEEEEELL DSSP hhhhhhhhhhhhhhhhhll Query drkrdedalrvsreelrrl 131 ident Sbjct ------------------- 116 DSSP -------------------