Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2kl3-A 14.4 1.8 108 132 28 PDB MOLECULE: ALR3790 PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1B Sbjct=2kl3A Z-score=14.4
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DSSP lhhhhhhhhhhhhLLEEEHHHHHHHHHLLLLLEEEEELLLHHHHHHLLLLLLEELLHHHL Query npneayrhyxkklSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI 60 ident | | | |||| | || | | Sbjct ------------mEPQSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDL 48 DSSP ------------lLLEEEHHHHHHHHHLLLLLEEEEELLLHHHHHHLEELLLEELLLLLH DSSP LlLLLL-LLLLLLEEEEELLLllLLHHHHHHHHHHHLLL-EEEEEELHHHHHHHLLLLLL Query NeDTTK-RLSKEKVIITYCWGpaCNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVE 118 ident | | | | | | | || | || || | | | Sbjct V-DRASsSLEKSRDIYVYGAG--DEQTSQAVNLLRSAGFeHVSELKGGLAAWKAIGGPTE 105 DSSP H-HHHHhHLLLLLEEEEELLL--HHHHHHHHHHHHHLLLlLEEEEELHHHHHHHLLLLEE DSSP LLLHHH--------lllllllllllll Query GTLGAK--------adlfwnxkkesle 137 ident | Sbjct GIIESRtpagaddynvvsrlehhhhhh 132 DSSP LLLLLLlllllllllllllllllllll