Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3dla-C 31.4 19.2 296 657 27 PDB MOLECULE: GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3dlaC Z-score=31.4
back to top
DSSP ---------LEEEEEEEEELLLLLLLHHHHHHHHHHHHHHHHLLLLLEEELLLLLLLLLL Query ---------SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYP 51 ident | | | || | || | | || | ||| | || Sbjct smnfysayqHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYS 60 DSSP lllllllllLLEEEEEEEELLLLLLLHHHHHHHHHHHHHHHHHLLLLEEELLLLLLLLLL DSSP LHHHHHLHHHHHHHHHHHHHHHHHHHhllLLLLLEEEEEEEELLllllllllllLLEEEE Query VEDLALRSSFVEASRTALRELAARLAeegFGELPVLVGYLDRSEsaqpkygqpaGAPRNA 111 ident || | | | || | | || | | Sbjct IEDVLLQDSLLDAVEDALLDLVTESA---DLLPVLVVGAPLRHR----------HRIYNT 107 DSSP LHHHHHLHHHHHHHHHHHHHHHHHHL---LLLLEEEEEEEEEEL----------LEEEEE DSSP EEEEELLEEEEEEELLLLLLLLLLLHHHHLLLLL----------------EEEEEEE--- Query AAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGD----------------TMPIVRL--- 152 ident | | ||| | | || | | | | ||| | Sbjct AVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDgergtiriggadvafgTDLLFAAsdl 167 DSSP EEEEELLEEEEEEELLLLLLLLLLLHHHHEELLLlllleeeelleeeellLLEEEEElll DSSP LLEEEEEEEHHHHHLLLLHHHHHHHLLLLEEEEEELLLLLLLLLLHHHHHHHHHHHHHLL Query HGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGC 212 ident | |||| | ||| | || | | | Sbjct PGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLA 227 DSSP LLLEEEEEEHHHHHLLLLHHHHHHHHLLLEEEEELLLLLLLLHHHHHHHHHHHHHHHLLL DSSP EEEEEELEE-EELL-EEEELLLEEELLlLLEEEELLLLL--LEEEEEEEEEL-------- Query TTAYLAMIG-GQDE-LVFDGDSIVVDRdGEVVARAPQFS--EGCVVLDLDLP-------- 260 ident | | | || | | | | | | Sbjct AYVYAAAGEgESTTdLAWDGQTMIWEN-GALLAESERFPkgVRRSVADVDTEllrserlr 286 DSSP EEEEELLLLlLLLLlLLLLLLEEEEEL-LEEEEELLLLLllLEEEEEEEEHHhhhhhhhh DSSP --------lllllLLLLlllllleEEEEELLlllLLLLLLLLL----------------- Query --------aaeaePPTGvvddglrIDRLVISeepLPAYEAELA----------------- 295 ident | | Sbjct mgtfddnrrhhreLTES-------FRRIDFAldpPAGDIGLLReverfpfvpadpqrlqq 339 DSSP lhhhhhhhhhlhhHHHL-------LEEEEELlllLLLLLLLLLlllllllllllhhhhhh DSSP --------------llllllllhhhhhhhhhhhhhhhhhhlllllleeeellllhhhhhh Query --------------ggyadrldadeevysalvvglrayvakngfrsvliglsggidsalv 341 ident Sbjct dcyeayniqvsgleqrlraldypkvvigvsggldsthalivathamdregrprsdilafa 399 DSSP hhhhhhhhhhhhhhhhhhhlllleeeeellllhhhhhhhhhhhhhhhhllllhhheeeee DSSP hhhhhhhhlhhheeeeelllLLLLHHHHHHHhhhhhhhlleeeelllhhhhhhhhhhhll Query aaiacdalgaqnvygvsmpsKYSSDHSKGDAaelarrtglnfrtvsiepmfdaymaslgl 401 ident Sbjct lpgfknnaiklaralgvtfsEIDIGDTARLM-lhtighpysvgekvydvtfenvqaglrt 458 DSSP lllllhhhhhhhhhhlleeeELLLHHHHHHH-hhhhllhhhhllllllhhhhhhhhhhhh DSSP llHHHHHHHHHhhhhhhhhhhhhhlleelllllhhhhhhllllllllllllllllllllh Query tgLAEENLQSRlrgttlmaisnqeghivlapgnkselavgystlygdsvgaygpikdvyk 461 ident | | Sbjct dyLFRIANQRG------------------------------------------------- 469 DSSP hhHHHHHHHHL------------------------------------------------- DSSP hhhhhhhhhhhhhhhhllllllllhhhhllllhhhhhhhhhhhhlllllhHHHHhlLLLH Query tsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgaDAIVaaGYDR 521 ident | Sbjct --------givlgtgdlselalgwstygvgdqmshynvnagvpktliqhlIRWV-iSAGE 520 DSSP --------eeeeelllhhhhhhllllllllllllleellllllhhhhhhhHHHH-hHHLL DSSP HH---------------------------------------------------------- Query EL---------------------------------------------------------- 523 ident Sbjct FGekvgevlqsvldteakvgpfalqdfslfqvlrygfrpskiaflawhawndaergnwpp 580 DSSP LLhhhhhhhhhhhhhllllllhhhhhhhhhhhhhhlllhhhhhhhhhhhhllllllllll DSSP --------------------------------hhhhhhhhhhlhhhhhllllllllllll Query --------------------------------vvktlrmvdtaeykrrqyppgtkisakg 551 ident Sbjct gfpkserpsyslaeirhwlqifvqrfysfsqfkrsalpngpkvshggalsprgdwrapsd 640 DSSP lllhhhlllllhhhhhhhhhhhhhhhhlllhhhhhlllllllllllllllllllllllll DSSP lllllllllllllllll Query fgkdrrlpitnrwregh 568 ident Sbjct msariwldqidrevpkg 657 DSSP lllhhhhhhhhhhllll