Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1nxp-A 17.1 1.5 106 118 34 PDB MOLECULE: DNA-BINDING RESPONSE REGULATOR;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1nxpA Z-score=17.1
back to top
DSSP lLEEEEELLLHHHHHHHHHHHLL-LLEEEEELLHHHHHHHHHHHLLLEEEEELLL----- Query lKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDXDI----- 54 ident ||||| | | | | | ||||| || ||| Sbjct -KKILIVDDEKPISDIIKFNMTKeGYEVVTAFNGREALEQFEAEQPDIIILDLMLpeidg 59 DSSP -LEEEEELLLHHHHHHHHHHHHHlLLEEEEELLHHHHHHHHHHHLLLEEEEELLLlllhh DSSP -LHHHHHHLLlllLLLLEEEEEL-LLLL-lLLLL--LLLEEEELLLLHHHHHHHHHHHHH Query -NLCLKLKRSkglKNVPLILLFS-SAIV-nGLHS--GADDYLTKPFNRNDLLSRIEIHLR 109 ident || | ||||| |||| | | || Sbjct lEVAKTIRKT---SSVPILMLSAkDSEFdkVIGLelGADDYVTKPFSNRELQARVKALLR 116 DSSP hHHHHHHHHH---LLLLEEEEELlLLHHhhHHHHhlLLLEEEELLLLHHHHHHHHHHHHH DSSP HHhhhhhl Query TQnyysdl 117 ident Sbjct RS------ 118 DSSP LL------