Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3i45-A 39.3 3.5 358 378 22 PDB MOLECULE: TWIN-ARGININE TRANSLOCATION PATHWAY SIGNAL
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3i45A Z-score=39.3
back to top
DSSP ---LEEEEEEELLLlLLHHHHHHHHHHHHHHHHHHLLLLlEELL-EEEEEEEEELLLLHH Query ---DLKIALIYGKTgPLEAYAKQTETGLXXGLEYATKGTxTLDG-RKIVVITKDDQSKPD 56 ident | | | | | | | | || || | Sbjct sleAIRIGEINSYS-QIPAFTLPYRNGWQLAVEQINAAG-GLLGgRPLEVISRDDGGDPG 58 DSSP lllLEEEEEEELLL-LLHHHHHHHHHHHHHHHHHHHHLL-LLLLlLLEEEEEEELLLLHH DSSP HHHHHHHHHHHLLLLLEEEELLLHHHHHHHHHHHHHHLLLEEELLLLLHHHHLLLLLLLE Query LSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYI 116 ident | | | || | || | | | | || ||| Sbjct KAVTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYT 118 DSSP HHHHHHHHHHHHHLLLEEEELLLHHHHHHHHHHHHHHLLLEEELLLLLHHHLLLLLLLLE DSSP EELLLLHHHHHHHHHHHHLL-LLEEEEEEEELLHHHHHHHHHHHHHHLLLL--LEEEEEE Query FRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDGVAAFKEALAKTG--ATLATEE 173 ident | | | | || | | | || ||| | | | Sbjct YRLRPSTYMQAAMLAAEAAKlPITRWATIAPNYEYGQSAVARFKELLLAARpeVTFVAEQ 178 DSSP EELLLLHHHHHHHHHHHHLLlLLLEEEEELLLLHHHHHHHHHHHHHHHHHLllLEEEEEE DSSP EELLLLLLLHHHHHHHHHHHllllleEEEEELLLLLL--LHHHHHHHLLHHHhLEEEEEL Query YVPTTTTDFTAVGQRLFDALkdkpgkKIIWVIWAGGG--DPLTKLQDXDPKRyGIELSTG 231 ident | | | | | | Sbjct WPALYKLDAGPTVQALQQAE-----pEGLFNVLFGADlpKFVREGRVRGLFA-GRQVVSM 232 DSSP LLLLLLLLHHHHHHHHHHLL-----lLEEEELLLLLHhhHHHHHHHHHLLLL-LLEEEEE DSSP -LLLLLHHH-HHHH-LLLLEEEElLLLLLLLLHHHHHHHHHHHHHHLLLLLHHHHHHHHH Query -GNILPALA-AYKR-LPGXEGATyYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSA 288 ident | | | | | | | Sbjct lTGEPEYLNpLKDEaPEGWIVTG-YPWYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNT 291 DSSP eEELHHHHHhHHHHlLLLLEEEE-LLHHHLLLHHHHHHHHHHHHHHLLLLLHHHHHHHHH DSSP HHHHHHHHHHHLLLLHHHHHHHHLLLEEEELLEEEEELLLLLLEELLEEEEEEELLLLll Query AXAVVTAVQKAKSTDTEKLIAAXEGXEFDTPKGKXVFRKEDHQALQSXYHFKVKVDPAva 348 ident | | || | | | | || | || ||| Sbjct LTAMAVAFEKAGGTESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDG-- 349 DSSP HHHHHHHHHHHLLLLHHHHHHHLLLLEEEELLEEEELLLLLLLLLLLEEEEEEEEELL-- DSSP LLEEEEEEEELHHhLLLLL------LLLL- Query WAVLEPVRELKIEeXNIPI------KNKK- 371 ident | | | Sbjct KGVMVDWRYVDGG-SVLPPpevvsaWRPAg 378 DSSP EEEEEEEEEELHH-HHLLLhhhhhlLLLLl