Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  3h41-A 27.7  2.3  252   307   28 PDB  MOLECULE: NLP/P60 FAMILY PROTEIN;

Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=3h41A Z-score=27.7

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DSSP  lllllllhhhLEEEELLLEEEEELLLLLL-------------------------------
Query qeirpxpadsAYGVVHISVCNLREEGKFT-------------------------------   29
ident                  |   |                                      
Sbjct ----------SKAFIDVSAATLWTAPDSLrpidvpsatnpvdlwkwtksxtldeklwltn   50
DSSP  ----------LEEEELLLEEEEELLLLLLlhhhhhhhlllllhhhhhhhllhhhhhhhhh


DSSP  -LLEEEEEELLLEEEEEEEL-LEEEEELLL--------LLEEEEEHHHEEEelhHHHHHH
Query -SGXSTQALLGXPVKVLQYN-GWYEIQTPD--------DYTGWVHRXVITPxskERYDEW   79
ident      ||||||  | |      |                | ||      |          
Sbjct aNKLETQALLGQEVTVVDKKgDWVKVLVHGqptprneeGYPGWXPEKQLTY--nQEFADK  108
DSSP  lLLEEEEEELLLEEEEEEEElLEEEEEELLllllllllLEEEEEEHHHEEL--lHHHHHL


DSSP  HHLLEEEELLLEEEEELLlllllLEEEEEELLLEEEEEEEELLEEEEELLLLLEEEEELL
Query NRAEKIVVTSHYGFAYEKpdessQPVSDVVAGNRLKWEGSKGHFYQVSYPDGRKAYLSKS  139
ident        ||      |            |    ||         | |  | | || | | 
Sbjct TNEPFVLVTKPTAILYIN-psekHKSLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKN  167
DSSP  LLLLEEEELLLEEEEEEL-llllLLEEEEELLLEEEEEEELLLEEEEELLLLLEEEEEHH


DSSP  LEEEHHHhHHHLLLLHHHHHHHHHLLLLLLLLLLLEELLEEL-LHHHHHHHHLLLEELLL
Query ISQPEAGwRASLKQDVESIIETAYSXXGIPYLWAGTSSKGVD-SGLVRTVLFXHDIIIPR  198
ident                    | |     | || |||||  | | ||   |    | | |||
Sbjct DGTFYRSqNDIPTPAADDLINTGKXFLGLPYIWAGTSGFGFDxSGFTHTIYKSHGITIPR  227
DSSP  HEEEELLhHHLLLLLHHHHHHHHHLLLLLLLLLLLEELLEELhHHHHHHHHHLLLLLLLL


DSSP  LHHHHLLLLEEELLLllllLLLLLLEEEEEELlllllLLEEEEEEEEEELLEEEEEL---
Query DASQQAYVGEHIDIApdfsNVKRGDLVFFGRKataerKEGISHVGIYLGNKQFIHAL---  255
ident |   |   |   |          ||| ||        |    ||  | |    ||     
Sbjct DSGPQSRNGVAVDKE----HLQKGDLIFFAHD---qgKGSVHHVAXYIGDGNXIHSPrae  280
DSSP  LHHHHLLLLEEELHH----HLLLLLEEEEEHH---hhLLLEEEEEEEEELLEEEELLlll


DSSP  LLEEEEELllllllLLHHHHLLEEEEEELHHhllllllleellllllll
Query GDVHVSSXnpadqnYDEFNTKRLLFAVRFLPyinkekgxnttnknpfyq  304
ident   |                      | | ||                  
Sbjct RSVEIIPL------NTPGYIEEYAGARRYLP----------------ax  307
DSSP  LLLEEEEL------LLLLHHHHEEEEEELLL----------------ll