Results

Parseable data
Matches to PDB90
Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2zkq-l  2.2  2.6   48   115    6 PDB  MOLECULE: 18S RIBOSOMAL RNA;                                         
   2:  3esw-A  2.2  4.4   49   333   18 PDB  MOLECULE: PEPTIDE-N(4)-(N-ACETYL-BETA-GLUCOSAMINYL)                  
   3:  1iz6-A  2.1  3.8   40   136    5 PDB  MOLECULE: INITIATION FACTOR 5A;                                      
   4:  1bkb-A  2.1  7.2   45   136    9 PDB  MOLECULE: TRANSLATION INITIATION FACTOR 5A;                          
   5:  1yby-B  2.0  4.4   39   178   13 PDB  MOLECULE: TRANSLATION ELONGATION FACTOR P;

Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2zkql Z-score=2.2

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DSSP  ------LLLLLLLLL---llLLLEEEEEEeEELLHHhhhhlhhhlllLEEEEEEELLLLE
Query ------GSGMKEFPC---wlVEEFVVAEEcSPCSNFrakttpecgptGYVEKITCSSSKR   51
ident                          | |                                
Sbjct qykkahLGTALKANPfggasHAKGIVLEK-VGVEAK-----qpnsaiRKCVRVQLIKNGK   54
DSSP  llllllLLLLLLLLLlllllLEEEEEEEE-EEEELL-----llllleEEEEEEEELHHHL


DSSP  EEEEELL--hHHHL---------------------------------------------l
Query NEFKSCR--sALME---------------------------------------------q   64
ident            |                                                
Sbjct KITAFVPndgCLNFieendevlvagfgrkghavgdipgvrfkvvkvanvsllalykgkke  114
DSSP  EEEEELLlllLLLLlllllleeellllllllllllllllleellllllllllllllllll


DSSP  l
Query r   65
ident  
Sbjct r  115
DSSP  l

No 2: Query=mol1A Sbjct=3eswA Z-score=2.2

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DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct ssglvprgshmnnidfdsiakmllikykdfilskfkkaapvenirfqnlvhtnqfaqgvl   60
DSSP  lllllllllllllllhhhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhlhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct gqsqhlctvydnpswhsivletldldliyknvdkefakdghaegeniytdylvkellryf  120
DSSP  hhhhhhllllllhhhhhhhhhhllhhhhhhhhhhhhhlllllllllhhhhhhhhhhhhhh


DSSP  -LLLLLLL--LLLL------LLLEEEEEEEEELLhHHHHHlhhhllLLEEEEEEELLLLE
Query -GSGMKEF--PCWL------VEEFVVAEECSPCSnFRAKTtpecgpTGYVEKITCSSSKR   51
ident      |    |          |         |      |        | ||   |     
Sbjct kQDFFKWCnkPDCNhcgqntSENMTPLGSQGPNG-EESKF-----nCGTVEIYKCNRCGN  174
DSSP  hHLLLEELllLLLLllllllLLLEEEEEEELLLH-HHHLL-----lEEEEEEEEELLLLL


DSSP  EEEEE-------------------------------------------------------
Query NEFKS-------------------------------------------------------   56
ident                                                             
Sbjct ITRFPryndpiklletrkgrxgewcnlftlilksfgldvryvwnredhvwceyfsnflnr  234
DSSP  EEEEEeellhhhhhhhleelhhhhhhhhhhhhhhlllleeeeeellleeeeeeeehhhle


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   56
ident                                                             
Sbjct wvhvdsceqsfdqpyiysinwnkkmsyciafgkdgvvdvskryilqnelprdqikeedlk  294
DSSP  eeeellllllllllhhhhllllllllleeeeelleeeelhhhhllllllllllllhhhhh


DSSP  ------------------------------llhhhhlll
Query ------------------------------crsalmeqr   65
ident                                        
Sbjct flcqfitkrlryslnddeiyqlacrdeqeqielirgktq  333
DSSP  hhhhhhhhhllllllhhhhhhhhhhhhhhhhhhhlllll

No 3: Query=mol1A Sbjct=1iz6A Z-score=2.1

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DSSP  ---------lllllllllLLLLLEEEEEEeEELLHhhhhhlhhhlllLEEEEEEELLLLE
Query ---------gsgmkefpcWLVEEFVVAEEcSPCSNfrakttpecgptGYVEKITCSSSKR   51
ident                      |           |                          
Sbjct gdktkvqvsklkpgryiiIDDEPCRIVNI-TVSSP------gkhgsaKARIEAVGIFDGK   53
DSSP  lleeeeehhhllllleeeELLEEEEEEEE-EELLL------llllllEEEEEEEELLLLL


DSSP  EEEEELLHHHH-------------------------------------------------
Query NEFKSCRSALM-------------------------------------------------   62
ident                                                             
Sbjct VRSIVKPTSAEvdvpiidkktaqviaitpdtvqimdmetyetfevpidtgvadeirdqlk  113
DSSP  EEEEEEELLLEeeeelleeeeeeeeeellleeeeelllllleeeeehhhhllhhhlllll


DSSP  --------------------lll
Query --------------------eqr   65
ident                        
Sbjct eginveywetlgrikimrikgeg  136
DSSP  llleeeeeeelleeeeeeellll

No 4: Query=mol1A Sbjct=1bkbA Z-score=2.1

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DSSP  LLLLLL------------lllLLLLLEEEEEEeEELLHhhhhhlhhhlllLEEEEEEELL
Query GSGMKE------------fpcWLVEEFVVAEEcSPCSNfrakttpecgptGYVEKITCSS   48
ident                         |   | |                             
Sbjct KWVXSTkyveagelkegsyvvIDGEPCRVVEI-EKSKT------gkhgsaKARIVAVGVF   53
DSSP  LLLLLLeeeehhhllllleeeELLEEEEEEEE-EEELL------llllllEEEEEEEELL


DSSP  LLEEEEEELLHHH-----------------------------------------------
Query SKRNEFKSCRSAL-----------------------------------------------   61
ident        |                                                    
Sbjct DGGKRTLSLPVDAqvevpiiekftaqilsvsgdviqlxdxrdyktievpxkyveeeakgr  113
DSSP  LLLEEEEEEELLLeeeellleeeeeeeeeellleeeeeellllleeeeehhhllhhhhll


DSSP  -------------------hlll
Query -------------------meqr   65
ident                        
Sbjct lapgaevevwqildrykiirvkg  136
DSSP  llllleeeeeeelleeeeeeell

No 5: Query=mol1A Sbjct=1ybyB Z-score=2.0

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DSSP  -----llllllllllLLLLEEEEEEeEELLHHhhhhlhhhlllLEEEEEEELLLLEEEEE
Query -----gsgmkefpcwLVEEFVVAEEcSPCSNFrakttpecgptGYVEKITCSSSKRNEFK   55
ident                    | | |                       |           |
Sbjct xisagdfkngvtfelDGQIFQVIEF-QHVKPG-------kgaaFVRTKLKNIVTGATIEK   52
DSSP  leehhhllllleeelLLLEEEEEEE-EEELLL-------llllEEEEEEEELLLLLEEEE


DSSP  ELLHHH------------------------------------------------------
Query SCRSAL------------------------------------------------------   61
ident                                                             
Sbjct TFNPTDkxpkahierkdxqylyndgdlyyfxdtetfeqlplgkdkigdalkfvkeneivk  112
DSSP  EELLLLeellllleeeeeeeeeeelleeeeelllllleeeeehhhhllllllllllleee


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   61
ident                                                             
Sbjct vlshkgnvfgieppnfvelevtdtepgfatkpaivetgasikvplfvnkgdiiridtrtg  172
DSSP  eeelllleeeeellleeeeeeeeellllleeeeeelllleeeeellllllleeeeellll


DSSP  --hlll
Query --meqr   65
ident       
Sbjct eyxerv  178
DSSP  eeeeel