Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2kpu-A 5.9 3.5 85 96 14 PDB MOLECULE: YBBR FAMILY PROTEIN;
2: 1feu-D 5.2 3.9 77 189 16 PDB MOLECULE: 50S RIBOSOMAL PROTEIN L25;
3: 2kps-A 4.4 4.8 81 98 14 PDB MOLECULE: UNCHARACTERIZED PROTEIN;
4: 2kq1-A 4.0 3.3 71 119 18 PDB MOLECULE: BH0266 PROTEIN;
5: 2jov-A 2.6 6.0 60 85 8 PDB MOLECULE: HYPOTHETICAL PROTEIN CPE0013;
6: 1yl3-V 2.1 3.1 66 177 12 PDB MOLECULE: 5S RIBOSOMAL RNA;
7: 3a3j-A 2.1 4.6 67 344 7 PDB MOLECULE: PBP5;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2kpuA Z-score=5.9
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DSSP LLLLLLLEEELLEEEEEELLLLlleeEEEEEellLLLEEEElhhHHHHLLL--EEEEEEL Query KISLRKLSKSVPVKLELTGDKAsnvsSISYSfdrGHVTIVGsqeAMDKIDS--ITVPVDI 58 ident | | | | | | || Sbjct SSQTLDRDPTLTLSLIAKNTPA--nsMIMTKlpsVRVKTEG---YNPSINVneLFAYVDL 55 DSSP LLLLLLLLLEEEEEEEEELLLL--leEELLLlleEEEEEEL---LLLLLLLllLLEEEEL DSSP LLLLL-LEEEEEEL-LLLLEEEELLE-EEEEEEEEE-LLLLlllll Query SQVTE-DTSKTLEL-KAEGVTVQPST-VKVNLKVTQ-KLEHhhhhh 100 ident | | | | Sbjct SGSEPgEHDYEVKVePIPNIKIVEISpRVVTLQLEHhHHHH----- 96 DSSP LLLLLeEEEEELEElLLLLLEELLLLlLEEEEEEEElLLLL-----
DSSP -----------------------------LLLL--------------------------- Query -----------------------------KISL--------------------------- 4 ident | Sbjct meyrlkayyregekpsalrragklpglmyNRHLnrkvyvdlvefdkvfrqasihhvivle 60 DSSP leeeeeeeelllllhhhhhhlleeeeeeeELLEeeeeeeehhhhhhhhhhhlllleeeee DSSP ---------------------------------LLLEEELLEEEEEElllllleeEEEEE Query ---------------------------------RKLSKSVPVKLELTgdkasnvsSISYS 31 ident || | Sbjct lpdgqslptlvrqvnldkrrrrpehvdffvlsdEPVEMYVPLRFVGT--pagvraGGVLQ 118 DSSP llllleeeeeeeeeeelllllleeeeeeeelllLLEEEEEEEEEELL--lhhhhlLLEEE DSSP ELLLLLEEEELHHHHhhLLLEEEEEELlllllLEEEEE--ELLL-LLEEEEL--lEEEEE Query FDRGHVTIVGSQEAMdkIDSITVPVDIsqvteDTSKTL--ELKA-EGVTVQP--sTVKVN 86 ident | | | | || || Sbjct EIHRDILVKVSPRNI--PEFIEVDVSG---leIGDSLHasDLKLpPGVELAVspeETIAA 173 DSSP LLLLEEEEEELHHHL--LLLEEEELLL---llLLLEEEhhHLLLlLLLEELLlllLEEEE DSSP EEEEELL--lllllll Query LKVTQKL--ehhhhhh 100 ident Sbjct VVPPEDVeklaeeaaa 189 DSSP EELLLLLlhhhhhhhl
DSSP llllllleeellEEEEEELlLLLLeEEEE--EEELLlLLEEEeLHHHHHHLLL--EEEEE Query kislrklsksvpVKLELTGdKASNvSSIS--YSFDRgHVTIVgSQEAMDKIDS--ITVPV 56 ident | | | Sbjct ------mktlydLPIVLRN-LPED-LVLEkpLPEVS-VTIRA-YPEILNNLTKeqISLWI 50 DSSP ------lllhhhLLLEELL-LLLL-EEELllLLLLL-LLLLL-LHHHHHLLLLllLLLEE DSSP ELLLLL-LLEEEEE-elLLLLEEEELlEEEEEEEEEELLLL-LLLLL-- Query DISQVT-EDTSKTL-elKAEGVTVQPsTVKVNLKVTQKLEH-HHHHH-- 100 ident | | | | |||| Sbjct DATGKAvGEHTVKIywqLPAGIEMVS-IPDVTYTLKAKEDPlEHHHHhh 98 DSSP LLLLLLlLLEEEELlllLLLLLLLLL-LLEEEELEEELLLLlLLLLLll
DSSP --LLLLLLLE-EELLEEEEEElllllleeEEEE-EELLlLLEEEEL--------hhhhhH Query --KISLRKLS-KSVPVKLELTgdkasnvsSISY-SFDRgHVTIVGS--------qeamdK 48 ident || | Sbjct mpTFDHGNLSlGELELTVLYD------eeRYDIvEQTE-TVQVDLEgprgvltvfrfarP 53 DSSP llLLLLEEEEeEEEEEEEELL------llLLEEeELLL-EEEEEEEelhhhhhhhllllL DSSP LLLEEEEEELlllllLEEEEEELLL------lLEEEELLEEEEEEEEEE----------- Query IDSITVPVDIsqvteDTSKTLELKA------eGVTVQPSTVKVNLKVTQ----------- 91 ident | | | ||| | | | | Sbjct SYEVFVDLTE---agEGSHTVDVEHrgfpgdlAVTVEPRMARVQLEERQtvsvpvtvemi 110 DSSP LLEEEEELLL---llLEEEEEELEEellllllEEEELLLEEEEEEELLLlllllllllll DSSP lllllllll Query klehhhhhh 100 ident Sbjct nlehhhhhh 119 DSSP lllllllll
DSSP lLLLLLLEEELLEEEeeelllllleeeeeeEELLLLLEEEE--------LHHHHHHL--L Query kISLRKLSKSVPVKLeltgdkasnvssisySFDRGHVTIVG--------SQEAMDKI--D 50 ident | | | | Sbjct -MHKDIFTSVVRVRG---------------SKKYNVVPVKSnkpveiskWIDFSNVLsrL 44 DSSP -LLLEEEEEEEEELL---------------LLLLLEEEEEEeeeelhhhHHHHHHHHllL DSSP LEEEeeellllllleeeeeelLLLL--------EEEElLEEEEEEEEE-ELLLllllll Query SITVpvdisqvtedtsktlelKAEG--------VTVQpSTVKVNLKVT-QKLEhhhhhh 100 ident | Sbjct YVGV-----------ptksgnVVCKnimntgvdIICT-KNLPKDSLEHhHHHH------ 85 DSSP EELL-----------llllleEEEEllllllleEEEL-LLLLLLLLLLlLLLL------
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct meltakprtpkqkldesmiaavaynkennvsfaldrkafdrafrqqsttglfditvegge 60 DSSP llllllllllllllllllleeeeeelleeeeeeelllhhhhhhhhhllllllllllllll DSSP --------------------------LLLLLL-LEEELLEEEEEelllllleeEEEEEEL Query --------------------------KISLRK-LSKSVPVKLELtgdkasnvsSISYSFD 33 ident | | Sbjct tfpalvkavqmdkrkrapihvdfymvTYGEPVeVSVPVHTTGRS-----qgevQGGLVDI 115 DSSP llleeeeelllllllllllleeeeelLLLLLLlEEEEEELLLLL-----llhhHHLLEEE DSSP LlLLEE-EELH--HHHHhLLLEEEEEelllllllEEEEEE---LLLLL-----eeeeLLE Query RgHVTI-VGSQ--EAMDkIDSITVPVdisqvtedTSKTLE---LKAEG-----vtvqPST 82 ident | | | | Sbjct VvHNLQiVAPGprRIPQ-ELVVDVTK------mnIGDHITagdIKLPEgctlaadpeLTV 168 DSSP LlLLEEeELLLllLLLL-LEELLLLL------llLLLEELlhhHLLLLlllllllllLLL DSSP EEEEEEEeelllllllll Query VKVNLKVtqklehhhhhh 100 ident | | Sbjct VSVLPPR---------lt 177 DSSP EEEELLL---------ll
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct gvtppqitaqtyvlmdynsgailtalnpdqrqypasltkmmtsyvvgvalkqgkihntdm 60 DSSP lllllllllleeeeeellllleeeeellllllllhhhhhhhhhhhhhhhhhlllllllle DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct vtigesawgrnfpdsskmfldlntqvsvadlnrgvivvsgndatvalaehisgnvpnfve 120 DSSP eellllllhhhllllllllllllleeehhhhhhhhhhhllhhhhhhhhhhhhllhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct tmnkyvqqfglkntnfttphglddpnqyssardmaiigahiirdlpeeykiysekdftfn 180 DSSP hhhhhhhhllllllllllllllllllllllhhhhhhhhhhhhhhlhhhhhhhhlleeeel DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct kikqpnrngllwdktinvdgmktghtsqagynlvasattsnnmrlisvvmgvptykgrev 240 DSSP leeeelllhhhhlllleeeeeeeeeellleeeeeeeeellllleeeeeeeeellhhhhhh DSSP --lLLLL---LLEEELLEE----eeeelllLLLEE-EEEEEE-LLLLLEEEelhhHHHHL Query --kISLR---KLSKSVPVK----leltgdkASNVS-SISYSF-DRGHVTIVgsqeAMDKI 49 ident | | || Sbjct eskKLLQwgfANFETFKTLeagkeiseqrvYYGDKnSVKLGAfMDHFITIP---kGKQSE 297 DSSP hhhHHHHhhhHHEEEEEEElllleeeeeeeELLLLlEEEEELlLLEEEEEE---lLLLLL DSSP --lleeeeeELLL-lLLLE--EEEEELLLLleeeeLLEEEEEE-EEEELllllllll Query --dsitvpvDISQ-vTEDT--SKTLELKAEgvtvqPSTVKVNL-KVTQKlehhhhhh 100 ident | Sbjct vkaryeladKNLQapLAKGqvIGKVVYALD--gkdIASANLQVmNDVGE-------- 344 DSSP leeeeeellLLEEllLLLLleEEEEEEEEL--leeEEEEEEEElLLLLL--------