Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1zki-A 16.6 1.5 114 126 29 PDB MOLECULE: HYPOTHETICAL PROTEIN PA5202;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1zkiA Z-score=16.6
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DSSP llhhhllllllllhhhhhhhhhhhhhhhhhhlllllLHHHHHHLLEEEELlllLEEEEEE Query ivdkxerflstaneeekdvlssivdgllakqerryaTYLASLTQIESQERedgRFEVRLP 60 ident | ||||| Sbjct ----------------------------xpareqxiSAYSELVGLDPVSLgdgVAEVRLP 32 DSSP ----------------------------lllhhhllLHHHHHHLLEEEEElllEEEEEEE DSSP LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLEEEEEEEEELLLLLLLEEEEE Query IGPLVNNPLNXVHGGITATLLDTAXGQXVNRQLPDGQSAVTSELNIHYVKPGXGTYLRAV 120 ident | ||| | | || || | | | | | Sbjct XAAHLRNRGGVXHGGALFSLXDVTXGLACSSSHGFDRQSVTLECKINYIRAVADGEVRCV 92 DSSP LLHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLEEEEEEEEEELLLLLLLEEEEE DSSP EEEEEELLLEEEEEEEEELlLLLEEEEEEEEEEL- Query ASIVHQGKQRIVVEGKVYTdQGETVAXGTGSFFV- 154 ident | | | ||| | || | | | Sbjct ARVLHAGRRSLVVEAEVRQ-GDKLVAKGQGTFAQl 126 DSSP EEEEEELLLEEEEEEEEEE-LLEEEEEEEEEEEEl