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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1vi0-A 13.3 3.0 163 189 15 PDB MOLECULE: TRANSCRIPTIONAL REGULATOR;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1vi0A Z-score=13.3
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DSSP lHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHLLLLHHHHHHHLLLHHHHH-HHHHHHHHH Query dPXRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELI-DAWFDRADS 59 ident | | | ||| | || | | ||| | Sbjct -PKYXQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILiSLFKEKXGQ 59 DSSP -LHHHHHHHHHHHHHHHHLHHHLLHHHHHHHHLLLHHHHHHHLLLHHHHHhHHHHHHHHH DSSP HHHHHLLLllHHHL-LHHHHHHHHHHHHHHHHHL---LHHHHHHHHHHLllLHHHHHHHH Query RXLKEAESagFLDL-VASERIHHLIXIWLDALAV---QRKVTRQXIXSKleHIHIQIPAV 115 ident | | | | || || Sbjct FIERXEED--IKEKaTAKEKLALVISKHFSLLAGdhnLAIVTQLELRQS--NLELRQKIN 115 DSSP HHHHHHHH--HLLLlLHHHHHHHHHHHHHHHHHLlhhHHHHHHLLLLLL--LHHHHHHHH DSSP HHHHHHHHHHHHH----------lllllLHHHHHHHHHHHHHHHHLL----LLHHHHHHH Query XRVSRTVQWVREA----------aqralEESTLTTIYLXTFFFWXRD----ESENSRHTR 161 ident | Sbjct EILKGYLNILDGIltegiqsgeikegldVRLARQXIFGTIDETVTTWvxndQKYDLVALS 175 DSSP HHHHHHHHHHHHHhhhhhhlllllllllHHHHHHHHHHHHHHHHHHHhhllLLLLHHHHH DSSP HHHHHHHHHHHH-l Query QFLKRHLTXAAW-l 174 ident | Sbjct NSVLELLVSGIHnk 189 DSSP HHHHHHHHHLLLll