Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3ij5-A 30.4 1.6 179 185 49 PDB MOLECULE: 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3ij5A Z-score=30.4
back to top
DSSP lHHHHH------HHHHHHHHHHLLLEEEELLLLLLLLLLLEELLLLLEELLLLHHHHHHH Query sLNTEI------EXNELLEKAKKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGXGL 54 ident | | | |||||||| |||| | | ||| | | || | Sbjct -NTAYIdtcygpVADDVIQRAANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGI 59 DSSP -LLLEEllllllEEHHHHHHHLLLLEEEELLLLLLLLLEEEEELLLLEEEEEEHHHHHHH DSSP HHHHHLLLEEEEELLLLLHHHHHHHHHHLLLEEELLLLLLHHHHHHHHHHHLLLHHHEEE Query KLLXAAGIQVAIITTAQNAVVDHRXEQLGITHYYKGQVDKRSAYQHLKKTLGLNDDEFAY 114 ident | | ||||| | ||||| | || || || | || || Sbjct RCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVAY 119 DSSP HHHHHLLLEEEEELLLLLHHHHHHHHHHLLLEEELLLLLHHHHHHHHHHHHLLLHHHEEE DSSP EELLHHHHHHHHHLLEEEELLLLLHHHHHHLLEELLLLLLLLHHHHHHHHHHHHLLLHHH Query IGDDLPDLPLIQQVGLGVAVSNAVPQVLEFADWRTERTGGRGAVRELCDLILNAQNKAEL 174 ident ||||| | | |||| ||| | | | | | |||||||| ||||| || | | Sbjct IGDDLIDWPVMAQVGLSVAVADAHPLLLPKAHYVTRIKGGRGAVREVCDLILLAQDKLEG 179 DSSP EELLHHHHHHHLLLLEEEELLLLLLLLHHHLLEELLLLLLLLHHHHHHHHHHHHLLLLLL DSSP HHhhHHLL Query AItgYLKQ 182 ident | | Sbjct AT--GLSI 185 DSSP LL--LLLL