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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2ywr-A 20.3 2.3 196 216 26 PDB MOLECULE: PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2ywrA Z-score=20.3
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DSSP lleeeeeeeeellllhhhhhhhhhhhlleeeeeeeeeeelllleeeeeeeeeellllllh Query hhqyvltlscpdragivsavstflfengqnildaqqyndtesghffxrvvfnaaakvipl 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP hhhhhhhhhhhhhllleeeeeelllLEEEEEEELLLLHHHHHHHHHHHLLLLLEEEEEEE Query aslrtgfgviaakftxgwhxrdretRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIV 120 ident | ||| | | | Sbjct -------------------------XLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVI 35 DSSP -------------------------LEEEEEEELLLLHHHHHHHHHHHLLLLLEEEEEEE DSSP ELLLhHHLL-LLLL-LLLLEEELLLL-LLLHHHHHHHHHHHHHHHLLLEEEELLLLLLLL Query SNHPrETFS-GFDF-GDIPFYHFPVN-KDTRRQQEAAITALIAQTHTDLVVLARYXQILS 177 ident | | | ||||| | ||| Sbjct SDNP-KAYAiERCKkHNVECKVIQRKeFPSKKEFEERXALELKKKGVELVVLAGFXRILS 94 DSSP ELLL-LLHHhHHHHhHLLLEEELLHHhLLLHHHHHHHHHHHHHHLLLLEEEELLLLLLLL DSSP HHHHHHLLLLEEEEEEEL-lLLLLllLHHHHHHHHLLLEEEEEEEELLLLLLLLLEEEEE Query DEXSARLAGRCINIHHSF-lPGFKgaKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQD 236 ident |||| | || ||| | | | | | || | | Sbjct HNFLKYFPNKVINIHPSLipAFQG-lHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQA 153 DSSP HHHHLLLLLLEEEEELLLllLLLL-lLHHHHHHHHLLLEEEEEEEELLLLLLLLLEEEEE DSSP EEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEELLEEEELLL----------- Query VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFTD----------- 285 ident | | | | | || | ||| | Sbjct VVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRIIIDGRKVIVKDAtygtlpvnpal 213 DSSP EEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEELLEEEELLLlllllleelll DSSP --- Query --- 285 ident Sbjct eif 216 DSSP lll