Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2gsn-A 43.6 1.8 354 382 31 PDB MOLECULE: PHOSPHODIESTERASE-NUCLEOTIDE PYROPHOSPHATASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2gsnA Z-score=43.6
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DSSP lllllllllllllllllllllllllllllllllhhhhhllllllllllhhhlllllllll Query gsckgrcfelqevgppdcrcdnlcksysscchdfdelclktargwectkdrcgevrneen 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP llllllllhhhllllllhhhhhhllllhhhlllllllllllllllLLLLEEEEEEELLLH Query achcsedclsrgdcctnyqvvckgeshwvdddceeikvpecpagfVRPPLIIFSVDGFRA 120 ident | | || || Sbjct ---------------------------------------------TPHALLLISIDGLRA 15 DSSP ---------------------------------------------LLLEEEEEEELLLLH DSSP HHHHHLllLLHHHHHHHHHLEELLLEELLLLLLHHHHHHHHHHLLLHHHHLLLLLLEEEL Query SYMKKGskVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDP 180 ident | || | | | | | || |||| ||| ||| | |||| ||| || Sbjct DMLDRG--ITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNSMRDP 73 DSSP HHHHLL--LLHHHHHHHHHLEEELLEELLLLLLHHHHHHHHHHLLLHHHHLLLLLLEEEL DSSP LLlEEELLLLL-HHHLHHHLLLLLHHHHHHHLLLLLLLLL------------------LL Query VFdASFHLRGR-EKFNHRWWGGQPLWITATKQGVRAGTFF------------------WS 221 ident | | ||||| | | | | | Sbjct TL-GGFWLSKSeAVGDARWWGGEPVWVGVENTGQHAATWSwpgseaaikgvrpsqwrhYQ 132 DSSP LL-EEELLLLHhHHLLHHHLLLLLHHHHHHLLLLEEEELLllllllllllllllllllLL DSSP LLLLHHHHHHHHHHHHLLLLLLLLLEEEEEEEEEHHHHHHHLLLLHHHHHHHHHHHHHHH Query VSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVG 281 ident | || | | | | || || | | | Sbjct KGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIG 192 DSSP LLLLHHHHHHHHHHHHHLLHHHLEEEEEEEELHHHHHHHHHLLLLHHHHHHHHHHHHHHH DSSP HHHHHHHHLLLLLLLEEEEEELLLLEELLLLLEEEHHHLLlLLLLEEE-ELLLEEEEEEL Query QLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLtNVDDITL-VPGTLGRIRAK 340 ident | | | | | |||| | | | Sbjct RLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIA-PPQIATAiTDGQVIGFEPL 251 DSSP HHHHHHHHHLLHHHEEEEEELLLLLEEELLLLEEEHHHHL-LLLLEEElLLLLEEEEEEL DSSP LllLLHHHHHHHLLLlllLLLEEEEEHHHLLHHHLLLLLLLLLLEEEEELLLLEEELLL- Query SiaYDPKTIIAALTCkkpDQHFKPYMKQHLPKRLHYANNRRIEDIHLLVDRRWHVARKP- 399 ident | | | || | | || | Sbjct P--GQQAAAEASVLG--aHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWDALFPDk 307 DSSP L--LLHHHHHHHHLE--eLLLEEEEEHHHLLHHHLLLLLLLLLLEEEEELLLLEEELHHh DSSP ------LLLLEELLLLLLLHHHLLLEEEELLLLLLLEELLLEEHHHHHHHHHHHHLLLLL Query ------CFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPA 453 ident | || | || || || | | | | | ||| | Sbjct lakraqRGTRGSHGYDPALPSMRAVFLAQGPDLAQGKTLPGFDNVDVYALMSRLLGIPAA 367 DSSP hhhlllLLLEEELLLLLLLHHHLLLEEEELLLLLLLEEELLEEHHHHHHHHHHHHLLLLL DSSP LLLLLLLLLHHHLLLllllllllllllllllllllllhhhllllllllllllllllllll Query PNNGTHGSLNHLLRTntfrptmpdevsrpnypgimylqsefdlgctctkleelnkrlhtk 513 ident || | | || Sbjct PNDGNPATLLPALRM--------------------------------------------- 382 DSSP LLLLLLLLLHHHLLL--------------------------------------------- DSSP llhhhhhlllllleellllleeeeelllleeeeelllleeeeeeeeellllllllllhhh Query gsteerhllygrpavlyrtsydilyhtdfesgyseiflmplwtsytiskqaevssipehl 573 ident Sbjct ------------------------------------------------------------ 382 DSSP ------------------------------------------------------------ DSSP lllllllllllhhhlllhhhhhhlllleeeelllhhhlllhhhhhhhllhhheeeelhhh Query tncvrpdvrvspgfsqnclaykndkqmsygflfppylssspeakydaflvtnmvpmypaf 633 ident Sbjct ------------------------------------------------------------ 382 DSSP ------------------------------------------------------------ DSSP hhhhhhhhhlhhhhhhhhhlleeeeeeeelllllllllllhhhlllllllllllllleee Query krvwayfqrvlvkkyaserngvnvisgpifdynydglrdtedeikqyvegssipvpthyy 693 ident Sbjct ------------------------------------------------------------ 382 DSSP ------------------------------------------------------------ DSSP eeeeeellllllhhhlllleeeeeeeeellllllllllllllhhhlhhhhhhhleelhhh Query siitscldftqpadkcdgplsvssfilphrpdndescassedeskwveelmkmhtarvrd 753 ident Sbjct ------------------------------------------------------------ 382 DSSP ------------------------------------------------------------ DSSP hhhhhleellllllllhhhhhhhhhllllll Query iehltgldfyrktsrsyseiltlktylhtye 784 ident Sbjct ------------------------------- 382 DSSP -------------------------------