Results

Matches to full PDB Dali: mol1C,

Query: mol1C

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2fa5-B 17.0  1.9  134   142   27 PDB  MOLECULE: TRANSCRIPTIONAL REGULATOR MARR/EMRR FAMILY;                


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1C Sbjct=2fa5B Z-score=17.0

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DSSP  ------LLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHLLLLLHHHH
Query ------INIDRHATAQINXLANKLXLKSSTAYTQKFGIGXTEWRIISVLSSASDCSVQKI   54
ident        |           | |         |    |    ||| |  |      |    
Sbjct sphpvlLNLEQFLPYRLSVLSNRISGNIAKVYGDRYGXAIPEWRVITILALYPGSSASEV   60
DSSP  llllllLLHHHLHHHHHHHHHHHHHHHHHHHLHHHHLLLHHHHHHHHHHHHLLLLLHHHH


DSSP  HHHHLLLHHHHHHHHHHHHHLLLEEEEllllllllLEEEELHHHHHHHHHHHHHHHHHHH
Query SDILGLDKAAVSRTVKKLEEKKYIEVNghsedkrtYAINLTEXGQELYEVASDFAIEREK  114
ident ||    || |||| |  | |   |               |   |   ||       | | 
Sbjct SDRTAXDKVAVSRAVARLLERGFIRRE--------SXLALSPAGRQVYETVAPLVNEXEQ  112
DSSP  HHHHLLLHHHHHHHHHHHHHHLLEEEL--------LLEEELHHHHHHHHHHHHHHHHHHH


DSSP  HHLLLLLHHHHHHHHHHHHHHHH-HHHLL-
Query QLLEEFEEAEKDQLFILLKKLRN-KVDQX-  142
ident  |   |   |   |  |   |       | 
Sbjct RLXSVFSAEEQQTLERLIDRLAKdGLPRXa  142
DSSP  HHHLLLLHHHHHHHHHHHHHHHHlLHHHLl