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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
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is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1tuf-A 37.8 3.0 412 434 24 PDB MOLECULE: DIAMINOPIMELATE DECARBOXYLASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1tufA Z-score=37.8
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DSSP llllllLLLLHhHEEELLLLEEELlllLLLHHHHHHHHhhlllLLLEEEELHHHHHHHHH Query xxdygiDIWGNeNFIIKNGKVCINyekKPAIIDIVKELrddgyKGPLLLRFPHLIQKQIE 60 ident || | | | || | Sbjct ------FLGND-TVEIKDGRFFID---GYDAIELAEKF-----GTPLYVMSEEQIKINYN 45 DSSP ------LLLLL-LEEELLLLEEEL---LEEHHHHHHHH-----LLLEEEEEHHHHHHHHH DSSP HHHHHHHhHHHHlLLLLLEEEEEEHHHLLLHHHHHHHHHHLhhhlLEEEELLHHHHHHHH Query NIYGNFNkARKEfGYKGGFNAVYPLKVNQYPGFVKNLVKLGkdynYGLEAGSKAELLLAX 120 ident | | | | | | ||| | | || | Sbjct RYIEAFK-RWEE-ETGKEFIVAYAYXANANLAITRLLAKLG----CGADVVSGGELYIAK 99 DSSP HHHHHHL-LHHH-HLLLLEEEEEEHHHLLLHHHHHHHHHLL----LEEEELLHHHHHHHH DSSP H-HLLLlLEEEELL-LLLHHHHHHHHHHHhlllEEEEEELLHHHHHHHHHHHLLLLlLLL Query A-YNNEgAPITVNG-FKDRELINIGFIAAexghNITLTIEGLNELEAIIDIAKERFkPKP 178 ident | || | | | | | || | ||| Sbjct LsNVPS-KKIVFNGnCKTKEEIIMGIEAN----IRAFNVDSISELILINETAKELG-ETA 153 DSSP HlLLLH-HHEEELLlLLLHHHHHHHHHLL----LLEEEELLHHHHHHHHHHHHHHL-LLE DSSP EEEEELLLLL--------------lLLLLLH--HHHHHHHHHHHHLLlllLEEEEELLLL Query NIGLRVRLHS--------------aKFGLTS--TELIEAVNLLKENKlleQFTXIHFHLG 222 ident | | |||| | | | | | Sbjct NVAFRINPNVnpkthpkistglkknKFGLDVesGIAMKAIKMALEME-yvNVVGVHCHIG 212 DSSP EEEELEELLLlllllhhhhhhhhhlLLLEELllLHHHHHHHHHHLLL-leEELEEELLLL DSSP LLLLLLHHHHHHHHHHHHHHHHHHHLLLLlLLEEEEELLLLLLLLLlllLLLLlLLHHHH Query SQITEIHPLKKALNEAGNIYTELRKXGAKnLKAINLGGGLAVEYSQfknEKSRnYTLREY 282 ident || | | | || | |||||| | | | Sbjct SQLTDISPFIEETRKVMDFVVELKEEGIE-IEDVNLGGGLGIPYYK---DKQI-PTQKDL 267 DSSP LLLLLHHHHHHHHHHHHHHHHHHHLLLLL-LLEEELLLLLLLLLLL---LLLL-LLHHHH DSSP HHHHHHHHHHhHHHLlLLLLEEEELLLHHHHHHHEEEEEEEEEEELLLllhhhlllllll Query ANDVVFILKNiAEQKkDLEPDIFIESGRFVAANHAVLIAPVLELFSQEyaenklilkkqn 342 ident | | | | || | | | Sbjct ADAIINTMLK-YKDK-VEMPNLILEPGRSLVATAGYLLGKVHHIKETP------------ 313 DSSP HHHHHHHHHL-LLLL-LLLLEEEELLLHHHHHHHEEEEEEEEEEEELL------------ DSSP lhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhh Query pklidelydlyksikpsnaleylhdsidhlesiltlfdlgyvdlqdrsnaeilthlitkk 402 ident Sbjct ------------------------------------------------------------ 313 DSSP ------------------------------------------------------------ DSSP hhhhllllLLEEEELLLLlLLLHHHHHLLLLLLEEELLLlLLLLlLLLLLEELLLLLLLL Query ailllgevQERYLVNFSLfQSXPDFWGLEQNFPIXPLDRlDEEPtRSASIWDITCDSDGE 462 ident | | | || | | Sbjct -------vTKWVMIDAGM-NDMMRPAMYEAYHHIINCKV-KNEK-EVVSIAGGLCESSDV 363 DSSP -------lLEEEEELLLL-LLLLHHHHHLLLLLEEELLL-LLLE-EEEEEELLLLLLLLE DSSP LLLllllLLLLLLLLLlllLLEEEELLLLLLLLLLLLLLLLLLLLEEEEEEELllleEEE Query ISYskdkPLFLHDVDVekeNYFLGFFLVGAYQEVLGXKHNLFTHPTEAIISINekgyEVE 522 ident | | | | | |||| | | | | Sbjct FGR----DRELDKVEV---GDVLAIFDVGAYGISMANNYNARGRPRMVLTSKK----GVF 412 DSSP EEE----EEEEELLLL---LLEEEELLLLLLLHHHLLLLLLLLLLEEEEEELL----EEE DSSP EEELLLLHHHHHhHLLLlhhhHHHHHHhhhhllllllhhhhhhhhhhhhhhhllllllll Query GIIEAQSILDTLeDLDYdihaIXDILNerisnsklvndkqkkhilgelylflndngylks 582 ident | | | | | Sbjct LIRERETYADLI-AKDI----VPPHLL--------------------------------- 434 DSSP EEELLLLHHHHL-LLLL----LLHHHL--------------------------------- DSSP l Query i 583 ident Sbjct - 434 DSSP -