Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1ocy-A 7.2 2.7 115 198 27 PDB MOLECULE: BACTERIOPHAGE T4 SHORT TAIL FIBRE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1ocyA Z-score=7.2
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DSSP ---------LLLLLLLLEEELLLLLLL-LEEELLLLLLLLLLLHHHHHHLLL-------- Query ---------SSYPIGAPIPWPSDSVPA-GFALMEGQTFDKSAYPKLAVAYPS-------- 42 ident | || | || | | | | | | Sbjct rvvtqneidRTIPVGAIMMWAADSLPSdAWRFCHGGTVSASDCPLYASRIGTryggsssn 60 DSSP lllllhhhhHHLLLLLEEEELLLLLLLlLEEELLLLLLLLLLLHHHHHHLLLllllllll DSSP LLLLLLLLLLLLLLLLL-------------------------LLLLLLLLLLLLLLLLLL Query GVIPDMRGQTIKGKPSG-------------------------RAVLSAEADGVKAHSHSA 77 ident ||||| | | | | | Sbjct PGLPDMRGLFVRGSGRGshltnpnvngndqfgkprlgvgctgGYVGEVQKQQMSYHKHAG 120 DSSP LLLLLLLLLLLLLLLLLhhhhlhhhlllllllllllllllllLLLLLLLLLLLLLLLLLL DSSP LL-----------------LLLLLLlllllllllllllllllllllllllllllllllll Query SA-----------------SSTDLGtkttssfdygtkgtnstgghthsgsgststngehs 120 ident | | Sbjct GFgeyddsgafgntrrsnfVGTRKG----------------------------------- 145 DSSP LLlllllllllllllllllLLLLLL----------------------------------- DSSP lllleellllllllleelllllllllllllllllllllllllllllllllllllllllll Query hyieawngtgvggnkmssyaisyraggsntnaagnhshtfsfgtssagdhshsvgigaht 180 ident Sbjct ------------------------------------------------------------ 145 DSSP ------------------------------------------------------------ DSSP llllllLLLLLLLLLLL--------------------LLLLLLLLLLLLEEEEELL- Query htvaigSHGHTITVNST--------------------GNTENTVKNIAFNYIVRLA- 216 ident | | || ||| Sbjct ----ldWDNRSYFTNDGyeidpasqrnsrytlnrpelIGNETRPWNISLNYIIKVKe 198 DSSP ----llLLLLLLLLLLLlllllhhhllhhhlllllllLLLLLLLLLLLLEEEEELLl