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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3by6-E 14.2 2.1 114 124 28 PDB MOLECULE: PREDICTED TRANSCRIPTIONAL REGULATOR;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3by6E Z-score=14.2
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DSSP -lllllLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLHHHHHHHHHHHHH Query -nptfhADKPIYSQISDWXKKQXITGEWKGEDKLPSVREXGVKLAVNPNTVSRAYQELER 59 ident | | | | | | | |||||| ||||| || ||| Sbjct qamaitQKRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEA 60 DSSP llllllLLLLHHHHHHHHHHHHHHLLLLLLLLEELLHHHHHHHLLLLHHHHHHHHHHHHH DSSP LLLEEEELLLEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHLL Query AGYIYAKRGXGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAIELLIKRSRN 119 ident | | | | | | | | | Sbjct QKVIRTIPGKGTFITGNTASVKNSNQNRLLADLSQVIAELIKSGVKGERIKKIVNDILGG 120 DSSP LLLEEEELLLEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHH DSSP ---- Query ---- 119 ident Sbjct knae 124 DSSP hhhl