Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2zkq-l 2.2 2.6 48 115 6 PDB MOLECULE: 18S RIBOSOMAL RNA;
2: 3esw-A 2.2 4.4 49 333 18 PDB MOLECULE: PEPTIDE-N(4)-(N-ACETYL-BETA-GLUCOSAMINYL)
3: 1iz6-A 2.1 3.8 40 136 5 PDB MOLECULE: INITIATION FACTOR 5A;
4: 1bkb-A 2.1 7.2 45 136 9 PDB MOLECULE: TRANSLATION INITIATION FACTOR 5A;
5: 1yby-B 2.0 4.4 39 178 13 PDB MOLECULE: TRANSLATION ELONGATION FACTOR P;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2zkql Z-score=2.2
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DSSP ------LLLLLLLLL---llLLLEEEEEEeEELLHHhhhhlhhhlllLEEEEEEELLLLE Query ------GSGMKEFPC---wlVEEFVVAEEcSPCSNFrakttpecgptGYVEKITCSSSKR 51 ident | | Sbjct qykkahLGTALKANPfggasHAKGIVLEK-VGVEAK-----qpnsaiRKCVRVQLIKNGK 54 DSSP llllllLLLLLLLLLlllllLEEEEEEEE-EEEELL-----llllleEEEEEEEELHHHL DSSP EEEEELL--hHHHL---------------------------------------------l Query NEFKSCR--sALME---------------------------------------------q 64 ident | Sbjct KITAFVPndgCLNFieendevlvagfgrkghavgdipgvrfkvvkvanvsllalykgkke 114 DSSP EEEEELLlllLLLLlllllleeellllllllllllllllleellllllllllllllllll DSSP l Query r 65 ident Sbjct r 115 DSSP l
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct ssglvprgshmnnidfdsiakmllikykdfilskfkkaapvenirfqnlvhtnqfaqgvl 60 DSSP lllllllllllllllhhhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhlhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct gqsqhlctvydnpswhsivletldldliyknvdkefakdghaegeniytdylvkellryf 120 DSSP hhhhhhllllllhhhhhhhhhhllhhhhhhhhhhhhhlllllllllhhhhhhhhhhhhhh DSSP -LLLLLLL--LLLL------LLLEEEEEEEEELLhHHHHHlhhhllLLEEEEEEELLLLE Query -GSGMKEF--PCWL------VEEFVVAEECSPCSnFRAKTtpecgpTGYVEKITCSSSKR 51 ident | | | | | | || | Sbjct kQDFFKWCnkPDCNhcgqntSENMTPLGSQGPNG-EESKF-----nCGTVEIYKCNRCGN 174 DSSP hHLLLEELllLLLLllllllLLLEEEEEEELLLH-HHHLL-----lEEEEEEEEELLLLL DSSP EEEEE------------------------------------------------------- Query NEFKS------------------------------------------------------- 56 ident Sbjct ITRFPryndpiklletrkgrxgewcnlftlilksfgldvryvwnredhvwceyfsnflnr 234 DSSP EEEEEeellhhhhhhhleelhhhhhhhhhhhhhhlllleeeeeellleeeeeeeehhhle DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 56 ident Sbjct wvhvdsceqsfdqpyiysinwnkkmsyciafgkdgvvdvskryilqnelprdqikeedlk 294 DSSP eeeellllllllllhhhhllllllllleeeeelleeeelhhhhllllllllllllhhhhh DSSP ------------------------------llhhhhlll Query ------------------------------crsalmeqr 65 ident Sbjct flcqfitkrlryslnddeiyqlacrdeqeqielirgktq 333 DSSP hhhhhhhhhllllllhhhhhhhhhhhhhhhhhhhlllll
DSSP ---------lllllllllLLLLLEEEEEEeEELLHhhhhhlhhhlllLEEEEEEELLLLE Query ---------gsgmkefpcWLVEEFVVAEEcSPCSNfrakttpecgptGYVEKITCSSSKR 51 ident | | Sbjct gdktkvqvsklkpgryiiIDDEPCRIVNI-TVSSP------gkhgsaKARIEAVGIFDGK 53 DSSP lleeeeehhhllllleeeELLEEEEEEEE-EELLL------llllllEEEEEEEELLLLL DSSP EEEEELLHHHH------------------------------------------------- Query NEFKSCRSALM------------------------------------------------- 62 ident Sbjct VRSIVKPTSAEvdvpiidkktaqviaitpdtvqimdmetyetfevpidtgvadeirdqlk 113 DSSP EEEEEEELLLEeeeelleeeeeeeeeellleeeeelllllleeeeehhhhllhhhlllll DSSP --------------------lll Query --------------------eqr 65 ident Sbjct eginveywetlgrikimrikgeg 136 DSSP llleeeeeeelleeeeeeellll
DSSP LLLLLL------------lllLLLLLEEEEEEeEELLHhhhhhlhhhlllLEEEEEEELL Query GSGMKE------------fpcWLVEEFVVAEEcSPCSNfrakttpecgptGYVEKITCSS 48 ident | | | Sbjct KWVXSTkyveagelkegsyvvIDGEPCRVVEI-EKSKT------gkhgsaKARIVAVGVF 53 DSSP LLLLLLeeeehhhllllleeeELLEEEEEEEE-EEELL------llllllEEEEEEEELL DSSP LLEEEEEELLHHH----------------------------------------------- Query SKRNEFKSCRSAL----------------------------------------------- 61 ident | Sbjct DGGKRTLSLPVDAqvevpiiekftaqilsvsgdviqlxdxrdyktievpxkyveeeakgr 113 DSSP LLLEEEEEEELLLeeeellleeeeeeeeeellleeeeeellllleeeeehhhllhhhhll DSSP -------------------hlll Query -------------------meqr 65 ident Sbjct lapgaevevwqildrykiirvkg 136 DSSP llllleeeeeeelleeeeeeell
DSSP -----llllllllllLLLLEEEEEEeEELLHHhhhhlhhhlllLEEEEEEELLLLEEEEE Query -----gsgmkefpcwLVEEFVVAEEcSPCSNFrakttpecgptGYVEKITCSSSKRNEFK 55 ident | | | | | Sbjct xisagdfkngvtfelDGQIFQVIEF-QHVKPG-------kgaaFVRTKLKNIVTGATIEK 52 DSSP leehhhllllleeelLLLEEEEEEE-EEELLL-------llllEEEEEEEELLLLLEEEE DSSP ELLHHH------------------------------------------------------ Query SCRSAL------------------------------------------------------ 61 ident Sbjct TFNPTDkxpkahierkdxqylyndgdlyyfxdtetfeqlplgkdkigdalkfvkeneivk 112 DSSP EELLLLeellllleeeeeeeeeeelleeeeelllllleeeeehhhhllllllllllleee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 61 ident Sbjct vlshkgnvfgieppnfvelevtdtepgfatkpaivetgasikvplfvnkgdiiridtrtg 172 DSSP eeelllleeeeellleeeeeeeeellllleeeeeelllleeeeellllllleeeeellll DSSP --hlll Query --meqr 65 ident Sbjct eyxerv 178 DSSP eeeeel