Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1j32-A 44.8 2.0 365 388 22 PDB MOLECULE: ASPARTATE AMINOTRANSFERASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1B Sbjct=1j32A Z-score=44.8
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DSSP -LHHHHHHLLL-lllllllllllllllllLLLEELLLLLLlLLLLLLLHHHHHHHHHHHL Query -SIEAKFKKLG-rqsaaglealirgapieGRPVDFSHGDVdAHEPTPGAFDLFSAGVQSG 58 ident | || | | | Sbjct mKLAARVESVSpsmtliidakakamkaegIDVCSFSAGEP-DFNTPKHIVEAAKAALEQG 59 DSSP lLLLHHHHLLLlllllllhhhhhhhhlllLLLEELLLLLL-LLLLLHHHHHHHHHHHHLL DSSP hHHHLLLLLLLHHHHHHHHHHHHHHHLLLLLLlLLEEEELHHHHHHHHHHHLLLLLLLEE Query gVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDArDGLIITPGTQGALFLAVAATVARGDKV 118 ident | | | | | | | | | | | | || | Sbjct -KTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-DNILVTNGGKQSIFNLMLAMIEPGDEV 117 DSSP -LLLLLLLLLLHHHHHHHHHHHHHHHLLLLLH-HHEEEELHHHHHHHHHHHHHLLLLLEE DSSP EEEELLLHHHHHHHHHLLLEEEEEElLLLLlllllLLLLHHHHHHHHHLLLLEEEEELLL Query AIVQPDYFANRKLVEFFEGEXVPVQlDYVSadetrAGLDLTGLEEAFKAGARVFLFSNPN 178 ident | | | || | | | | | Sbjct IIPAPFWVSYPEMVKLAEGTPVILP-TTVE---tqFKVSPEQIRQAITPKTKLLVFNTPS 173 DSSP EEELLLLLHHHHHHHHLLLEEEEEL-LLHH---hlLLLLHHHHHHHLLLLEEEEEEELLL DSSP LLLLLLLLHHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLLLLLHHHLLLLLHHHEEEEE Query NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIX 238 ident || | || | || | | | | | | | | | | Sbjct NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS 233 DSSP LLLLLLLLHHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLLLLLHHHLLHHHHHLEEEEE DSSP LLL-LLLLHHHLLEEEEELHHHHHHHHHHHHHHLLLLLHHHHHHHHHLLLLLLLHHHHHH Query GPS-TESLSGYRLGVAFGSRAIIARXEKLQAIVSLRAAGYSQAVLRGWFDEAPGWXEDRI 297 ident | | | | | | | | | Sbjct GFAkTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEML 293 DSSP ELLlLLLLLLLLLEEEELLHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHLLLHHHHHHH DSSP HHHHHHHHHHHHHHHL-LLLLLLLLLLLLEELLLLLLLLLLHHHHHHHHHHHHLEELEEH Query ARHQAIRDELLHVLRG-EGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPG 356 ident | | | | | | | || | | | | | || Sbjct AAFAERRRYMLDALNAmPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPG 353 DSSP HHHHHHHHHHHHHHHLlLLLLLLLLLLLLEELLLLHHHLLLHHHHHHHHHHHHLEELEEH DSSP HHLLllLLLLEEEELLLLHHHHHHHHHHHHHHHHHLLl Query TEFSphTADSVRLNFSQDHEAAVAAARRIVTLVERYRa 394 ident | | || | | Sbjct AAFG--ADDCIRLSYATDLDTIKRGMERLEKFLHGIL- 388 DSSP HHHL--LLLLEEEELLLLHHHHHHHHHHHHHHHHHHL-