Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1tuf-A 37.8  3.0  412   434   24 PDB  MOLECULE: DIAMINOPIMELATE DECARBOXYLASE;                             


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=1tufA Z-score=37.8

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DSSP  llllllLLLLHhHEEELLLLEEELlllLLLHHHHHHHHhhlllLLLEEEELHHHHHHHHH
Query xxdygiDIWGNeNFIIKNGKVCINyekKPAIIDIVKELrddgyKGPLLLRFPHLIQKQIE   60
ident                || |   |        |             ||       |     
Sbjct ------FLGND-TVEIKDGRFFID---GYDAIELAEKF-----GTPLYVMSEEQIKINYN   45
DSSP  ------LLLLL-LEEELLLLEEEL---LEEHHHHHHHH-----LLLEEEEEHHHHHHHHH


DSSP  HHHHHHHhHHHHlLLLLLEEEEEEHHHLLLHHHHHHHHHHLhhhlLEEEELLHHHHHHHH
Query NIYGNFNkARKEfGYKGGFNAVYPLKVNQYPGFVKNLVKLGkdynYGLEAGSKAELLLAX  120
ident      |     |      |   |    |        | |||     |    |  ||  | 
Sbjct RYIEAFK-RWEE-ETGKEFIVAYAYXANANLAITRLLAKLG----CGADVVSGGELYIAK   99
DSSP  HHHHHHL-LHHH-HLLLLEEEEEEHHHLLLHHHHHHHHHLL----LEEEELLHHHHHHHH


DSSP  H-HLLLlLEEEELL-LLLHHHHHHHHHHHhlllEEEEEELLHHHHHHHHHHHLLLLlLLL
Query A-YNNEgAPITVNG-FKDRELINIGFIAAexghNITLTIEGLNELEAIIDIAKERFkPKP  178
ident          |  ||  |  | |  |  |               ||  |   |||      
Sbjct LsNVPS-KKIVFNGnCKTKEEIIMGIEAN----IRAFNVDSISELILINETAKELG-ETA  153
DSSP  HlLLLH-HHEEELLlLLLHHHHHHHHHLL----LLEEEELLHHHHHHHHHHHHHHL-LLE


DSSP  EEEEELLLLL--------------lLLLLLH--HHHHHHHHHHHHLLlllLEEEEELLLL
Query NIGLRVRLHS--------------aKFGLTS--TELIEAVNLLKENKlleQFTXIHFHLG  222
ident |   |                    ||||         |     |          | | |
Sbjct NVAFRINPNVnpkthpkistglkknKFGLDVesGIAMKAIKMALEME-yvNVVGVHCHIG  212
DSSP  EEEELEELLLlllllhhhhhhhhhlLLLEELllLHHHHHHHHHHLLL-leEELEEELLLL


DSSP  LLLLLLHHHHHHHHHHHHHHHHHHHLLLLlLLEEEEELLLLLLLLLlllLLLLlLLHHHH
Query SQITEIHPLKKALNEAGNIYTELRKXGAKnLKAINLGGGLAVEYSQfknEKSRnYTLREY  282
ident || | | |             ||   |       ||||||   |      |    |    
Sbjct SQLTDISPFIEETRKVMDFVVELKEEGIE-IEDVNLGGGLGIPYYK---DKQI-PTQKDL  267
DSSP  LLLLLHHHHHHHHHHHHHHHHHHHLLLLL-LLEEELLLLLLLLLLL---LLLL-LLHHHH


DSSP  HHHHHHHHHHhHHHLlLLLLEEEELLLHHHHHHHEEEEEEEEEEELLLllhhhlllllll
Query ANDVVFILKNiAEQKkDLEPDIFIESGRFVAANHAVLIAPVLELFSQEyaenklilkkqn  342
ident |             |    |    | ||   |    |   |                   
Sbjct ADAIINTMLK-YKDK-VEMPNLILEPGRSLVATAGYLLGKVHHIKETP------------  313
DSSP  HHHHHHHHHL-LLLL-LLLLEEEELLLHHHHHHHEEEEEEEEEEEELL------------


DSSP  lhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhh
Query pklidelydlyksikpsnaleylhdsidhlesiltlfdlgyvdlqdrsnaeilthlitkk  402
ident                                                             
Sbjct ------------------------------------------------------------  313
DSSP  ------------------------------------------------------------


DSSP  hhhhllllLLEEEELLLLlLLLHHHHHLLLLLLEEELLLlLLLLlLLLLLEELLLLLLLL
Query ailllgevQERYLVNFSLfQSXPDFWGLEQNFPIXPLDRlDEEPtRSASIWDITCDSDGE  462
ident                             |    |        |     ||    | |   
Sbjct -------vTKWVMIDAGM-NDMMRPAMYEAYHHIINCKV-KNEK-EVVSIAGGLCESSDV  363
DSSP  -------lLEEEEELLLL-LLLLHHHHHLLLLLEEELLL-LLLE-EEEEEELLLLLLLLE


DSSP  LLLllllLLLLLLLLLlllLLEEEELLLLLLLLLLLLLLLLLLLLEEEEEEELllleEEE
Query ISYskdkPLFLHDVDVekeNYFLGFFLVGAYQEVLGXKHNLFTHPTEAIISINekgyEVE  522
ident           |  | |      |  | ||||        |    |     |       | 
Sbjct FGR----DRELDKVEV---GDVLAIFDVGAYGISMANNYNARGRPRMVLTSKK----GVF  412
DSSP  EEE----EEEEELLLL---LLEEEELLLLLLLHHHLLLLLLLLLLEEEEEELL----EEE


DSSP  EEELLLLHHHHHhHLLLlhhhHHHHHHhhhhllllllhhhhhhhhhhhhhhhllllllll
Query GIIEAQSILDTLeDLDYdihaIXDILNerisnsklvndkqkkhilgelylflndngylks  582
ident  | |     |     |         |                                  
Sbjct LIRERETYADLI-AKDI----VPPHLL---------------------------------  434
DSSP  EEELLLLHHHHL-LLLL----LLHHHL---------------------------------


DSSP  l
Query i  583
ident  
Sbjct -  434
DSSP  -