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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3h41-A 27.7 2.3 252 307 28 PDB MOLECULE: NLP/P60 FAMILY PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3h41A Z-score=27.7
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DSSP lllllllhhhLEEEELLLEEEEELLLLLL------------------------------- Query qeirpxpadsAYGVVHISVCNLREEGKFT------------------------------- 29 ident | | Sbjct ----------SKAFIDVSAATLWTAPDSLrpidvpsatnpvdlwkwtksxtldeklwltn 50 DSSP ----------LEEEELLLEEEEELLLLLLlhhhhhhhlllllhhhhhhhllhhhhhhhhh DSSP -LLEEEEEELLLEEEEEEEL-LEEEEELLL--------LLEEEEEHHHEEEelhHHHHHH Query -SGXSTQALLGXPVKVLQYN-GWYEIQTPD--------DYTGWVHRXVITPxskERYDEW 79 ident |||||| | | | | || | Sbjct aNKLETQALLGQEVTVVDKKgDWVKVLVHGqptprneeGYPGWXPEKQLTY--nQEFADK 108 DSSP lLLEEEEEELLLEEEEEEEElLEEEEEELLllllllllLEEEEEEHHHEEL--lHHHHHL DSSP HHLLEEEELLLEEEEELLlllllLEEEEEELLLEEEEEEEELLEEEEELLLLLEEEEELL Query NRAEKIVVTSHYGFAYEKpdessQPVSDVVAGNRLKWEGSKGHFYQVSYPDGRKAYLSKS 139 ident || | | || | | | | || | | Sbjct TNEPFVLVTKPTAILYIN-psekHKSLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKN 167 DSSP LLLLEEEELLLEEEEEEL-llllLLEEEEELLLEEEEEEELLLEEEEELLLLLEEEEEHH DSSP LEEEHHHhHHHLLLLHHHHHHHHHLLLLLLLLLLLEELLEEL-LHHHHHHHHLLLEELLL Query ISQPEAGwRASLKQDVESIIETAYSXXGIPYLWAGTSSKGVD-SGLVRTVLFXHDIIIPR 198 ident | | | || ||||| | | || | | | ||| Sbjct DGTFYRSqNDIPTPAADDLINTGKXFLGLPYIWAGTSGFGFDxSGFTHTIYKSHGITIPR 227 DSSP HEEEELLhHHLLLLLHHHHHHHHHLLLLLLLLLLLEELLEELhHHHHHHHHHLLLLLLLL DSSP LHHHHLLLLEEELLLllllLLLLLLEEEEEELlllllLLEEEEEEEEEELLEEEEEL--- Query DASQQAYVGEHIDIApdfsNVKRGDLVFFGRKataerKEGISHVGIYLGNKQFIHAL--- 255 ident | | | | ||| || | || | | || Sbjct DSGPQSRNGVAVDKE----HLQKGDLIFFAHD---qgKGSVHHVAXYIGDGNXIHSPrae 280 DSSP LHHHHLLLLEEELHH----HLLLLLEEEEEHH---hhLLLEEEEEEEEELLEEEELLlll DSSP LLEEEEELllllllLLHHHHLLEEEEEELHHhllllllleellllllll Query GDVHVSSXnpadqnYDEFNTKRLLFAVRFLPyinkekgxnttnknpfyq 304 ident | | | || Sbjct RSVEIIPL------NTPGYIEEYAGARRYLP----------------ax 307 DSSP LLLEEEEL------LLLLHHHHEEEEEELLL----------------ll