Results

Parseable data
Matches to PDB90
Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2kpm-A  7.0  3.7   81   105   33 PDB  MOLECULE: UNCHARACTERIZED PROTEIN;                                   


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2kpmA Z-score=7.0

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DSSP  -------------llllllLLHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHLLLLLLL-
Query -------------mphkekHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPR-   46
ident                             | |    | ||| |   | || |  | || | 
Sbjct mdqkssspqpaaqapetkqAFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRl   60
DSSP  lllllllllllllllllllLLLHHHHHHHHHHLLLLLLLEEHHHHHHHHHHHLLLLLHHh


DSSP  -LLLLlhHHHHHHLL-LLEEEEEEEE--LLEEEEEEEELLLllLLLLLLl
Query -NWGHgrLSQMVKKL-DFLTVQESRN--GSKLHSEIRLRHDglEHHHHHh   92
ident        ||  ||   |     |             |       ||||| 
Sbjct yGYKK--LSDLVKARtDLFVTEERQVpgSTQKALYLRAKLE--HHHHHH-  105
DSSP  lLLLL--HHHHHHHLlLLEEEEEEELllLLLEEEEEEELLL--LLLLLL-