Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2gsn-A 43.6  1.8  354   382   31 PDB  MOLECULE: PHOSPHODIESTERASE-NUCLEOTIDE PYROPHOSPHATASE;              


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2gsnA Z-score=43.6

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DSSP  lllllllllllllllllllllllllllllllllhhhhhllllllllllhhhlllllllll
Query gsckgrcfelqevgppdcrcdnlcksysscchdfdelclktargwectkdrcgevrneen   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  llllllllhhhllllllhhhhhhllllhhhlllllllllllllllLLLLEEEEEEELLLH
Query achcsedclsrgdcctnyqvvckgeshwvdddceeikvpecpagfVRPPLIIFSVDGFRA  120
ident                                                  |   | || ||
Sbjct ---------------------------------------------TPHALLLISIDGLRA   15
DSSP  ---------------------------------------------LLLEEEEEEELLLLH


DSSP  HHHHHLllLLHHHHHHHHHLEELLLEELLLLLLHHHHHHHHHHLLLHHHHLLLLLLEEEL
Query SYMKKGskVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDP  180
ident      |    ||   |   |  |  | | ||  |||| ||| ||| |  |||| ||| ||
Sbjct DMLDRG--ITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNSMRDP   73
DSSP  HHHHLL--LLHHHHHHHHHLEEELLEELLLLLLHHHHHHHHHHLLLHHHHLLLLLLEEEL


DSSP  LLlEEELLLLL-HHHLHHHLLLLLHHHHHHHLLLLLLLLL------------------LL
Query VFdASFHLRGR-EKFNHRWWGGQPLWITATKQGVRAGTFF------------------WS  221
ident      | |         ||||| | |      |  | |                      
Sbjct TL-GGFWLSKSeAVGDARWWGGEPVWVGVENTGQHAATWSwpgseaaikgvrpsqwrhYQ  132
DSSP  LL-EEELLLLHhHHLLHHHLLLLLHHHHHHLLLLEEEELLllllllllllllllllllLL


DSSP  LLLLHHHHHHHHHHHHLLLLLLLLLEEEEEEEEEHHHHHHHLLLLHHHHHHHHHHHHHHH
Query VSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVG  281
ident        |      ||      |      | |  |  ||  ||         |  |   |
Sbjct KGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIG  192
DSSP  LLLLHHHHHHHHHHHHHLLHHHLEEEEEEEELHHHHHHHHHLLLLHHHHHHHHHHHHHHH


DSSP  HHHHHHHHLLLLLLLEEEEEELLLLEELLLLLEEEHHHLLlLLLLEEE-ELLLEEEEEEL
Query QLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLtNVDDITL-VPGTLGRIRAK  340
ident  |  |          | | | ||||  |                  |    |        
Sbjct RLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIA-PPQIATAiTDGQVIGFEPL  251
DSSP  HHHHHHHHHLLHHHEEEEEELLLLLEEELLLLEEEHHHHL-LLLLEEElLLLLEEEEEEL


DSSP  LllLLHHHHHHHLLLlllLLLEEEEEHHHLLHHHLLLLLLLLLLEEEEELLLLEEELLL-
Query SiaYDPKTIIAALTCkkpDQHFKPYMKQHLPKRLHYANNRRIEDIHLLVDRRWHVARKP-  399
ident           |         |     |  || |  |    ||          |       
Sbjct P--GQQAAAEASVLG--aHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWDALFPDk  307
DSSP  L--LLHHHHHHHHLE--eLLLEEEEEHHHLLHHHLLLLLLLLLLEEEEELLLLEEELHHh


DSSP  ------LLLLEELLLLLLLHHHLLLEEEELLLLLLLEELLLEEHHHHHHHHHHHHLLLLL
Query ------CFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPA  453
ident           | || |    ||  ||   ||        | | |   |  |  |||   |
Sbjct lakraqRGTRGSHGYDPALPSMRAVFLAQGPDLAQGKTLPGFDNVDVYALMSRLLGIPAA  367
DSSP  hhhlllLLLEEELLLLLLLHHHLLLEEEELLLLLLLEEELLEEHHHHHHHHHHHHLLLLL


DSSP  LLLLLLLLLHHHLLLllllllllllllllllllllllhhhllllllllllllllllllll
Query PNNGTHGSLNHLLRTntfrptmpdevsrpnypgimylqsefdlgctctkleelnkrlhtk  513
ident || |    |   ||                                              
Sbjct PNDGNPATLLPALRM---------------------------------------------  382
DSSP  LLLLLLLLLHHHLLL---------------------------------------------


DSSP  llhhhhhlllllleellllleeeeelllleeeeelllleeeeeeeeellllllllllhhh
Query gsteerhllygrpavlyrtsydilyhtdfesgyseiflmplwtsytiskqaevssipehl  573
ident                                                             
Sbjct ------------------------------------------------------------  382
DSSP  ------------------------------------------------------------


DSSP  lllllllllllhhhlllhhhhhhlllleeeelllhhhlllhhhhhhhllhhheeeelhhh
Query tncvrpdvrvspgfsqnclaykndkqmsygflfppylssspeakydaflvtnmvpmypaf  633
ident                                                             
Sbjct ------------------------------------------------------------  382
DSSP  ------------------------------------------------------------


DSSP  hhhhhhhhhlhhhhhhhhhlleeeeeeeelllllllllllhhhlllllllllllllleee
Query krvwayfqrvlvkkyaserngvnvisgpifdynydglrdtedeikqyvegssipvpthyy  693
ident                                                             
Sbjct ------------------------------------------------------------  382
DSSP  ------------------------------------------------------------


DSSP  eeeeeellllllhhhlllleeeeeeeeellllllllllllllhhhlhhhhhhhleelhhh
Query siitscldftqpadkcdgplsvssfilphrpdndescassedeskwveelmkmhtarvrd  753
ident                                                             
Sbjct ------------------------------------------------------------  382
DSSP  ------------------------------------------------------------


DSSP  hhhhhleellllllllhhhhhhhhhllllll
Query iehltgldfyrktsrsyseiltlktylhtye  784
ident                                
Sbjct -------------------------------  382
DSSP  -------------------------------