Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3idu-A 12.9 2.2 104 116 29 PDB MOLECULE: UNCHARACTERIZED PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3iduA Z-score=12.9
back to top
DSSP -----------LLLLEEEeEEEL-LEELLLLEEEEEEEEEELLLLLLLLEEEEEEELLEE Query -----------MIPDLVPvSLTP-VTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIV 48 ident ||| | | | | | | | Sbjct tdydklsnltfEFPDLTV-EIKGpDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTL 59 DSSP lllllllllllLLLLEEE-EEELlLEELLLLLEEEEEEEEELLLLLEEEEEEEEEELLEE DSSP EEEEEElLLLLLLEEEEEEEEELLLlLLEEEEEEEELLLLLLLLLLHHHLEEEEEEEELl Query VDTQTVtSLESENSTNVDFHWTLDGtANSYTLTVNVDPENAVNEGNESNNTLTALVGTLe 108 ident || || | || | || || | | || || | | Sbjct YKNWTV-SLGPKEEKVLTFNWTPTQ-EGXYRINATVDEENTVVELNENNNVATFDVSVV- 116 DSSP EEEEEE-EELLLLEEEEEEEELLLL-LEEEEEEEEELLLLLLLLLLLLLLEEEEEEEEL- DSSP llllll Query hhhhhh 114 ident Sbjct ------ 116 DSSP ------