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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2fa5-B 17.0 1.9 134 142 27 PDB MOLECULE: TRANSCRIPTIONAL REGULATOR MARR/EMRR FAMILY;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1C Sbjct=2fa5B Z-score=17.0
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DSSP ------LLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHLLLLLHHHH Query ------INIDRHATAQINXLANKLXLKSSTAYTQKFGIGXTEWRIISVLSSASDCSVQKI 54 ident | | | | | ||| | | | Sbjct sphpvlLNLEQFLPYRLSVLSNRISGNIAKVYGDRYGXAIPEWRVITILALYPGSSASEV 60 DSSP llllllLLHHHLHHHHHHHHHHHHHHHHHHHLHHHHLLLHHHHHHHHHHHHLLLLLHHHH DSSP HHHHLLLHHHHHHHHHHHHHLLLEEEEllllllllLEEEELHHHHHHHHHHHHHHHHHHH Query SDILGLDKAAVSRTVKKLEEKKYIEVNghsedkrtYAINLTEXGQELYEVASDFAIEREK 114 ident || || |||| | | | | | | || | | Sbjct SDRTAXDKVAVSRAVARLLERGFIRRE--------SXLALSPAGRQVYETVAPLVNEXEQ 112 DSSP HHHHLLLHHHHHHHHHHHHHHLLEEEL--------LLEEELHHHHHHHHHHHHHHHHHHH DSSP HHLLLLLHHHHHHHHHHHHHHHH-HHHLL- Query QLLEEFEEAEKDQLFILLKKLRN-KVDQX- 142 ident | | | | | | | Sbjct RLXSVFSAEEQQTLERLIDRLAKdGLPRXa 142 DSSP HHHLLLLHHHHHHHHHHHHHHHHlLHHHLl