Results

Matches to full PDB Dali: mol1B,

Query: mol1B

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2kl3-A 14.4  1.8  108   132   28 PDB  MOLECULE: ALR3790 PROTEIN;                                           


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1B Sbjct=2kl3A Z-score=14.4

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DSSP  lhhhhhhhhhhhhLLEEEHHHHHHHHHLLLLLEEEEELLLHHHHHHLLLLLLEELLHHHL
Query npneayrhyxkklSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI   60
ident                  |   |      |       ||||   |   ||  |   |    
Sbjct ------------mEPQSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDL   48
DSSP  ------------lLLEEEHHHHHHHHHLLLLLEEEEELLLHHHHHHLEELLLEELLLLLH


DSSP  LlLLLL-LLLLLLEEEEELLLllLLHHHHHHHHHHHLLL-EEEEEELHHHHHHHLLLLLL
Query NeDTTK-RLSKEKVIITYCWGpaCNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVE  118
ident   |     | |   |  |  |        |       ||  | || ||   |    |  |
Sbjct V-DRASsSLEKSRDIYVYGAG--DEQTSQAVNLLRSAGFeHVSELKGGLAAWKAIGGPTE  105
DSSP  H-HHHHhHLLLLLEEEEELLL--HHHHHHHHHHHHHLLLlLEEEEELHHHHHHHLLLLEE


DSSP  LLLHHH--------lllllllllllll
Query GTLGAK--------adlfwnxkkesle  137
ident |                          
Sbjct GIIESRtpagaddynvvsrlehhhhhh  132
DSSP  LLLLLLlllllllllllllllllllll