Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2i0z-A 21.0 2.6 209 416 25 PDB MOLECULE: NAD(FAD)-UTILIZING DEHYDROGENASES;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2i0zA Z-score=21.0
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DSSP leeeeeeeeellllllhhhhhhhhhhlllhhheeeeeeeeeeelllleeeeeeeeeelll Query xirineiklpldheegalldaitkklgipaekvisfnvfrrgydarihliytldiivegd 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP hhhhhhllllllleeellllllllllllllllLLLLEEELLLHHHHHHHHHHHHLLLLLE Query etallakfandphvrqtpdxeykfvakapenlTERPIVIGFGPCGLFAGLVLAQXGFNPI 120 ident |||| || || | | | | Sbjct -------------------------------mHYDVIVIGGGPSGLMAAIGAAEEGANVL 29 DSSP -------------------------------lLLLEEEELLLHHHHHHHHHHHHLLLLEE DSSP EELLLLLhhhhhhhhhhhhhhllllllllllllLLHHHLLLL---LLLL------LLLL- Query IVERGKEvrertkdtfgfwrkrtlnpesnvqfgEGGAGTFSD---GKLY------SQVK- 170 ident | | | || Sbjct LLDKGNK--------------------------LGRKLAISGggrCNVTnrlpldEIVKh 63 DSSP EELLLLL--------------------------LLHHHHHLHhhlLLLEelllhhHHHHl DSSP -----------LLLLHHHHHHHHHHHLLLLhhHHLL--LLLLLlhHHHHHHHHHHHHHHH Query -----------DPNFYGRKVITEFVEAGAPeeILYV--SKPHIgtFKLVTXIEKXRATII 217 ident | || | | | Sbjct ipgngrflysaFSIFNNEDIITFFENLGVK--LKEEdhGRMFPvsNKAQSVVDALLTRLK 121 DSSP llllhhhhhhhHHHLLHHHHHHHHHHLLLL--EEELhhHEEEEllLLHHHHHHHHHHHHH DSSP HLLLEEELLLLEEEEEELLLLEEEEEELLLLEEELLLEEELLLLL-------LHHHHHHH Query ELGGEIRFSTRVDDLHXEDGQITGVTLSNGEEIKSRHVVLAVGHS-------ARDTFEXL 270 ident || || | | | || | | || ||| ||| | Sbjct DLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKsvpqtgsTGDGYAWA 181 DSSP HLLLEEELLLLEEEEEEELLEEEEEEELLLLEEELLLEEELLLLLllhhhllLLHHHHHH DSSP HhLLLL-LEELleeeeeeeeeehhhhhhhhllllllllllllllllleeellllleeeee Query HeRGVY-XEAKpfsvgfriehkqsxidearfgpnaghpilgaadyklvhhckngrtvysf 329 ident Sbjct E-KAGHtITEL---------------------------------fptevpilsnepfird 207 DSSP H-HLLLlEEEE---------------------------------eelllleelllhhhhl DSSP eeeeeeeeeellllllllleeeelllllllleeeeeeeeeelllllllllllhhhhhhhh Query cxcpggtvvaatseegrvvtngxsqysraernansaivvgispevdypgdplagirfqre 389 ident Sbjct rslqglalrdinlsvlnaiishkmdmlfthfglsgpaalrcsqfvvkalkkfktntiqms 267 DSSP lllllleeeeeeeeellleeeeeeeeeellleeelhhhhhhhhhhhhhhhhhlllleeee DSSP hhhhhhhhlllllleeeeehhhhhhllllllllllllllllleeellhhhlllhhhhhhh Query lesnayklggenydapaqkigdflkgrdpsqlgdvepsftpgikltdlskalppfaveai 449 ident Sbjct idalpeenseqlfqrmlkqmkedpkkgiknvlkgyvperyflfllekneidgseqagqvs 327 DSSP eellllllhhhhhhhhhhhhlllllllhhhhllllllhhhhhhhhhhllllllllhhhll DSSP hhhhhhhhllllllllllleeeeeelllLLLEEL---LLLL-LLLLLLLLLEEELHHHHL Query reaipafdrkikgfasedglltgvetrtSSPVCI---KRGK-DFQSVNLKGFYPAGEGAG 505 ident | | | || Sbjct hekiralvkdfkeftvnvngtqsiekafVTGGGVsvkEINPkEMSSKFTNGLYFCGEVLD 387 DSSP hhhhhhhhhhhhheeeeeleellhhhllLEEEEElhhHEELlLLEELLLLLEEELHHHLL DSSP LLL-----LHHHHHHHHHHHHHHHHHHHHhhhll Query YAG-----GILSAGIDGIKVAEAVARDIVaaxen 534 ident | | || | Sbjct IHGytggyNITSALVTGRIAGTTAGENAK----- 416 DSSP LLLllllhHHHHHHHHHHHHHHHHHHHHL-----