Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2pz0-B 30.1  2.0  227   243   30 PDB  MOLECULE: GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE;               


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2pz0B Z-score=30.1

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DSSP  llLLLEEEELLLLLLLllLLLLLHHHHHHHHHLLLLEEEEEEEELLLLLEEELLLLEEL-
Query gkDNTKVIAHRGYWKTegSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQ-   59
ident     | ||||||  |      | |    || | || | | || || |  ||| ||     
Sbjct --MKTLVIAHRGDSKN--VPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDr   56
DSSP  --LLLEEEEELLLLLL--LLLLLHHHHHHHHHHLLLEEEEEEEELLLLLEEELLLLLLLl


DSSP  ----LEEHHHLLHHHHLLLLLLL-------LLLLLLHHHHHHHHHHlLLLEEEEEELLLL
Query ----GKHIQSCTYDELKDLQLSN-------GEKLPTLEQYLKRAKKlKNIRLIFELKSHD  108
ident            |  | | |           ||  |||          |      | ||  
Sbjct ttngEGFVKDFTLEEIKKLDAGIkfgekfaGERIPTLYEVFELIGD-KDFLVNIEIKSGI  115
DSSP  llllLLLHHHLLHHHHLLLLLLLlllhhhlLLLLLLHHHHHHHHLL-LLLEEEEEELLLL


DSSP  LhhHHHHHHHHHHHHHHHLLLHHHEEEEELLHHHHHHHHHHLLLLLEEELLLL---lLHH
Query TpeRNRDAARLSVQXVKRXKLAKRTDYISFNXDACKEFIRLCPKSEVSYLNGE---lSPX  165
ident                 |      |    |||           |      |          
Sbjct V--LYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCglvePWH  173
DSSP  L--LLLLHHHHHHHHHHHLLLLLLEEEEELLHHHHHHHHHHLLLLEEEEEELLllllLHH


DSSP  HHHHLLLLEEEEEHHHHHhlLLHHHHHHHLLLEEEEELLLLHHHHHHHHHHLLLEEEELL
Query ELKELGFTGLDYHYKVLQshPDWVKDCKVLGXTSNVWTVDDPKLXEEXIDXGVDFITTDL  225
ident          |   |      |  |  ||  |     ||||     |  |  ||| | || 
Sbjct MALRMEAYSLHPFYFNII--PELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIITDD  231
DSSP  HHHHLLLLEEEELHHHLL--HHHHHHHHLLLLEELLLLLLLHHHHHHHHHHLLLEEEELL


DSSP  HHHHHHHHHHHLl
Query PEETQKILHSRAq  238
ident ||           
Sbjct PETLINLVRKGG-  243
DSSP  HHHHHHHHLLLL-