Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2pz0-B 30.1 2.0 227 243 30 PDB MOLECULE: GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2pz0B Z-score=30.1
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DSSP llLLLEEEELLLLLLLllLLLLLHHHHHHHHHLLLLEEEEEEEELLLLLEEELLLLEEL- Query gkDNTKVIAHRGYWKTegSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQ- 59 ident | |||||| | | | || | || | | || || | ||| || Sbjct --MKTLVIAHRGDSKN--VPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDr 56 DSSP --LLLEEEEELLLLLL--LLLLLHHHHHHHHHHLLLEEEEEEEELLLLLEEELLLLLLLl DSSP ----LEEHHHLLHHHHLLLLLLL-------LLLLLLHHHHHHHHHHlLLLEEEEEELLLL Query ----GKHIQSCTYDELKDLQLSN-------GEKLPTLEQYLKRAKKlKNIRLIFELKSHD 108 ident | | | | || ||| | | || Sbjct ttngEGFVKDFTLEEIKKLDAGIkfgekfaGERIPTLYEVFELIGD-KDFLVNIEIKSGI 115 DSSP llllLLLHHHLLHHHHLLLLLLLlllhhhlLLLLLLHHHHHHHHLL-LLLEEEEEELLLL DSSP LhhHHHHHHHHHHHHHHHLLLHHHEEEEELLHHHHHHHHHHLLLLLEEELLLL---lLHH Query TpeRNRDAARLSVQXVKRXKLAKRTDYISFNXDACKEFIRLCPKSEVSYLNGE---lSPX 165 ident | | ||| | | Sbjct V--LYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCglvePWH 173 DSSP L--LLLLHHHHHHHHHHHLLLLLLEEEEELLHHHHHHHHHHLLLLEEEEEELLllllLHH DSSP HHHHLLLLEEEEEHHHHHhlLLHHHHHHHLLLEEEEELLLLHHHHHHHHHHLLLEEEELL Query ELKELGFTGLDYHYKVLQshPDWVKDCKVLGXTSNVWTVDDPKLXEEXIDXGVDFITTDL 225 ident | | | | || | |||| | | ||| | || Sbjct MALRMEAYSLHPFYFNII--PELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIITDD 231 DSSP HHHHLLLLEEEELHHHLL--HHHHHHHHLLLLEELLLLLLLHHHHHHHHHHLLLEEEELL DSSP HHHHHHHHHHHLl Query PEETQKILHSRAq 238 ident || Sbjct PETLINLVRKGG- 243 DSSP HHHHHHHHLLLL-