Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1ocy-A  7.2  2.7  115   198   27 PDB  MOLECULE: BACTERIOPHAGE T4 SHORT TAIL FIBRE;                         


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=1ocyA Z-score=7.2

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DSSP  ---------LLLLLLLLEEELLLLLLL-LEEELLLLLLLLLLLHHHHHHLLL--------
Query ---------SSYPIGAPIPWPSDSVPA-GFALMEGQTFDKSAYPKLAVAYPS--------   42
ident             | ||   |  || |        | |   |  |  |             
Sbjct rvvtqneidRTIPVGAIMMWAADSLPSdAWRFCHGGTVSASDCPLYASRIGTryggsssn   60
DSSP  lllllhhhhHHLLLLLEEEELLLLLLLlLEEELLLLLLLLLLLHHHHHHLLLllllllll


DSSP  LLLLLLLLLLLLLLLLL-------------------------LLLLLLLLLLLLLLLLLL
Query GVIPDMRGQTIKGKPSG-------------------------RAVLSAEADGVKAHSHSA   77
ident    |||||    |   |                           |          | |  
Sbjct PGLPDMRGLFVRGSGRGshltnpnvngndqfgkprlgvgctgGYVGEVQKQQMSYHKHAG  120
DSSP  LLLLLLLLLLLLLLLLLhhhhlhhhlllllllllllllllllLLLLLLLLLLLLLLLLLL


DSSP  LL-----------------LLLLLLlllllllllllllllllllllllllllllllllll
Query SA-----------------SSTDLGtkttssfdygtkgtnstgghthsgsgststngehs  120
ident                      |  |                                   
Sbjct GFgeyddsgafgntrrsnfVGTRKG-----------------------------------  145
DSSP  LLlllllllllllllllllLLLLLL-----------------------------------


DSSP  lllleellllllllleelllllllllllllllllllllllllllllllllllllllllll
Query hyieawngtgvggnkmssyaisyraggsntnaagnhshtfsfgtssagdhshsvgigaht  180
ident                                                             
Sbjct ------------------------------------------------------------  145
DSSP  ------------------------------------------------------------


DSSP  llllllLLLLLLLLLLL--------------------LLLLLLLLLLLLEEEEELL-
Query htvaigSHGHTITVNST--------------------GNTENTVKNIAFNYIVRLA-  216
ident               |                         |    ||  |||     
Sbjct ----ldWDNRSYFTNDGyeidpasqrnsrytlnrpelIGNETRPWNISLNYIIKVKe  198
DSSP  ----llLLLLLLLLLLLlllllhhhllhhhlllllllLLLLLLLLLLLLEEEEELLl