Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1wu7-A 35.0  2.6  407   424   24 PDB  MOLECULE: HISTIDYL-TRNA SYNTHETASE;                                  


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=1wu7A Z-score=35.0

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DSSP  LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLEELLLLLEEEHHHHhHHHL----
Query KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLqAKGN----   56
ident         ||  | |     |     |     |  ||  |  |  | |            
Sbjct RLQIEKIRGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLY-RIKSgeel   59
DSSP  LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLEELLLLLEEELHHH-HLLLlllh


DSSP  LLLLLLLLLL-lLLEEELLLLHHHHHHHHHHHhHHLLLLEEEEELLEEELLL------LL
Query QNIIYGLEPI-lEARALKFDQTVPLAAYIARHlNDLTFPFARYQXDVVFRGE------FR  109
ident     |           |    |            ||  |   |    | | |       |
Sbjct LQQTYSFVDKggREVTLIPEATPSTVRXVTSR-KDLQRPLRWYSFPKVWRYEepqagrYR  118
DSSP  HHHLLEEELLllLEEEELLLLHHHHHHHHLLL-LLLLLLEEEEELLEEELLLllllllLL


DSSP  EEEEEEEEEELllLLLHHHHHHHHHHHHHHHHHHLL-LLEEEEEEEHHHHHHHHHHLLLL
Query QFRQCDIDVVGreKLSLLYDAQXPAIITEIFEAVNI-GDFVIRINNRKVLTGFFQSLNIS  168
ident    |   |  |    |   ||   |    |           |||| ||           |
Sbjct EHYQFNADIFG--SDSPEADAEVIALASSILDRLGLqDIYEIRINSRKIXEEIIGGXTSS  176
DSSP  EEEEEEEEEEL--LLLHHHHHHHHHHHHHHHHHLLLlLLEEEEEEEHHHHHHHHHLLLLL


DSSP  HhhHHHHHHHHLLHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLLLlhhhHHHHHHHHH
Query EtqIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGsvddVLDKLKHLS  228
ident      |  ||||   ||        |   ||       | |            |      
Sbjct D--PFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSXIADLCSGTR----GIDEXARIT  230
DSSP  L--HHHHHHHHHLLLLLLHHHHHHHHHHLLLLHHHHHHHHHHHHLLL----LHHHHHHHL


DSSP  HHllllhhhHHHHHHHHHHHHHHHHLLLLHhhEEELLLLLLLLLLEEEEEEEEEELLlHH
Query QTlpeseqfNLGVSELETVITGVRNLGVPDkrFCIDLAIARGLNYYTGTVYETTLIGhEA  288
ident                   |       ||       |  | ||| |||| | |        
Sbjct GK------sSEEIARXAAVEDLLASYGVKN--VRYDFSIVRGLSYYTGIVFEAYDRS-GQ  281
DSSP  LL------lLHHHHHHHHHHHHHHHLLLLL--LEELLLLLLLLLLLLLEEEEEEELL-LL


DSSP  HLLLLEEEEELLLLHHHLLLLLLEEEEEEEHHHHHHHHHhLLLLLLLLllLLLEEELLLL
Query LGSICSGGRYEELVGTFIGEKXPGVGISIGLTRLISRLLkAGILNTLPptPAQVVVVNXQ  348
ident    |  ||||  |     ||  | ||   |       |               |      
Sbjct FRAILGGGRYDNLASLXSGESVPAVGFGXGDAVISLLLK-RENVQIPR-eKKSVYICRVG  339
DSSP  LLLLLEEEELLLHHHHHHLLLLLEEEEEEEHHHHHHHHH-HLLLLLLL-lLLEEEEEEEL


DSSP  HHHHHHHHHHHHHHHHLLLLEEELLLLLLHHHHHHHHHHHLLLEEEELLHHHHHLLLLEE
Query DELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSL  408
ident           |  ||  | ||      | |  |   |   |  | || |           
Sbjct KINSSIXNEYSRKLRERGXNVTVEIXERGLSAQLKYASAIGADFAVIFGERDLERGVVTI  399
DSSP  LLLHHHHHHHHHHHHLLLLEEEELLLLLLHHHHHHHHHHLLLLEEEEEEHHHHHLLEEEE


DSSP  EELLLLEEEELL-LLHHHHHHHLL-
Query KDLQSGEQVEVA-ADLAEEIKRRL-  431
ident      | |  |      |       
Sbjct RNXYTGSQENVGlDSVVEHLISQAt  424
DSSP  EELLLLLEEEEEhHHHHHHHHHLLl