Results

Parseable data
Matches to PDB90
Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

Expand gaps

Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2ju1-A  3.1  3.5   68    95    7 PDB  MOLECULE: ERYTHRONOLIDE SYNTHASE;                                    
   2:  1kfu-L  3.0  3.5   83   699    7 PDB  MOLECULE: M-CALPAIN LARGE SUBUNIT;                                   
   3:  1kfu-S  2.7  4.4   88   184   15 PDB  MOLECULE: M-CALPAIN LARGE SUBUNIT;                                   
   4:  1kfx-L  2.6  3.4   81   640    7 PDB  MOLECULE: M-CALPAIN LARGE SUBUNIT;                                   
   5:  2i7a-A  2.6  5.6   80   157   16 PDB  MOLECULE: CALPAIN 13;                                                
   6:  2ccm-A  2.5  4.2   96   190    6 PDB  MOLECULE: CALEXCITIN;                                                
   7:  3dwc-B  2.5  4.7   89   506    8 PDB  MOLECULE: METALLOCARBOXYPEPTIDASE;                                   
   8:  2hl7-A  2.5  2.5   54    82   11 PDB  MOLECULE: CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH;                 
   9:  2sas-A  2.5  3.7   91   185    4 PDB  MOLECULE: SARCOPLASMIC CALCIUM-BINDING PROTEIN;                      
  10:  1n5u-A  2.4  3.5   82   583    9 PDB  MOLECULE: SERUM ALBUMIN;                                             
  11:  2hiv-A  2.3  3.2   61   577    8 PDB  MOLECULE: THERMOSTABLE DNA LIGASE;                                   
  12:  3fwb-A  2.2  2.9   63   153   11 PDB  MOLECULE: CELL DIVISION CONTROL PROTEIN 31;                          
  13:  3glf-G  2.1  6.0   74   378    8 PDB  MOLECULE: DNA POLYMERASE III SUBUNIT DELTA;                          
  14:  1sxj-C  2.0  3.2   65   322   11 PDB  MOLECULE: ACTIVATOR 1 95 KDA SUBUNIT;                                


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2ju1A Z-score=3.1

back to top
DSSP  lllllllllllllllllllllhhHHHHHHHHHHhhhlllllllllllhhhhhhhhhhhll
Query pqsyfnaaakrqkyamkpglsalEKNAVIKAAYrqiferditkaysqsisylesqvrngd   60
ident                                                             
Sbjct -----------------------GSHMLRDRLA---------------------------   10
DSSP  -----------------------LLLLHHHHHL---------------------------


DSSP  llHHHHHHHHHLLhhHHHHLLLLL-----------------------LHHHHHHHHHHHH
Query isMKEFVRRLAKSplYRKQFFEPF-----------------------INSRALELAFRHI   97
ident                                                   |   |     
Sbjct glPRAERTAELVR--LVRTSTATVlghddpkavrattpfkelgfdslAAVRLRNLLNAAT   68
DSSP  llLHHHHHHHHHH--HHHHHHHHHlllllhhhllllllhhhhllllhHHHHHHHHHHHHL


DSSP  lLLLLllhhhHHHHHHHHhhLLHHHHHHHHHLLhhhhhllllllllllllllllllll
Query lGRGPssreeVQKYFSIVssGGLPALVDALVDSqeyadyfgeetvpylrglehhhhhh  155
ident  |                      |    |                            
Sbjct -GLRL-----PSTLVFDH--PNASAVAGFLDAE-----------------------lg   95
DSSP  -LLLL-----LLLHHHHL--LLHHHHHHHHHHH-----------------------hl


No 2: Query=mol1A Sbjct=1kfuL Z-score=3.0

back to top
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct agiaaklakdreaaeglgsheraikylnqdyealrnecleagtlfqdpsfpaipsalgfk   60
DSSP  llhhhhhhhhhhhhhlllllllleehhhllhhhhhhhhhhhlllllllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct elgpyssktrgmrwkrpteicadpqfiiggatrtdicqgalgdcwllaaiasltlneeil  120
DSSP  llllllllllleeeelhhhhllllllllllllllleellllllhhhhhhhhhllllhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct arvvplnqsfqenyagifhfqfwqygewvevvvddrlptkdgellfvhsaegsefwsall  180
DSSP  lllllllllllllllleeeeeeelllleeeeeeelleeeelleellleellllllhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct ekayakingcyealsggattegfedftggiaewyelkkpppnlfkiiqkalqkgsllgcs  240
DSSP  hhhhhhllllhhhlllllhhhhhhhlllleeeeeelllllllhhhhhhhhhlllleeeee


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct iditsaadseaitfqklvkghaysvtgaeevesngslqklirirnpwgevewtgrwndnc  300
DSSP  lllllllllllllllllllllleeeeeeeeelllllleeeeeeellllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct pswntidpeererltrrhedgefwmsfsdflrhysrleicnltpdtltsdtykkwkltkm  360
DSSP  llllllllhhhhllllllllllllllhhhhhllleeeeeellhhhlllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct dgnwrrgstaggcrnypntfwmnpqylikleeededeedgesgctflvgliqkhrrrqrk  420
DSSP  leeelllllllllllllllhhhlllleeellllllllllllllleeeeeeeellllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct mgedmhtigfgiyevpeelsgqtnihlsknffltnrarersdtfinlrevlnrfklppge  480
DSSP  llllllleeeeeeellllllllllllllhhhhhhlllllllllllllleelleeelllle


DSSP  ---------------------------lllllllllllllLLLLLlllhHHHH-------
Query ---------------------------pqsyfnaaakrqkYAMKPglsaLEKN-------   26
ident                                                             
Sbjct yilvpstfepnkdgdfcirvfsekkadyqavddeieanleEFDIS---eDDIDdgvrrlf  537
DSSP  eeeeeeelllllleeeeeeeeellllleelllllllllllLLLLL---lLLLLlhhhhhh


DSSP  -----------------------hhhhhhhhhhlllllllllllhhhhhhhhhhHLLLL-
Query -----------------------avikaayrqiferditkaysqsisylesqvrNGDIS-   62
ident                                                             
Sbjct aqlagedaeisafelqtilrrvlakrqdiksdgfsietckimvdmldsdgsgklGLKEFy  597
DSSP  hhhlllllleehhhhhhhhhhhlllllllllllllhhhhhhhhhlllllllleeLLHHHh


DSSP  HHHHHHHHHLLhhHHHHLLLL----lLHHHhHHHHHHHHlLLLLlLHHHHHHHHHHHHH-
Query MKEFVRRLAKSplYRKQFFEP----fINSRaLELAFRHIlGRGPsSREEVQKYFSIVSS-  117
ident                                   |     |         |         
Sbjct ILWTKIQKYQK--IYREIDVDrsgtmNSYE-MRKALEEA-GFKM-PCQLHQVIVARFADd  652
DSSP  HHHHHHHHHHH--HHHLLLLLlllleELLL-HHHHLLLL-LLLL-LHHHHHHHHHHHLLl


DSSP  ---LLHHHHHHHHHL-LHHHHHLL-----llllllllllllllllll
Query ---GGLPALVDALVD-SQEYADYF-----geetvpylrglehhhhhh  155
ident          |  ||                                 
Sbjct qliIDFDNFVRCLVRlETLFKIFKqldpentgtieldliswlcfsvl  699
DSSP  lleELHHHHHHHHHHhHHHHHHHHhhllllllleeeehhhhhhhhll


No 3: Query=mol1A Sbjct=1kfuS Z-score=2.7

back to top
DSSP  lllllllllllllllllLLLLHHhhhhhhhhhhhhhlllllllllllhhHHHHHHHHH--
Query pqsyfnaaakrqkyamkPGLSALeknavikaayrqiferditkaysqsiSYLESQVRN--   58
ident                                                  |    | |   
Sbjct ---------------thYSNIEA------------------------neSEEVRQFRRlf   21
DSSP  ---------------llLLLLLL------------------------llLHHHHHHHHhh


DSSP  -------------------------------------------------------LLLL-
Query -------------------------------------------------------GDIS-   62
ident                                                             
Sbjct aqlagddmevsatelmnilnkvvtrhpdlktdgfgidtcrsmvavmdsdttgklgFEEFk   81
DSSP  hhhllllllllhhhhhhhhllllllllllllllllhhhhhhhhhhhlllllllllLHHHh


DSSP  HHHHHHHHHLLhhHHHHLLLL----lLHHHHhHHHHHHHlLLLLLLhHHHHHHHHHHHH-
Query MKEFVRRLAKSplYRKQFFEP----fINSRAlELAFRHIlGRGPSSrEEVQKYFSIVSS-  117
ident                |||          |     ||    |                |  
Sbjct YLWNNIKRWQA--IYKQFDTDrsgtiCSSEL-PGAFEAA-GFHLNE-HLYNMIIRRYSDe  136
DSSP  HHHHHHHHHHH--HHHHLLLLlllllLHHHH-HHHHHHL-LLLLLH-HHHHHHHHHHLLl


DSSP  ---LLHHHHHHHHHL-LHHHHHLL------llllllllllllllllll
Query ---GGLPALVDALVD-SQEYADYF------geetvpylrglehhhhhh  155
ident             ||                                  
Sbjct sgnMDFDNFISCLVRlDAMFRAFKsldkdgtgqiqvniqewlqltmys  184
DSSP  lllLLHHHHHHHHHHhHHHHHHHHhhlllllleeeelhhhhhhhhhll


No 4: Query=mol1A Sbjct=1kfxL Z-score=2.6

back to top
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct agiaaklakdreaaeglgsheraikylnqdyealrnecleagtlfqdpsfpaipsalgfk   60
DSSP  lhhhhhhhhhhhhhhlllllllleehhhllhhhhhhhhhlllllllllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct elgpyssktrgmrwkrpteicadpqfiiggatrtdicqgalgdcwllaaiasltlneeil  120
DSSP  llllllhhhllleeellhhhllllllllllllllleeellllllhhhhhhhhhhlllllh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct arvvplnqsfqenyagifhfqfwqygewvevvvddrlptkdgellfvhsaegsefwsall  180
DSSP  hhhllllllllllllleeeeeeeelleeeeeeeelleeellllllleeellllllhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct ekayakingcyealsggattegfedftggiaewyelkkpppnlfkiiqkalqkgsllgcs  240
DSSP  hhhhhhhlllhhhlllllhhhhhhhhhlleeeeeelllllhhhhhhhhhhhhhlleeeel


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct idkghaysvtgaeevesngslqklirirnpwgevewtgrwmsfsdflrhysrleicnltp  300
DSSP  lllllleeellllllllllllllllleelllllllllllllllhhhhllleeeeeellll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct dtltsdtykkwkltkmdgnwrrgstaggcrnypntfwmnpqylikleeedectflvgliq  360
DSSP  llllllllllleeeeeeeeelllllllllllllllhhhllleeeeelllllleeeeeeel


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct khrrrqrkmgedmhtigfgiyevpeetnihlsknffltnrarersdtfinlrevlnrfkl  420
DSSP  llllllllllllllleeeeeeellllllllllhhhhhllllllllllllllllleeeeel


DSSP  -------------------------------llllllllllllllLLLLlllhhHHHH--
Query -------------------------------pqsyfnaaakrqkyAMKPglsalEKNA--   27
ident                                                             
Sbjct ppgeyilvpstfepnkdgdfcirvfsekkadyqavddeieanleeFDIS----eDDIDdg  476
DSSP  llleeeeeeeelllllleeeeeeeeellleeellllllleellllLLLL----lLLLLlh


DSSP  --------------------------hhhhhhhhhlllllllllllhhhhhhhhhhhLLL
Query --------------------------vikaayrqiferditkaysqsisylesqvrnGDI   61
ident                                                             
Sbjct vrrlfaqlagedaeisafelqtilrrvlakrksdgfsietckimvdmldsdgsgklgLKE  536
DSSP  hhhllhhhlllllleehhhhhhhhhllllllllllllhhhhhhhhhlllllllleelHHH


DSSP  L-HHHHHHHHHLLhhHHHHLLLL----lLHHHhHHHHHHHHlLLLLLLhHHHHHHHHHHH
Query S-MKEFVRRLAKSplYRKQFFEP----fINSRaLELAFRHIlGRGPSSrEEVQKYFSIVS  116
ident                                     |     |         |       
Sbjct FyILWTKIQKYQK--IYREIDVDrsgtmNSYE-MRKALEEA-GFKMPC-QLHQVIVARFA  591
DSSP  HhHHHHHHHHHHH--HHHHHLLLlllleELLH-HHHHHHHL-LEELLH-HHHHHHHHLLL


DSSP  H----LLHHHHHHHHHL-LHHHHHLL-----llllllllllllllllll
Query S----GGLPALVDALVD-SQEYADYF-----geetvpylrglehhhhhh  155
ident            |  ||                                 
Sbjct DdqliIDFDNFVRCLVRlETLFKIFKqldpentgtieldliswlcfsvl  640
DSSP  LllleELHHHHHHHHHHhHHHHHHHHhhllllllllleehhhhhhhhll


No 5: Query=mol1A Sbjct=2i7aA Z-score=2.6

back to top
DSSP  ------------------------llllllllllllllLLLLLLlhhhhhhhhhhhhhhh
Query ------------------------pqsyfnaaakrqkyAMKPGLsaleknavikaayrqi   36
ident                                         |                   
Sbjct sglvpgsdidatqlqgllnqelldmfsldecrslvalmELKVNG----------------   44
DSSP  lllllllleehhhhhhhhhhhhlllllhhhhhhhhhhhLLLLLL----------------


DSSP  lllllllllllhhhhhhhhhHHLL-LLHHHHHHHHHLLhhHHHHLLLL---lLHHHhHHH
Query ferditkaysqsisylesqvRNGD-ISMKEFVRRLAKSplYRKQFFEP---fINSRaLEL   92
ident                                                       |  |  
Sbjct -------------------rLDQEeFARLWKRLVHYQH--VFQKVQTSpgvlLSSD-LWK   82
DSSP  -------------------eELHHhHHHHHHHHHHHHH--HHHHHLLLllleEHHH-HHH


DSSP  HHH--HHLLlllLLHHHHHHHHHHHHH----LLHHHHHHHHHL-LHHHHHLL-----lll
Query AFR--HILGrgpSSREEVQKYFSIVSS----GGLPALVDALVD-SQEYADYF-----gee  140
ident |      |     |||         |        | ||  |                   
Sbjct AIEntDFLRgifISRELLHLVTLRYSDsvgrVSFPSLVCFLMRlEAMAKTFRnlskdgkg  142
DSSP  HHHllHHHLlllLLHHHHHHHHHHHLLllleELHHHHHHHHHHhHHHHHHHHhhllllll


DSSP  lllllllllllllll
Query tvpylrglehhhhhh  155
ident                
Sbjct lyltemewmslvmyn  157
DSSP  llllhhhhhhhhhll


No 6: Query=mol1A Sbjct=2ccmA Z-score=2.5

back to top
DSSP  ------lllllllllllLLLL--lllLLLHhhHHHHHHHHHHHhlLLLL-LLLL-LLHHH
Query ------pqsyfnaaakrQKYA--mkpGLSAleKNAVIKAAYRQifERDI-TKAY-SQSIS   50
ident                           |           |           |         
Sbjct aahqlsdfqrnkilrvfNTFYdcnhdGVIE--WDDFELAIKKIcnLHSWpTDGKkHNEAR   58
DSSP  llllllhhhhhhhhhhhHHHLlllllLEEL--HHHHHHHHHHHhhHHLLlLLLHhHHHHH


DSSP  HHHHHHHHLL----------------------------------lLHHHHHHHHHLLhhH
Query YLESQVRNGD----------------------------------iSMKEFVRRLAKSplY   76
ident         |                                                   
Sbjct ATLKLIWDGLrkyadenedeqvtkeewlkmwaecvksvekgeslpEWLTKYMNFMFD-vN  117
DSSP  HHHHHHHHHHhhhhllllllleehhhhhhhhhhhhhhhhllllllHHHHHHHHHHHH-hH


DSSP  HHHLLllllhhhHHHHHHHH------hllLLLLlhhhhHHHHHhhHHLLHHHHHHHHHLL
Query RKQFFepfinsrALELAFRH------ilgRGPSsreevQKYFSivSSGGLPALVDALVDS  130
ident                                                         |   
Sbjct DTSGD----niiDKHEYSTVymsygipksDCDA---afDTLSDggKTMVTREIFARLWTE  170
DSSP  LLLLL----lllLHHHHHHHhhlllllhhHHHH---hhHHHLLllLLLLLHHHHHHHHHH


DSSP  hhHHHLlllllllllllllllllll
Query qeYADYfgeetvpylrglehhhhhh  155
ident   |                      
Sbjct --YFVS---ndrgakgnhlfgtlkl  190
DSSP  --HHHL---lllllhhhhlllllll


No 7: Query=mol1A Sbjct=3dwcB Z-score=2.5

back to top
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct smkpykelervftklyryghmllladwdshtmmpxkgsdargaamaelqlhmhdtitapk   60
DSSP  lhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhhllhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct iralieeaeksvgdleklqranlremrrawelenllpeefverktvlttkahqvwktcre  120
DSSP  hhhhhhhhhhlhhhllhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct kndfagflptlkelialfreegklragnsgkhpyealvdiyepgmtlqrldeifgnvrsw  180
DSSP  hllhhhhhhhhhhhhhhhhhhhhhhhllllllhhhhhhhhhlllllhhhhhhhhhhhhhh


DSSP  ------lllllllllllllllllLLLLHHHHHHHHHHHHHHHLlllLLLLLllHHHH---
Query ------pqsyfnaaakrqkyamkPGLSALEKNAVIKAAYRQIFerdITKAYsqSISY---   51
ident                                 |                           
Sbjct lpellkevqekqkalgetvlepkGPFPVSKQEALCRFFMDVWK--fDFDGG--RLDVsah  236
DSSP  hhhhhhhhhhhhhhhllllllllLLLLHHHHHHHHHHHHHHLL--lLLLLE--EEEElll


DSSP  ------------HHHHhhhLLLL-HHHHHHHHHLLhhHHHHLLLL--------LLHHhhh
Query ------------LESQvrnGDIS-MKEFVRRLAKSplYRKQFFEP--------FINSral   90
ident                                         |   |               
Sbjct pfcgnskedvriTTKYtetEFVTsLLGVIHETGHA--KYEQNCGPkgfetqpvCMAR---  291
DSSP  lleeeelleeeeEELLlllLLHHhHHHHHHHHHHH--HHHHLLLLllllllllLLLL---


DSSP  hhhhhhhlllllllhhhhhhhhhhhHHLLHHHHHHHHHLLhhHHHLLLlllllllLLLL-
Query elafrhilgrgpssreevqkyfsivSSGGLPALVDALVDSqeYADYFGeetvpylRGLE-  149
ident                          | |                  |          |  
Sbjct -------------------------SLGVHEGQSLFAEMQigRSGAFM-------EFLAp  319
DSSP  -------------------------LHHHHHHHHHHHHLLllLLHHHH-------HHHHh


DSSP  ------------------llLLLL------------------------------------
Query ------------------hhHHHH------------------------------------  155
ident                                                             
Sbjct rlveyfgdqpaftssnmkrvIQRVspgliridadelcyplhvmlryeierdlmdgnieae  379
DSSP  hhhhhhlllllllhhhhhhhHLLLlllllhhhlllllhhhhhhhhhhhhhhhhhllllhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  155
ident                                                             
Sbjct evprvwnekmksylgletlgndkegclqdvhwsggmfgyfptyslgamvaaqlmscvrre  439
DSSP  hhhhhhhhhhhhhhllllllllllllllllllllllllllhhhhhhhhhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  155
ident                                                             
Sbjct lgeevvddcirkgdlgkilakqnekiwqhgsslttdellrqatgetlnpehyrrhlerry  499
DSSP  hlhhhhhhhhhllllhhhhhhhhhhlhhhlllllhhhhhhhhhllllllhhhhhhhhhhh


DSSP  -------
Query -------  155
ident        
Sbjct rddrgga  506
DSSP  lllllll


No 8: Query=mol1A Sbjct=2hl7A Z-score=2.5

back to top
DSSP  lllllllllllllllllllLLHHHHHHHHHHHHHHHL-------llLLLLL--LLLHHHH
Query pqsyfnaaakrqkyamkpgLSALEKNAVIKAAYRQIF-------erDITKA--YSQSISY   51
ident                                                   |         
Sbjct ---------gshmaidtyeFASDAERERFRNLTQELRcpkcqnqdiADSNApiAADLRKQ   51
DSSP  ---------llllhhhhllLLLHHHHHHHHHHHHHEElllllllllLLLLLhhHHHHHHH


DSSP  HHHHHHHLlLLHHHHHHHHHL--LHHHhhhllllllhhhhhhhhhhhhlllllllhhhhh
Query LESQVRNGdISMKEFVRRLAK--SPLYrkqffepfinsralelafrhilgrgpssreevq  109
ident    |   |  |  | |                                            
Sbjct IYGQLQQG-KSDGEIVDYMVAryGDFV---------------------------------   77
DSSP  HHHHHHHL-LLHHHHHHHHHHhhLLLL---------------------------------


DSSP  hhhhhhhhllhhhhhhhhhllhhhhhllllllllllllllllllll
Query kyfsivssgglpalvdalvdsqeyadyfgeetvpylrglehhhhhh  155
ident                                               
Sbjct -----------------------------------------rykpp   82
DSSP  -----------------------------------------eelll


No 9: Query=mol1A Sbjct=2sasA Z-score=2.5

back to top
DSSP  ------------llllllllllLLLLlllllllhhhHHHHHHHHHHhhlLLLL------l
Query ------------pqsyfnaaakRQKYamkpglsaleKNAVIKAAYRqifERDI------t   42
ident                                                             
Sbjct glndfqkqkikftfdffldmnhDGSI----------QDNDFEDMMT---RYKEvnkgsls   47
DSSP  lllhhhhhhhhhhhhhhlllllLLEE----------LHHHHHHHHH---HHHHhhhhhll


DSSP  LLLLLHHHHHHHHHHHLL----------------------------------lLHHHHHH
Query KAYSQSISYLESQVRNGD----------------------------------iSMKEFVR   68
ident  |   |                                                      
Sbjct DADYKSMQASLEDEWRDLkgradinkddvvsweeylamwektiatcksvadlpAWCQNRI  107
DSSP  HHHHHHHHHHHHHHHHHHhhhhllllllleehhhhhhhhhhhhhllllhhhllLLHHHHH


DSSP  HHHLLhhHHHHLLLlllHHHHHHHHHHHhLLLLLLlhhHHHHHHHHHH----HLLHHhhH
Query RLAKSplYRKQFFEpfiNSRALELAFRHiLGRGPSsreEVQKYFSIVS----SGGLPalV  124
ident                                        |                    
Sbjct PFLFK--GMDVSGDgivDLEEFQNYCKN-FQLQCA---DVPAVYNVITdggkVTFDLnrY  161
DSSP  HHHHH--HHLLLLLlllLHHHHHHHLLL-LLLLLL---LHHHHHHHHHllllLLLLHhhH


DSSP  HHHhllhhhhhllllllllllllllllllll
Query DALvdsqeyadyfgeetvpylrglehhhhhh  155
ident   |                            
Sbjct KEL-------yyrlltspaadagntlmgqkp  185
DSSP  HHH-------hhhhhhlllllhhhhhhllll


No 10: Query=mol1A Sbjct=1n5uA Z-score=2.4

back to top
DSSP  lllllllllllllllLLLLLLHHHHHHHHHHHHHHHLLLlLLLLL-LLHHHHHHHHHHHL
Query pqsyfnaaakrqkyaMKPGLSALEKNAVIKAAYRQIFERdITKAY-SQSISYLESQVRNG   59
ident                    |      |    |  |                         
Sbjct -------ahksevahRFKDLGEENFKALVLIAFAQYLQQ-CPFEDhVKLVNEVTEFAKTC   52
DSSP  -------llllhhhhHHHHHLHHHHHHHHHHHHHHHLLL-LLHHHhHHHHHHHHHHHHHH


DSSP  ---------lLLHHHHHHHHHLL-HHHHHHLLllllhhhhhhhhhhhhlllllllhhhhh
Query ---------dISMKEFVRRLAKS-PLYRKQFFepfinsralelafrhilgrgpssreevq  109
ident            |               |                                
Sbjct vadesaencdKSLHTLFGDKLCTvATLRETYG----------------------------   84
DSSP  hhllllllllLLHHHHHHHHHHLlLLHHHHHH----------------------------


DSSP  hhhhhhhhlLHHHH-hHHHHL--------------------------------lhhhhhl
Query kyfsivssgGLPAL-vDALVD--------------------------------sqeyady  136
ident             |                                               
Sbjct ------emaDCCAKqePERNEcflqhkddnpnlprlvrpevdvmctafhdneetflkkyl  138
DSSP  ------hhhHHHHLlhHHHHHhhhhlllllllllllllllhhhhhhhhhhlhhhhhhhhh


DSSP  lllllllLLLL-------------------------------------------------
Query fgeetvpYLRG-------------------------------------------------  147
ident                                                             
Sbjct yeiarrhPYFYapellffakrykaafteccqaadkaacllpkldelrdegkassakqrlk  198
DSSP  hhhhhhlLLLLhhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhhhhhh


DSSP  -------------------------------------------------LLLL-------
Query -------------------------------------------------LEHH-------  151
ident                                                             
Sbjct caslqkfgerafkawavarlsqrfpkaefaevsklvtdltkvhtecchgDLLEcaddrad  258
DSSP  hhhhhhhlhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhlLHHHhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  151
ident                                                             
Sbjct lakyicenqdsissklkeccekpllekshciaevendempadlpslaadfveskdvckny  318
DSSP  hhhhhhllhhhlllllhhhhlllhhhhhhhhhllllllllllllllhhhhlllllhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  151
ident                                                             
Sbjct aeakdvflgmflyeyarrhpdysvvlllrlaktyettlekccaaadphecyakvfdefkp  378
DSSP  hhlhhhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhhhlllllhhhhhllhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  151
ident                                                             
Sbjct lveepqnlikqncelfeqlgeykfqnallvrytkkvpqvstptlvevsrnlgkvgskcck  438
DSSP  hhhhhhhhhhhhhhhhhhhlhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  151
ident                                                             
Sbjct hpeakrmpcaedylsvvlnqlcvlhektpvsdrvtkccteslvnrrpcfsalevdetyvp  498
DSSP  llhhhhhhhhhhhhhhhhhhhhhhhllllllhhhhhhhhlllllhhhhhhllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  151
ident                                                             
Sbjct kefnaetftfhadictlsekerqikkqtalvelvkhkpkatkeqlkavmddfaafvekcc  558
DSSP  lllllhhhlllhhhhlllhhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhh


DSSP  ---------------------llll
Query ---------------------hhhh  155
ident                          
Sbjct kaddketcfaeegkklvaasqaalg  583
DSSP  llllllllllhhhhhhhhhhhhhll


No 11: Query=mol1A Sbjct=2hivA Z-score=2.3

back to top
DSSP  lllllllllllllllllllllhhhhhhhHHHHhhhhlllllllllllhhhhhhhhhhhll
Query pqsyfnaaakrqkyamkpglsaleknavIKAAyrqiferditkaysqsisylesqvrngd   60
ident                                                             
Sbjct ---------------------------mEFKV------iaeyfdklekissrlqltalla   27
DSSP  ---------------------------lLLHH------hhhhhhhhhhlllhhhhhhhhh


DSSP  llhhhhHHHHHLLhHHHHHL----------------------------------------
Query ismkefVRRLAKSpLYRKQF----------------------------------------   80
ident                                                             
Sbjct dllsksDKTIIDK-VVYIIQgklwpdflgypelgigekflikaisiatntdensvenlyk   86
DSSP  hhhhllLHHHHHH-HHHHLLlllllhhhllllllllhhhhhhhhhhhhlllhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   80
ident                                                             
Sbjct tigdlgevarrlkskqkesltvdevystlskvalttgegsrdlkirllagllkkadplea  146
DSSP  hhllhhhhhhhhhhlllllllhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhllhhhh


DSSP  -----------llLLLHHHHHHHHHHHHLlLLLLlhhHHHHHHHHHH-HLLHHHHHHHHH
Query -----------fePFINSRALELAFRHILgRGPSsreEVQKYFSIVS-SGGLPALVDALV  128
ident                     |          | |                 |       |
Sbjct kflvrfvegrlrvGIGDATVLDAMAIAFG-GGQS---ASEIIERAYNlRADLGNIAKIIV  202
DSSP  hhhhhhhhlllllLLLHHHHHHHHHHHHL-LLHH---HHHHHHHHHHhLLLHHHHHHHHH


DSSP  LL----------------------------------------------------------
Query DS----------------------------------------------------------  130
ident                                                             
Sbjct EKgiealktlkpqvgipirpmlaerlsnpeeilkkmggnaivdykydgeraqihkkedki  262
DSSP  HHlhhhhlllllllllllllleeeelllhhhhhhhlllleeeeeellleeeeeeeellee


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  130
ident                                                             
Sbjct fifsrrlenitsqypdvvdyvskyiegkefiiegeivaidpesgemrpfqelmhrkrksd  322
DSSP  eeelllllllhhhlhhhhhhhhhhllllleeeeeeeeelllllllllllhhhhhhhhlll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  130
ident                                                             
Sbjct iyeaikeypvnvflfdlmyyedvdyttkplearrkllesivkpndyvkiahhiqannved  382
DSSP  hhhhhhhlleeeeeeeeeeelleelllllhhhhhhhhhhhlllllleeelleeeellhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  130
ident                                                             
Sbjct lksffyraiseggegvmvkaigkdaiyqagargwlwiklkrdyqsemadtvdlvvvggfy  442
DSSP  hhhhhhhhhhlllleeeeelllllllllllleeeeeeeeelllllllleeeeeeeeeeee


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  130
ident                                                             
Sbjct gkgkrggkissllmaaynpktdsfesvckvasgfsdeqldelqkklmeikrdvkhprvns  502
DSSP  llhhhllleeeeeeeeeelllleeeeeeeelllllhhhhhhhhhhhhlleelllllleel


DSSP  --------------------------------------------------hhhhhlllll
Query --------------------------------------------------qeyadyfgee  140
ident                                                             
Sbjct kmepdiwvepvyvaeiigseitisplhtccqdvvekdaglsirfprfirwrddkspedat  562
DSSP  llllleeelllleeeeeeleeeeelllllllllllllleeeeelleeeeelllllhhhll


DSSP  lllllllllllllll
Query tvpylrglehhhhhh  155
ident                
Sbjct ttdeilemynkqpkk  577
DSSP  lhhhhhhhhhhllll


No 12: Query=mol1A Sbjct=3fwbA Z-score=2.2

back to top
DSSP  lllllllllllllllllllllhhhhhhhhhhhhhhhlllllllllllhhhhhhhhhhhll
Query pqsyfnaaakrqkyamkpglsaleknavikaayrqiferditkaysqsisylesqvrngd   60
ident                                                             
Sbjct ---------------------------------------------------qsgplnsel    9
DSSP  ---------------------------------------------------lllllllll


DSSP  LLHHHHHHHHHLLhhHHHHllllllHHHHHHHHHHHHlLLLLLLHhHHHHHHH----hhh
Query ISMKEFVRRLAKSplYRKQffepfiNSRALELAFRHIlGRGPSSReEVQKYFS----ivs  116
ident           | |                |  |     |     | |             
Sbjct LEEQKQEIYEAFS-lFDMN-ndgflDYHELKVAMKAL-GFELPKR-EILDLIDeydsegr   65
DSSP  LHHHHHHHHHHHH-hHLLL-llleeLHHHHHHHHHHL-LLLLLHH-HHHHHHHhhlllll


DSSP  HLLHHHHHHHHHLLhhHHHLLL--------------------------------------
Query SGGLPALVDALVDSqeYADYFG--------------------------------------  138
ident                                                             
Sbjct HLMKYDDFYIVMGE-kILKRDPldeikrafqlfdddhtgkisiknlrrvakelgetltde  124
DSSP  LLEEHHHHHHHHHH-hHHLLLHhhhhhhhhhhhlllllleelhhhhhhhhhhllllllhh


DSSP  ------------lllllllllllllllll
Query ------------eetvpylrglehhhhhh  155
ident                              
Sbjct elramieefdldgdgeinenefiaictds  153
DSSP  hhhhhhhllllllllleehhhhhhhhhhl


No 13: Query=mol1A Sbjct=3glfG Z-score=2.1

back to top
DSSP  llllllLLLL-LLLLLllllllhhhhhhhhhhhhhhhlllllllllllhhhhhhhhhhhl
Query pqsyfnAAAK-RQKYAmkpglsaleknavikaayrqiferditkaysqsisylesqvrng   59
ident                                                             
Sbjct -----gLEVLfQGPHM--------------------------------------------   11
DSSP  -----lHHHHhLLLLL--------------------------------------------


DSSP  llLHHHhHHHHhLLHH-hhHHLLLL-----------------------------------
Query diSMKEfVRRLaKSPL-yrKQFFEP-----------------------------------   83
ident   |      |    |                                             
Sbjct --SYQV-LARK-WRPQtfaDVVGQEhvltalanglslgrihhaylfsgtrgvgktsiarl   67
DSSP  --LLLL-HHHH-LLLLlllLLLLLHhhhhhhhhhhhlllllleeeeellllllhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   83
ident                                                             
Sbjct lakglncetgitatpcgvcdncreieqgrfvdlieidaasrtkvedtrdlldnvqyapar  127
DSSP  hhhhlllllllllllllllhhhhhhhhllllleeeeellllllhhhhhhhhhhlllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   83
ident                                                             
Sbjct grfkvylidevhmlsrhsfnallktleeppehvkfllattdpqklpvtilsrclqfhlka  187
DSSP  llleeeeeelhhhllhhhhhhhhhhhhllllleeeeeelllhhhllhhhhllleeeelll


DSSP  lLHHHHHHHHHHHHLL-lllLLHHHHHHHHHHHhHLLHHHHHHHHHLL-HHHHH------
Query fINSRALELAFRHILG-rgpSSREEVQKYFSIVsSGGLPALVDALVDS-QEYAD------  135
ident                           |        | |                      
Sbjct lDVEQIRHQLEHILNEehiaHEPRALQLLARAA-EGSLRDALSLTDQAiASGDGqvstqa  246
DSSP  lLHHHHHHHHHHHHHHllllLLHHHHHHHHHHL-LLLHHHHHHHHHHHhHHLLLlllhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  135
ident                                                             
Sbjct vsamlgtldddqalslveamveangervmalineaaargieweallvemlgllhriamvq  306
DSSP  hhhhhhhllllhhhhhhhhhhlllhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhhll


DSSP  ----------------------------------------------------llllllll
Query ----------------------------------------------------yfgeetvp  143
ident                                                             
Sbjct lspaalgndmaaielrmrelartipptdiqlyyqtlligrkelpyapdrrmgvemtllra  366
DSSP  llhhhlllllhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhllllllhhhhhhhhhhhh


DSSP  llllllllllll
Query ylrglehhhhhh  155
ident             
Sbjct lafhprmplpep  378
DSSP  hhllllllllll


No 14: Query=mol1A Sbjct=1sxjC Z-score=2.0

back to top
DSSP  lllllllllllllllllllllhhhhhhhhhhhhhhhlllllllllllhhhhhhhhhhhll
Query pqsyfnaaakrqkyamkpglsaleknavikaayrqiferditkaysqsisylesqvrngd   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  llhhHHHHHHhLLHH-hhHHLLLL------------------------------------
Query ismkEFVRRLaKSPL-yrKQFFEP------------------------------------   83
ident              |                                              
Sbjct ---nLPWVEK-YRPEtldEVYGQNevittvrkfvdegklphllfygppgtgktstivala   56
DSSP  ---lLLHHHH-LLLLlhhHLLLLHhhhhhhhhhhhlllllleeeellllllhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   83
ident                                                             
Sbjct reiygknysnmvlelnasddrgidvvrnqikdfastrqifskgfkliildeadamtnaaq  116
DSSP  hhhhlllhhhheeeelllllllhhhhhlhhhhhhhllllllllleeeeellhhhllhhhh


DSSP  ----------------------------------------lLHHHHHHHHHHHHLL--ll
Query ----------------------------------------fINSRALELAFRHILG--rg  101
ident                                              | |      |     
Sbjct nalrrvierytkntrfcvlanyahkltpallsqctrfrfqpLPQEAIERRIANVLVhekl  176
DSSP  hhhhhhhhhlllleeeeeeellhhhllhhhhllleeeelllLLHHHHHHHHHHHHHllll


DSSP  lLLHHHHHHHHHHHHHlLHHHHHHHHHL-LHHHhHLLL----------------------
Query pSSREEVQKYFSIVSSgGLPALVDALVD-SQEYaDYFG----------------------  138
ident   |                      |        |                         
Sbjct kLSPNAEKALIELSNG-DMRRVLNVLQScKATL-DNPDedeisddviyeccgaprpsdlk  234
DSSP  lLLHHHHHHHHHHHLL-LHHHHHHHLLLlLLLL-LLLLlllllhhhhhhhlllllhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  138
ident                                                             
Sbjct avlksileddwgtahytlnkvrsakglalidliegivkiledyelqneetrvhlltklad  294
DSSP  hhhhhhhlllhhhhhhhhhhhhhlllllhhhhhhhhhhhhlllllllhhhhhhhhhhhhh


DSSP  -----------lllllllllllllllll
Query -----------eetvpylrglehhhhhh  155
ident                             
Sbjct ieysiskggndqiqgsavigaikasfen  322
DSSP  hhhhhlllllhhhhhhhhhhhhhhhlll