Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
No: Chain Z rmsd lali nres %id PDB Description
1: 2kpm-A 7.0 3.7 81 105 33 PDB MOLECULE: UNCHARACTERIZED PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2kpmA Z-score=7.0
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DSSP -------------llllllLLHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHLLLLLLL- Query -------------mphkekHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPR- 46 ident | | | ||| | | || | | || | Sbjct mdqkssspqpaaqapetkqAFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRl 60 DSSP lllllllllllllllllllLLLHHHHHHHHHHLLLLLLLEEHHHHHHHHHHHLLLLLHHh DSSP -LLLLlhHHHHHHLL-LLEEEEEEEE--LLEEEEEEEELLLllLLLLLLl Query -NWGHgrLSQMVKKL-DFLTVQESRN--GSKLHSEIRLRHDglEHHHHHh 92 ident || || | | | ||||| Sbjct yGYKK--LSDLVKARtDLFVTEERQVpgSTQKALYLRAKLE--HHHHHH- 105 DSSP lLLLL--HHHHHHHLlLLEEEEEEELllLLLEEEEEEELLL--LLLLLL-