Results

Parseable data
Matches to PDB90
Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  3i45-A 39.3  3.5  358   378   22 PDB  MOLECULE: TWIN-ARGININE TRANSLOCATION PATHWAY SIGNAL                 


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=3i45A Z-score=39.3

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DSSP  ---LEEEEEEELLLlLLHHHHHHHHHHHHHHHHHHLLLLlEELL-EEEEEEEEELLLLHH
Query ---DLKIALIYGKTgPLEAYAKQTETGLXXGLEYATKGTxTLDG-RKIVVITKDDQSKPD   56
ident       |  |        |       |     |        | | |   ||  ||   | 
Sbjct sleAIRIGEINSYS-QIPAFTLPYRNGWQLAVEQINAAG-GLLGgRPLEVISRDDGGDPG   58
DSSP  lllLEEEEEEELLL-LLHHHHHHHHHHHHHHHHHHHHLL-LLLLlLLEEEEEEELLLLHH


DSSP  HHHHHHHHHHHLLLLLEEEELLLHHHHHHHHHHHHHHLLLEEELLLLLHHHHLLLLLLLE
Query LSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYI  116
ident     |  |     |     ||  |   ||    |   |          |  | || ||| 
Sbjct KAVTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYT  118
DSSP  HHHHHHHHHHHHHLLLEEEELLLHHHHHHHHHHHHHHLLLEEELLLLLHHHLLLLLLLLE


DSSP  EELLLLHHHHHHHHHHHHLL-LLEEEEEEEELLHHHHHHHHHHHHHHLLLL--LEEEEEE
Query FRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDGVAAFKEALAKTG--ATLATEE  173
ident  |        |   |    |      || |  |  |   || ||| |       |   | 
Sbjct YRLRPSTYMQAAMLAAEAAKlPITRWATIAPNYEYGQSAVARFKELLLAARpeVTFVAEQ  178
DSSP  EELLLLHHHHHHHHHHHHLLlLLLEEEEELLLLHHHHHHHHHHHHHHHHHLllLEEEEEE


DSSP  EELLLLLLLHHHHHHHHHHHllllleEEEEELLLLLL--LHHHHHHHLLHHHhLEEEEEL
Query YVPTTTTDFTAVGQRLFDALkdkpgkKIIWVIWAGGG--DPLTKLQDXDPKRyGIELSTG  231
ident        |     | |  |               |                  |      
Sbjct WPALYKLDAGPTVQALQQAE-----pEGLFNVLFGADlpKFVREGRVRGLFA-GRQVVSM  232
DSSP  LLLLLLLLHHHHHHHHHHLL-----lLEEEELLLLLHhhHHHHHHHHHLLLL-LLEEEEE


DSSP  -LLLLLHHH-HHHH-LLLLEEEElLLLLLLLLHHHHHHHHHHHHHHLLLLLHHHHHHHHH
Query -GNILPALA-AYKR-LPGXEGATyYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSA  288
ident        |         |      |             |     |    |      |   
Sbjct lTGEPEYLNpLKDEaPEGWIVTG-YPWYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNT  291
DSSP  eEELHHHHHhHHHHlLLLLEEEE-LLHHHLLLHHHHHHHHHHHHHHLLLLLHHHHHHHHH


DSSP  HHHHHHHHHHHLLLLHHHHHHHHLLLEEEELLEEEEELLLLLLEELLEEEEEEELLLLll
Query AXAVVTAVQKAKSTDTEKLIAAXEGXEFDTPKGKXVFRKEDHQALQSXYHFKVKVDPAva  348
ident   |   |  ||  |  | |        | || |   ||  |||                 
Sbjct LTAMAVAFEKAGGTESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDG--  349
DSSP  HHHHHHHHHHHLLLLHHHHHHHLLLLEEEELLEEEELLLLLLLLLLLEEEEEEEEELL--


DSSP  LLEEEEEEEELHHhLLLLL------LLLL-
Query WAVLEPVRELKIEeXNIPI------KNKK-  371
ident   |    |         |            
Sbjct KGVMVDWRYVDGG-SVLPPpevvsaWRPAg  378
DSSP  EEEEEEEEEELHH-HHLLLhhhhhlLLLLl