Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1x4j-A 6.5 2.1 64 75 31 PDB MOLECULE: RING FINGER PROTEIN 38;
2: 1v87-A 4.1 2.5 63 114 27 PDB MOLECULE: DELTEX PROTEIN 2;
3: 2ckl-A 3.7 2.6 49 98 29 PDB MOLECULE: POLYCOMB GROUP RING FINGER PROTEIN 4;
4: 2f42-A 3.6 3.2 50 138 16 PDB MOLECULE: STIP1 HOMOLOGY AND U-BOX CONTAINING PROTEIN 1;
5: 2qiz-A 3.3 3.5 55 943 13 PDB MOLECULE: UBIQUITIN CONJUGATION FACTOR E4;
6: 3l11-A 2.9 2.6 51 104 31 PDB MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF168;
7: 2fd4-A 2.6 2.9 57 105 11 PDB MOLECULE: AVIRULENCE PROTEIN AVRPTOB;
8: 1rmd-A 2.4 3.1 49 116 27 PDB MOLECULE: RAG1;
9: 3fl2-A 2.4 2.7 50 116 20 PDB MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1;
10: 1z6u-A 2.4 2.9 50 115 20 PDB MOLECULE: NP95-LIKE RING FINGER PROTEIN ISOFORM B;
11: 2jrj-A 2.3 2.0 40 52 40 PDB MOLECULE: RING FINGER AND CHY ZINC FINGER DOMAIN
12: 2db6-A 2.2 9.6 58 74 14 PDB MOLECULE: SH3 AND CYSTEINE RICH DOMAIN 3;
13: 3fc3-A 2.2 10.7 55 189 9 PDB MOLECULE: RESTRICTION ENDONUCLEASE HPY99I;
14: 2jtn-A 2.1 2.0 44 182 18 PDB MOLECULE: LIM DOMAIN-BINDING PROTEIN 1, LIM/HOMEOBOX
15: 1uw0-A 2.0 3.0 51 117 18 PDB MOLECULE: DNA LIGASE III;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1x4jA Z-score=6.5
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DSSP llllllllllllllllllhhhhhLLLEEELLLLLllLLLLLEELLLLEELLLLLEEEEEL Query mghhhhhhshmvanppaskesidALPEILVTEDHgaVGQEMCCPICCSEYVKGDVATELP 60 ident || | | || Sbjct ----------------gssgssgQLPSYRFNPNN-hQSEQTLCVVCMCDFESRQLLRVLP 43 DSSP ----------------lllllllLLLLEELLLLL-lLLLLLEELLLLEELLLLLEEEEEL DSSP LLEEEEHHHHHHHHLLLLLLLLLLLLLLL-ll Query CHHYFHKPCVSIWLQKSGTCPVCRCMFPP-pl 91 ident | | || || || ||| || | Sbjct CNHEFHAKCVDKWLKANRTCPICRADSGPssg 75 DSSP LLEEEELLHHHHHHHHLLLLLLLLLLLLLlll
DSSP lllllllllllllllllLHHHHHL-LLEEELlllllLLLLllEELLLLEELL-------- Query mghhhhhhshmvanppaSKESIDA-LPEILVtedhgAVGQemCCPICCSEYV-------- 51 ident | | | | | || Sbjct ---------gssgssgePEQVIRKyTEELKV-----APEE--DCIICMEKLAvasgysdm 44 DSSP ---------llllllllHHHHHHHhEEELLL-----LLLL--EELLLLEELLllllllll DSSP ------llLEEEEEL-LLEEEEHHHHHHHHLL-----lLLLLLLLLLlLLLL-------- Query ------kgDVATELP-CHHYFHKPCVSIWLQK-----sGTCPVCRCMfPPPL-------- 91 ident | | | | || | || | Sbjct tdskalgpMVVGRLTkCSHAFHLLCLLAMYCNgnkdgsLQCPSCKTI-YGEKtgtqpwgk 103 DSSP llllllllLLLEEELlLLLEELHHHHHHHHHHllllllLLLLLLLLL-LLLLllllllll DSSP ----------- Query ----------- 91 ident Sbjct mevfrsgpssg 114 DSSP lllllllllll
DSSP llllllllllllllllllhhhhhllleeelllLLLLlllLLEELLLLEEllllLEEEEEL Query mghhhhhhshmvanppaskesidalpeilvteDHGAvgqEMCCPICCSEyvkgDVATELP 60 ident | | || Sbjct ---------------------------rikitELNP---HLMCVLCGGY---fIDATTII 27 DSSP ---------------------------leehhHHHH---HLLLLLLLLL---lLLEEEEL DSSP -LLEEEEHHHHHHHHLLLLLLLLLLLLLL------------------------------- Query -CHHYFHKPCVSIWLQKSGTCPVCRCMFP------------------------------- 88 ident | | | | | | | || | Sbjct eCLHSFCKTCIVRYLETSKYCPICDVQVHktrpllnirsdktlqdivyklvpglfknemk 87 DSSP lLLLEEEHHHHHHHHLLLLLLLLLLLLLLlllhhhheeelhhhhhhhhhhlllhhhhhhh DSSP --------lll Query --------ppl 91 ident Sbjct rrrdfyaahps 98 DSSP hhhhhhhhlll
DSSP ------------------------------llllllllllllllllllhhhhhllleeel Query ------------------------------mghhhhhhshmvanppaskesidalpeilv 30 ident Sbjct akkkrwnsieekrisqenelhaylsklilaekerelddskhdkylmdmdelfsqvdekrk 60 DSSP llllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhhhhhh DSSP lLLLLLlllLLEELLLLEEllllLEEEEELLLEEEEHHHHHHHHL-LLLLLLLLLLLLL- Query tEDHGAvgqEMCCPICCSEyvkgDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP- 88 ident | | | || || | Sbjct kREIPD---YLCGKISFEL---mREPCITPSGITYDRKDIEEHLQrVGHFDPVTRSPLTq 114 DSSP lLLLLH---HHLLLLLLLL---lLLEEELLLLLEEEHHHHHHHHHhLLLLLLLLLLLLLh DSSP ---------------------lll Query ---------------------ppl 91 ident Sbjct dqlipnlamkevidafiqengwve 138 DSSP hhleelhhhhhhhhhhhhhlllll
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct gsefrsmtaiedilqittdpsdtrgysllkseegvdfidtlllyqltenekldkpfeyln 60 DSSP lllhhhhhhhhhhhleellllllllleellllllhhhhhhhhhhhhhlllllllhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct dcfrrnqqqkritknkpnaeslhstfqeidrlvigygvvalqienfcmngafinyitgiv 120 DSSP hhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhhhhhhlllllllllllhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct snvnsytdflsqiiqrailegtaldllnavfptlleycnkhvshfdlnesviynnvltif 180 DSSP hlhhhlhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhlllllllllhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct elfvtfkpiaeiftkidgffadysckpqdferktilgpilslspieaavairnygdnllr 240 DSSP hhhhllhhhhllhhhlllllllllllhhhhhhhlllhhhhllllllhhhhhhhhllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct skqqtamiheslqaehkvvidrlffivdklvrgslnsrtdmisyfahianknhlrradhp 300 DSSP lhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlhhhhhhhhhhhhhhhhllhhhhllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct pfkelssngfmsnitlllvrfsqpfldisykkidkidanyfnnpslfidlsgetrlnsdf 360 DSSP lhhhlllhhhhhhhhhhhhhhhhhhhllllllhhhllllllllllllllllllllllllh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct keadafydknrktadskpnfisdcffltltylhyglggtlsfeekmgseikalkeeiekv 420 DSSP hhhhhhhhhllllllllllhhhhhhhhhhhhhhhlhhhhhhhhhlhhhhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct kkiaanhdvfarfitaqlskmekalktteslrfalqgffahrslqlevfdficgastfli 480 DSSP lllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct rvvdpehefpfkqiklplipdqigvenvdnadflrahapvpfkyypefvvegpvnyslyi 540 DSSP hhhllllllllllllllllllllllllllhhhhhhhlllllhhhlllhhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct skyqtspifrnprlgsfvefttmvlrcpelvsnphlkgklvqllsvgampltdnspgfmm 600 DSSP lllllllllllllhhhhhhhhhhhhhlllllllhhhhhhhhhhhhhhhlllllllllllh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct difehdelvnknllyalldfyvivektgsssqfydkfnsrysisiileelyykipsyknq 660 DSSP hhhhhlhhhhllhhhhhhhhhhhhhhlllllllllhhhhhhhhhhhhhhhhhhlhhhhhh DSSP ---lLLLLLL-------------------------------------------------- Query ---mGHHHHH-------------------------------------------------- 7 ident Sbjct liwqSQNNADffvrfvarmlndltflldeglsnlaevhniqneldneedkelqtrlasas 720 DSSP hhhhHHHLHHhhhhhhhhhhhhhllhhhhhhhhhhhhhhhhhhlllllllhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 7 ident Sbjct rqaksscgladksmklfeiyskdipaafvtpeivyrlasmlnynleslvgpkcgelkvkd 780 DSSP hhhhhhhhhhhhhhhhhhhhhlllhhhhlllllhhhhhhhhhhhhhhhhlhhhhllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 7 ident Sbjct pqsysfnpkdllkalttvyinlseqsefisavakdersfnrnlfvravdilgrktglasp 840 DSSP hhhhlllhhhhhhhhhhhhhhhlllhhhhhhhhhllllllhhhhhhhhhhhlllllllll DSSP ----lllllllllllhhhhhllleeellLLLLLllllLEELLLLEEllllLEEEEELL-L Query ----hshmvanppaskesidalpeilvtEDHGAvgqeMCCPICCSEyvkgDVATELPC-H 62 ident | || Sbjct efiekllnfankaeeqrkadeeedleygDVPDE----FLDPLMYTI---mKDPVILPAsK 893 DSSP hhhhhhhhhhhhhhhhhhhhhhhhhhhlLLLHH----HLLLLLLLL---lLLEEELLLlL DSSP EEEEHHHHHHHHLLLLLLLLLLLLLL---------------------lll Query HYFHKPCVSIWLQKSGTCPVCRCMFP---------------------ppl 91 ident | | | | Sbjct MNIDRSTIKAHLLSDSTDPFNRMPLKledvtpneelrqkilcfkkqkkee 943 DSSP LEEEHHHHHHHHLLLLLLLLLLLLLLhhhleelhhhhhhhhhhhhhllll
DSSP llllllllllllllllllhhhhhllleeellLLLLLlllLLEELLLLEEllllLEEEEEL Query mghhhhhhshmvanppaskesidalpeilvtEDHGAvgqEMCCPICCSEyvkgDVATELP 60 ident | | || || Sbjct -----------------------smalpkdaIPSLS---ECQCGICMEI---lVEPVTLP 31 DSSP -----------------------llllllllLLLHH---HHLLLLLLLL---lLLLEELL DSSP LLEEEEHHHHHHHH-LLLLLLLLLLLLLLL------------------------------ Query CHHYFHKPCVSIWL-QKSGTCPVCRCMFPP------------------------------ 89 ident | | ||| | || || Sbjct CNHTLCKPCFQSTVeKASLCCPFCRRRVSSwtryhtrrnslvnvelwtiiqkhypreckl 91 DSSP LLLEELHHHHHHHLlLLLLLLLLLLLLLHHhhhhhhhllllllhhhhhhhhhhlhhhhhh DSSP -----------ll Query -----------pl 91 ident Sbjct rasgyqpvrllsk 104 DSSP hhhllllllllll
DSSP llllllllllllllllllHHHHHLLL---eeelllLLLL-llllLEELLLlEELLLL--- Query mghhhhhhshmvanppasKESIDALP---eilvteDHGA-vgqeMCCPICcSEYVKG--- 53 ident | | Sbjct -------------klaalDPIASQFSqlrtiskalGFKDaaddvTHCLFG-GELSLSnpd 46 DSSP -------------lllllLLLHHHHHhleeeelllLLLLlllllLLLLLL-LLLLLLlll DSSP LEEEEELLL-----------eeEEHHHHHHHHLLLLLLLLLLLLLL----------lll Query DVATELPCH-----------hyFHKPCVSIWLQKSGTCPVCRCMFP----------ppl 91 ident | | | | Sbjct QQVIGLAGNptdtsqpysdlafMDMKKLAQFLAGKPEHPMTRETLNaeniakyafrivp 105 DSSP LLEEEEELLlllllllllleeeEEHHHHHHHHHHLLLLLLLLLLLLlllhhhheeeeel
DSSP llllllllllllllllllhhhhhllleeelllLLLLlllLLEELLLLEEllllLEEEEEL Query mghhhhhhshmvanppaskesidalpeilvteDHGAvgqEMCCPICCSEyvkgDVATELP 60 ident | || | Sbjct --------------ncskihlstkllavdfpaHFVK---SISCQICEHI---lADPVETS 40 DSSP --------------lhhhllllhhhllllllhHHHH---HLLLLLLLLL---lLLEEELL DSSP LLEEEEHHHHHHHHL-LLLLLLLLLLLLL------------------------------- Query CHHYFHKPCVSIWLQ-KSGTCPVCRCMFP------------------------------- 88 ident | | | | | || || Sbjct CKHLFCRICILRCLKvMGSYCPSCRYPCFptdlespvksflnilnslmvkcpaqdcneev 100 DSSP LLLEEEHHHHHHHHHhLLLLLLLLLLLLLhhhlllllhhhhhhhhhleeellllllllee DSSP -------------lll Query -------------ppl 91 ident Sbjct slekynhhvsshkesk 116 DSSP ehhhhhhhhhllllll
DSSP ------llllllllllllllllllhhhhhllleeellLLLLLlllLLEELLLLEEllllL Query ------mghhhhhhshmvanppaskesidalpeilvtEDHGAvgqEMCCPICCSEyvkgD 54 ident | | Sbjct sltaqqssliredksnaklwnevlasrpasgspfqlfLSKVE--eTFQCICCQEL---vF 55 DSSP lllhhhhhhhhhlhhhhhhhhhhhhlllllllhhhhhHHHHH--hHLLLLLLLLL---lL DSSP EEEEELLLEEEEHHHHHHHHLL-LLLLLLLLLLLL-----------------------ll Query VATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP-----------------------pp 90 ident | | | | || || Sbjct RPITTVCQHNVCKDCLDRSFRAqVFSCPACRYDLGrsyamqvnqplqtvlnqlfpgygng 115 DSSP LEEELLLLLEEEHHHHHHHHHLlLLLLLLLLLLLLllllllllhhhhhhhhhhlllllll DSSP l Query l 91 ident Sbjct r 116 DSSP l
DSSP ------llllllllllllllllllhhhhhllleeellLLLLLlllLLEELLLLEEllllL Query ------mghhhhhhshmvanppaskesidalpeilvtEDHGAvgqEMCCPICCSEyvkgD 54 ident | | Sbjct eafqltpqqqhliredcqnqklwdevlshlvegpnflKKLEQ---SFMCVCCQEL---vY 54 DSSP llllllhhhhhhhhhlhhhhhhhhhhhhhhhhhhhhhHHHHH---HLLLLLLLLL---lL DSSP EEEEELLLEEEEHHHHHHHHLL-LLLLLLLLLLLL-----------------------ll Query VATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP-----------------------pp 90 ident | | | | || || Sbjct QPVTTECFHNVCKDCLQRSFKAqVFSCPACRHDLGqnyimipneilqtlldlffpgyskg 114 DSSP LEEELLLLLEEEHHHHHHHHHLlLLLLLLLLLLLLllllllllhhhhhhhhhhlllllll DSSP l Query l 91 ident Sbjct r 115 DSSP l
DSSP llllllllllllllllllhhhhhllleeellllllllllLLEELLLLEEL-llllEEEEE Query mghhhhhhshmvanppaskesidalpeilvtedhgavgqEMCCPICCSEY-vkgdVATEL 59 ident |||| || | Sbjct -----------------------------------envsQQNCPICLEDIhtsrvVAHVL 25 DSSP -----------------------------------llllLLEELLLLEELlllllLEEEL DSSP LLLEEEEHHHHHHHHLLLLLLLLLllllllll Query PCHHYFHKPCVSIWLQKSGTCPVCrcmfpppl 91 ident || | | | | || | Sbjct PCGHLLHRTCYEEMLKEGYRCPLC-----mhs 52 DSSP LLLLEEEHHHHHHHHHHLLLLHHH-----hll
DSSP --llLLLLllllLLLLLLLlhhhhhlLLEEELlllLLLLllllEELLLLEELL-LLLEEE Query --mgHHHHhhshMVANPPAskesidaLPEILVtedHGAVgqemCCPICCSEYV-KGDVAT 57 ident | | | | Sbjct gssgSSGE--ppKLVNDKP-----hkFKDHFF---KKPK----FCDVCARMIVlNNKFGL 46 DSSP llllLLLL--llLLLLLLL-----llEEEEEL---LLLE----ELLLLLLEELhHHHEEE DSSP EELL-LEEEEHHHHHHHHllLLLLlllllllllll Query ELPC-HHYFHKPCVSIWLqkSGTCpvcrcmfpppl 91 ident | | | | Sbjct RCKNcKTNIHEHCQSYVE--MQRC-----sgpssg 74 DSSP EELLlLLEELLLLLHHHL--LLLL-----llllll
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct mlknddfviaknqlgnivpnsvgviravngksamvlfiglnelkrvdfseleaidiyrtg 60 DSSP lllllleeeellllllllllleeeeeeeelleeeeeelllleeeeeehhheeellhhhll DSSP -LLLLLLLL---------------------------LLLL----llllllhhhhhlllee Query -MGHHHHHH---------------------------SHMV----anppaskesidalpei 28 ident Sbjct kGYDKKICNichilkntdgfeinqtdakgrkttrpsCRECrknidgvklsstekkkmdei 120 DSSP lLLLEEELLlllleeehhhlleeeellllleeelllLHHHhhhhhlllllhhhhhhhhhl DSSP elLLLLLlllllLEELLLLEELL--LLLEEEEEL------LLEEEEHHHHHHHHLLLL-- Query lvTEDHGavgqeMCCPICCSEYV--KGDVATELP------CHHYFHKPCVSIWLQKSG-- 78 ident |||| | Sbjct apPKGSV-----FTCPICEKRSIvgVTANLVHDHnhdtgwGREWICDSCNTGLGRFKDnp 175 DSSP llLLLLE-----EELLLLLLEEEllLLLLEEEEEllllllEEEEEEHHHHHHHHHLLLlh DSSP -lllllllllllll Query -tcpvcrcmfpppl 91 ident Sbjct kflekvieylkkye 189 DSSP hhhhhhhhhhhhll
DSSP llllllllllllllllllhhhhhllLEEELLLL--------------------------- Query mghhhhhhshmvanppaskesidalPEILVTED--------------------------- 33 ident | | Sbjct --------------------ssqvpDVMVVGEPtlmggefgdederlitrlentqfdaan 40 DSSP --------------------lllllLLEELLLLllllllllllllllleeeellllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 33 ident Sbjct giddeggsgghmgsggtpeipmcagcdqhildrfilkaldrhwhskclkcsdchvplaer 100 DSSP llllllllllllllllllllllllllllllllleeeeelleeelllllllllllllllll DSSP ----------------------------------------llllllLLEELLLLEELLLL Query ----------------------------------------hgavgqEMCCPICCSEYVKG 53 ident | | | Sbjct cfsrgesvyckddffkrfgtkcaacqlgipptqvvrraqdfvyhlhCFACVVCKRQLATG 160 DSSP leeelleeelhhhhhhlllllllllllllllllllleelleellllLLLLLLLLLLLLLL DSSP LEEEEELLLEEEEHHHHHHHHLllllllllllllllll Query DVATELPCHHYFHKPCVSIWLQksgtcpvcrcmfpppl 91 ident | | | Sbjct DEFYLMEDSRLVCKADYETAKQ---------------- 182 DSSP LEEEELLLLLEELHHHHHHHLL----------------
DSSP llllllllllllllllllhhhhhlLLEEELLlLLLLlllllEELLLLEELLLLLEEEEEL Query mghhhhhhshmvanppaskesidaLPEILVTeDHGAvgqemCCPICCSEYVKGDVATELP 60 ident | | | ||| Sbjct -------------------maeqrFCVDYAK-RGTA-----GCKKCKEKIVKGVCRIGKV 35 DSSP -------------------lllleEEEEELL-LLLE-----ELLLLLLEELLLLEEEEEE DSSP L-----------LEEEEHHHHHHHHLLLllllllllLLLL-------------------- Query C-----------HHYFHKPCVSIWLQKSgtcpvcrcMFPP-------------------- 89 ident | | | Sbjct VpnpfsesggdmKEWYHIKCMFEKLERA----rattKKIEdltelegweelednekeqit 91 DSSP EelllllllleeLLLLLHHHHHHHHHHL----llllLLLLllllllllllllhhhhhhhh DSSP ------------------------ll Query ------------------------pl 91 ident Sbjct qhiadlsskaagtpkkkavvqakltt 117 DSSP hhhhhhhlllllllllllllllllll