Query T0515 putative carboxynorspermidine decarboxylase, Sinorhizobium meliloti, 365 residues
Match_columns 365
No_of_seqs 121 out of 2790
Neff 8.5
Searched_HMMs 22458
Date Fri May 21 18:06:17 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0515.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0515.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p3e_A Diaminopimelate decarbo 100.0 0 0 571.7 34.3 358 3-363 33-416 (420)
2 2qgh_A Diaminopimelate decarbo 100.0 0 0 563.3 35.7 361 2-363 31-417 (425)
3 2oo0_A ODC, ornithine decarbox 100.0 0 0 556.7 30.5 354 3-364 47-439 (471)
4 1f3t_A ODC, ornithine decarbox 100.0 0 0 557.4 29.7 348 3-358 37-424 (425)
5 1knw_A Diaminopimelate decarbo 100.0 0 0 545.2 35.4 353 3-363 25-417 (425)
6 1twi_A Diaminopimelate decarbo 100.0 0 0 546.5 33.9 361 2-363 28-426 (434)
7 7odc_A Protein (ornithine deca 100.0 0 0 548.3 29.4 347 2-357 36-423 (424)
8 2o0t_A Diaminopimelate decarbo 100.0 0 0 546.6 30.0 360 2-363 40-446 (467)
9 3btn_A Antizyme inhibitor 1; T 100.0 0 0 551.1 24.9 351 3-363 37-427 (448)
10 2plj_A Lysine/ornithine decarb 100.0 0 0 537.7 32.4 342 3-352 54-418 (419)
11 2j66_A BTRK, decarboxylase; bu 100.0 0 0 534.6 34.4 359 2-363 15-415 (428)
12 2nva_A Arginine decarboxylase, 100.0 0 0 522.0 33.9 333 3-343 16-372 (372)
13 2yxx_A Diaminopimelate decarbo 100.0 0 0 510.9 33.7 360 2-364 11-384 (386)
14 3gwq_A D-serine deaminase; YP_ 99.9 5.1E-22 2.3E-26 159.1 30.8 330 2-354 44-424 (426)
15 3llx_A Predicted amino acid al 99.9 2.4E-19 1.1E-23 142.0 23.6 323 2-353 12-371 (376)
16 1vfs_A Alanine racemase; TIM-b 99.8 1.2E-15 5.3E-20 118.3 22.5 296 3-322 5-342 (386)
17 1xfc_A Alanine racemase; alpha 99.7 3E-14 1.3E-18 109.3 24.9 297 8-322 15-345 (384)
18 2vd8_A Alanine racemase; pyrid 99.7 2.7E-13 1.2E-17 103.1 28.1 318 6-353 12-385 (391)
19 1bd0_A Alanine racemase; isome 99.7 2E-13 8.9E-18 104.0 26.1 297 5-322 7-335 (388)
20 3e5p_A Alanine racemase; ALR, 99.7 2.2E-13 9.7E-18 103.8 23.4 285 5-320 8-335 (371)
21 3kw3_A Alanine racemase; niaid 99.6 1.2E-13 5.3E-18 105.5 20.5 291 6-321 22-345 (376)
22 1rcq_A Catabolic alanine racem 99.6 5.2E-13 2.3E-17 101.3 22.3 286 6-322 5-326 (357)
23 3co8_A Alanine racemase; prote 99.6 1.7E-12 7.8E-17 98.0 23.8 280 5-322 9-337 (380)
24 2rjg_A Alanine racemase; alpha 99.6 1.4E-12 6.2E-17 98.6 22.5 292 4-322 23-348 (379)
25 3hur_A Alanine racemase; struc 99.6 9.7E-13 4.3E-17 99.6 21.5 288 4-322 8-341 (395)
26 2dy3_A Alanine racemase; alpha 99.6 1E-11 4.6E-16 93.0 24.7 283 8-334 7-343 (361)
27 3cpg_A Uncharacterized protein 98.5 7.6E-06 3.4E-10 55.4 13.8 210 2-238 10-270 (282)
28 1ct5_A Protein (yeast hypothet 93.1 0.39 1.7E-05 25.1 17.8 142 10-165 10-185 (256)
29 1w8g_A YGGS, hypothetical UPF0 92.5 0.47 2.1E-05 24.6 18.3 176 12-198 9-204 (234)
30 1vc3_B L-aspartate-alpha-decar 73.8 3.7 0.00017 18.8 6.1 71 279-354 25-95 (96)
31 1uhe_A Aspartate 1-decarboxyla 70.8 4.2 0.00019 18.5 4.1 65 279-350 24-89 (97)
32 2j6v_A UV endonuclease, UVDE; 69.3 4.7 0.00021 18.2 4.9 97 96-200 55-169 (301)
33 2v5j_A 2,4-dihydroxyhept-2-ENE 69.0 4.8 0.00021 18.1 15.5 98 21-119 30-141 (287)
34 1dxe_A 2-dehydro-3-deoxy-galac 68.8 4.8 0.00022 18.1 13.1 183 20-226 9-212 (256)
35 2vws_A YFAU, 2-keto-3-deoxy su 65.0 5.7 0.00025 17.6 15.5 187 21-230 9-216 (267)
36 1pqh_A Aspartate 1-decarboxyla 63.7 6.1 0.00027 17.5 5.1 71 279-354 66-136 (143)
37 2c45_A Aspartate 1-decarboxyla 63.0 6.2 0.00028 17.4 5.1 71 279-354 49-119 (139)
38 1v97_A XD, xanthine dehydrogen 58.8 7.4 0.00033 16.9 5.8 69 158-229 759-827 (1332)
39 2f9h_A PTS system, IIA compone 57.4 7.6 0.00034 16.8 3.4 29 295-323 101-129 (129)
40 1rm6_A 4-hydroxybenzoyl-COA re 52.8 9.2 0.00041 16.3 5.0 68 158-229 206-273 (769)
41 1izc_A Macrophomate synthase i 50.6 9.9 0.00044 16.1 9.6 100 21-120 32-148 (339)
42 1ffv_B CUTL, molybdoprotein of 49.9 10 0.00045 16.0 6.1 67 158-228 229-295 (803)
43 2w3s_B Xanthine dehydrogenase; 49.1 11 0.00047 15.9 6.2 11 195-205 223-233 (777)
44 1i60_A IOLI protein; beta barr 46.3 12 0.00052 15.7 8.7 82 150-231 56-143 (278)
45 1d4b_A CIDE B, human cell deat 38.9 13 0.00057 15.4 2.1 26 334-364 68-93 (122)
46 1olt_A Oxygen-independent copr 37.6 16 0.0007 14.8 3.2 37 146-182 195-231 (457)
47 2z1c_A Hydrogenase expression/ 37.4 15 0.00065 15.0 2.2 16 305-320 31-46 (75)
48 1wbh_A KHG/KDPG aldolase; lyas 36.4 16 0.00073 14.7 5.2 60 37-96 26-91 (214)
49 2uv8_G Fatty acid synthase sub 33.0 19 0.00083 14.4 11.1 12 12-23 628-639 (2051)
50 3mml_B Allophanate hydrolase s 32.2 19 0.00085 14.3 2.7 34 287-322 194-228 (228)
51 1wa3_A 2-keto-3-deoxy-6-phosph 30.8 20 0.0009 14.1 3.2 50 58-109 71-122 (205)
52 1zzo_A RV1677; thioredoxin fol 29.9 21 0.00093 14.0 4.0 37 328-364 93-130 (136)
53 1vhc_A Putative KHG/KDPG aldol 28.1 22 0.001 13.8 5.6 77 32-108 22-106 (224)
54 1w32_A Endo-1,4-beta-xylanase 27.8 16 0.0007 14.8 1.1 42 157-198 211-252 (348)
55 2ot2_A Hydrogenase isoenzymes 27.1 22 0.00096 13.9 1.7 15 306-320 38-52 (90)
56 3bww_A Protein of unknown func 26.4 11 0.00049 15.8 0.1 138 156-299 59-214 (307)
57 2fdr_A Conserved hypothetical 25.1 25 0.0011 13.5 4.6 10 19-28 24-33 (229)
58 2uva_G Fatty acid synthase bet 25.0 26 0.0011 13.5 11.6 10 31-40 894-903 (2060)
59 1mxs_A KDPG aldolase; 2-keto-3 24.5 26 0.0012 13.4 4.9 100 5-107 6-114 (225)
60 3jyn_A Quinone oxidoreductase; 21.9 29 0.0013 13.1 7.5 19 213-231 198-216 (325)
61 3eur_A Uncharacterized protein 21.5 30 0.0013 13.0 5.4 49 314-364 92-140 (142)
62 3dx5_A Uncharacterized protein 20.9 31 0.0014 13.0 7.4 19 40-58 16-35 (286)
63 2o18_A Thiamine biosynthesis l 20.8 31 0.0014 12.9 4.2 115 167-307 161-288 (340)
64 2prv_A Uncharacterized protein 20.1 32 0.0014 12.9 5.3 52 313-364 86-137 (153)
No 1
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5}
Probab=100.00 E-value=0 Score=571.72 Aligned_cols=358 Identities=17% Similarity=0.190 Sum_probs=308.0
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf 88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA 80 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~ 80 (365)
||||||||++.|++|+++|+++| ++++++||+|||+++.|++.+++.|+|+||+|++|+++|++.| +.++++++|+
T Consensus 33 gTP~yv~d~~~i~~n~~~l~~a~--p~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~~p~ 110 (420)
T 2p3e_A 33 GTPLYVYSSNFIKERFEAYRKAF--PDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVG 110 (420)
T ss_dssp CSSEEEEEHHHHHHHHHHHHHHS--TTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECSSC
T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99889989999999999999868--9988999966689989999999819982898589999999859991106874665
Q ss_pred CCHHHHHHHHHCCC-EECCCCHHHHHHHHHH----HCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHH----
Q ss_conf 88668999997288-0021898999999997----25887113115677745543446678871013148999999----
Q T0515 81 YGDNEIDEVVSHAD-KIIFNSISQLERFADK----AAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER---- 151 (365)
Q Consensus 81 k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~----~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~---- 151 (365)
|++++++.|+++|+ .+++||++|+++|.+. .+..++++|+||..+...+....+++..+|||++..+....
T Consensus 111 k~~~~i~~a~~~gv~~~~~ds~~El~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~ 190 (420)
T 2p3e_A 111 KTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYA 190 (420)
T ss_dssp CCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 31367899987401234557788889999888743999679999834877667756557776555564305668888887
Q ss_pred ---HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCC----CCHHHHHHHHHHHHH
Q ss_conf ---736904899850678767799999999999999---9844565166504777898889----788999999999861
Q T0515 152 ---VMDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAFSD 221 (365)
Q Consensus 152 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~ 221 (365)
.+.++.|+|||+|||+.+++.|.++++.+.+++ .+.+.++++||+||||+++|.. .+...+...+.....
T Consensus 191 ~~~~~l~~~GlHfH~gS~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (420)
T 2p3e_A 191 SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLE 270 (420)
T ss_dssp HTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCSTTCCCCCHHHHHHHHTTTC-
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 65479738999980898769838988778999999998887299855453067647567765443104667899998764
Q ss_pred CCCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCC---CCCCCCCCEEEEEEECCCCC
Q ss_conf 2660899971620010550899999974047-7469998265431024201024532---33779994379997066687
Q T0515 222 RYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETA---KVLPNEGSHSYMICGKSCLA 297 (365)
Q Consensus 222 ~~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~G~~C~~ 297 (365)
..+++|++|||||+|++||+|+|+|+++|++ +++|+++|+|+++++.+.+...... ...++....+++|+||||++
T Consensus 271 ~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~ 350 (420)
T 2p3e_A 271 NVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETKERKKVVADIVGPICET 350 (420)
T ss_dssp -CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCCCEEESBCCC---CEEEEECSSSST
T ss_pred CCCCEEEEEECCEEEECEEEEEEEEEEEEECCCEEEEEEECCCCCCCCHHHHCCCCCEECCCCCCCCCEEEEEEECCCCC
T ss_conf 55877999215357506189999999998479817999956757755645622442100011477882279999717888
Q ss_pred CCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHH
Q ss_conf 635430453898897778998278845513213678867880899977880899983-687999873
Q T0515 298 GDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQS 363 (365)
Q Consensus 298 ~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~ 363 (365)
+|+|+++..+|++++||+|+|.|+|||+++|+|+||++|+|++|+++ ||++++||| ||+||+.++
T Consensus 351 ~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~-~g~~~lir~ret~ed~~~~ 416 (420)
T 2p3e_A 351 GDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE-NGSVKLIRKRENYDYIVEP 416 (420)
T ss_dssp TCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEE-TTEEEEEECCCCHHHHHGG
T ss_pred CCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHH
T ss_conf 88890466378899999999869673246563745489998589998-9979999768999999863
No 2
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=0 Score=563.34 Aligned_cols=361 Identities=17% Similarity=0.195 Sum_probs=309.9
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf 888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV 79 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~ 79 (365)
-||||||||++.|++|+++|+++|+..+.+++||+||||++.|++.+.+.|+|+||+|++|+++|++.| +.++++++|
T Consensus 31 ~gTP~yv~d~~~l~~n~~~l~~a~~~~~~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~g~ 110 (425)
T 2qgh_A 31 HKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGV 110 (425)
T ss_dssp CCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHCEECCC
T ss_conf 49988997699999999999985799997599998428999999999984995998299999999975998001332155
Q ss_pred CCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHH--
Q ss_conf 7886689999972880-021898999999997258----871131156777455434466788710131489999997--
Q T0515 80 AYGDNEIDEVVSHADK-IIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV-- 152 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~----~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~-- 152 (365)
.|++++++.++..++. +++||++|+++|.+.++. .++++|+||.+....+....+++..+|||++..+..+..
T Consensus 111 ~k~~~~i~~a~~~~v~~~~~ds~~el~~l~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfG~~~~~~~~~~~~ 190 (425)
T 2qgh_A 111 GKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLW 190 (425)
T ss_dssp TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 47789999987503246663031157899999886299727999983688756675504676557577116788899875
Q ss_pred -----HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf -----36904899850678767799999999999999---98445651665047778988897---88999999999861
Q T0515 153 -----MDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDDY---PVDAFSARLRAFSD 221 (365)
Q Consensus 153 -----~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~~---~~~~~~~~i~~~~~ 221 (365)
.+++.|+|||+|||+.+++.|.++++.+.+.+ ...+..+++||+||||+.+|... +.......+.....
T Consensus 191 ~~~~~~l~~~GlhfH~gS~~~~~~~~~~ai~~~~~~~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (425)
T 2qgh_A 191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQ 270 (425)
T ss_dssp HHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHHHTT
T ss_pred HHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 44115347889997478776760778999988899999999838987534546866778876430248999999999861
Q ss_pred CCCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC----CCCCCCEEEEEEECCCC
Q ss_conf 2660899971620010550899999974047-746999826543102420102453233----77999437999706668
Q T0515 222 RYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV----LPNEGSHSYMICGKSCL 296 (365)
Q Consensus 222 ~~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~G~~C~ 296 (365)
..++++++|||||+|++||+|+|+|+++|.. +++|+++|+|+++.+...++....+.. ...++..+++|+||||+
T Consensus 271 ~~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~~~~~ivD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GptC~ 350 (425)
T 2qgh_A 271 GLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKGREISPCDVVGPVCE 350 (425)
T ss_dssp TCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECSCC---CCEEEEEECSSSS
T ss_pred CCCCEEEEEECCEEEECCCEEEEEEEEEEECCCCEEEEECCCHHCCCCHHHCCCCCCEEECCCCCCCCCEEEEEECCCCC
T ss_conf 45753674001278633608999999997429925999877410246745505654226513567888407999904877
Q ss_pred CCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHH
Q ss_conf 7635430453898897778998278845513213678867880899977880899983-687999873
Q T0515 297 AGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQS 363 (365)
Q Consensus 297 ~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~ 363 (365)
++|+|++++.||+|++||+|+|.|+|||+++|+|+||++|+|++|+++ ||++++||| ||+||++++
T Consensus 351 ~~D~l~~~~~LP~l~~GD~l~f~~~GAYt~~~~s~FN~~p~p~~v~~~-~g~~~~ir~ret~ed~~~~ 417 (425)
T 2qgh_A 351 SSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE-DHKIRVIRKREALEDLWRL 417 (425)
T ss_dssp TTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEEC-C-CEEEEECCCCGGGGTGG
T ss_pred CCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEEE-CCEEEEEECCCCHHHHHHH
T ss_conf 778886366478999999999949751126453755489998399998-9979999768999999970
No 3
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=0 Score=556.73 Aligned_cols=354 Identities=18% Similarity=0.223 Sum_probs=298.9
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf 88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA 80 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~ 80 (365)
+|||||||++.|++++++|+++| |+++++||+||||++.||+.+++.|+|+||+|.+|+++|+++| +++++|++|+
T Consensus 47 ~~pfyv~D~~~i~~~~~~~~~~l--p~v~~~YAvKaN~~~~vl~~l~~~G~G~DvaS~gEl~~al~~G~~~~~Iif~gp~ 124 (471)
T 2oo0_A 47 KDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPC 124 (471)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 98879968999999999999868--9986887741089899999999849939983999999999769894529997998
Q ss_pred CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHH
Q ss_conf 886689999972880-02189899999999725887113115677745543446678871013148999------99973
Q T0515 81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERVM 153 (365)
Q Consensus 81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~~ 153 (365)
|++++|+.|+++|+. +++||++||++|.+..++.++.+|++++... .+++..+|||++..+. +...+
T Consensus 125 K~~~ei~~A~~~gv~~i~~dS~~EL~~i~~~~~~~~v~lRi~~~~~~------~~~~~~~KFG~~~~~~~~~~~~~~~~~ 198 (471)
T 2oo0_A 125 KQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSK------AVCRLSVKFGATLRTSRLLLERAKELN 198 (471)
T ss_dssp CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEECCCCTT------SSBCCTTTSCBCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999998599699967999999999750147633435678655------421146774424899999999887559
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHC-----CC
Q ss_conf 6904899850678767799999999999999---9844565166504777898889-7889999999998612-----66
Q T0515 154 DRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDR-----YG 224 (365)
Q Consensus 154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~-----~~ 224 (365)
+++.|||||+|||+.+++.|.++++.+..++ .+.+.++++||+|||||++|+. .+++.++..+....++ .+
T Consensus 199 l~l~GlH~HiGSq~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 278 (471)
T 2oo0_A 199 IDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSG 278 (471)
T ss_dssp CEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCSSSSSSSCHHHHHHHHHHHHHHHSCGGGT
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 60899999828865630789999998888999998609763210246775666667778889999998877652135788
Q ss_pred EEEEEECCCEEEECCEEEEEEEEEECCC---------------CCEEEEECCCCCCCCCCHHCCCCCCC-C-----CCCC
Q ss_conf 0899971620010550899999974047---------------74699982654310242010245323-3-----7799
Q T0515 225 VQIYLEPGEASITKSTTLEVTVLDTLYN---------------GKNLAIVDSSIEAHMLDLLIYRETAK-V-----LPNE 283 (365)
Q Consensus 225 ~~l~~EpGR~lva~ag~lit~V~~~k~~---------------~~~~~i~d~g~~~~~~~~~~~~~~~~-~-----~~~~ 283 (365)
+++++|||||+|++||+|+|+|+++|.. ...++++|+|+++.+.+.++...+.. . .+++
T Consensus 279 ~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~g~~~~~~~~~~~~~~~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~ 358 (471)
T 2oo0_A 279 VRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDE 358 (471)
T ss_dssp CEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCTTC
T ss_pred CEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 46997447078641079999999999731311344444446674489998876665345676522652355437878778
Q ss_pred CCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHH
Q ss_conf 94379997066687635430453898897778998278845513213678867880899977880899983687999873
Q T0515 284 GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQS 363 (365)
Q Consensus 284 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~ 363 (365)
+.++++|+||||+++|+|++++.||++++||+|+|.++|||+++|+|+||++|+|++|++++++.+++|||+++.|+...
T Consensus 359 ~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~l~i~~~GAY~~s~ss~fN~~~~P~~v~v~~g~~~~lirr~e~~d~~~~ 438 (471)
T 2oo0_A 359 KYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFPPE 438 (471)
T ss_dssp CEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHHHHCC------
T ss_pred CEEEEEEEECCCCCCCEEEECEECCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHH
T ss_conf 77689999227688878944407789998999999388763376557777999980899983884799960778766276
Q ss_pred C
Q ss_conf 4
Q T0515 364 L 364 (365)
Q Consensus 364 ~ 364 (365)
|
T Consensus 439 ~ 439 (471)
T 2oo0_A 439 V 439 (471)
T ss_dssp -
T ss_pred H
T ss_conf 5
No 4
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=0 Score=557.41 Aligned_cols=348 Identities=19% Similarity=0.253 Sum_probs=297.8
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf 88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA 80 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~ 80 (365)
||||||||++.|++|+++|+++|+ +++++||+|||+++.||++++++|+|+||+|++|+++|+++| ++++++++|+
T Consensus 37 gtP~yv~d~~~i~~~~~~~~~~lp--~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~aG~~~~~Ii~~gp~ 114 (425)
T 1f3t_A 37 GDPFFVADLGDIVRKHETWKKCLP--RVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPC 114 (425)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 983799589999999999998689--988888852489899999999839959962999999999869890429994798
Q ss_pred CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHH
Q ss_conf 886689999972880-02189899999999725887113115677745543446678871013148999------99973
Q T0515 81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERVM 153 (365)
Q Consensus 81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~~ 153 (365)
|++++|+.|+++|+. +++||++||+++.+..++.++.+|++|..... +++..+|||++..+. +...+
T Consensus 115 Ks~~el~~A~~~gv~~i~~Ds~~eL~~i~~~~~~~~v~~Ri~~~~~~~------~~~~~sKFGi~~~~~~~~l~~~~~~~ 188 (425)
T 1f3t_A 115 KQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLA------RCRLSVKFGAKVEDCRFILEQAKKLN 188 (425)
T ss_dssp CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------------CCSCBCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999999987999999678899999998678997279961467667------68788888987999999999998669
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHH---HHHHHCCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCC-----C
Q ss_conf 69048998506787677999999999999---999844565166504777898889-78899999999986126-----6
Q T0515 154 DRINGFMIHNNCENKDFGLFDRMLGEIEE---RFGALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDRY-----G 224 (365)
Q Consensus 154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~~~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~~-----~ 224 (365)
.++.|+|||+|||+.+.+.|.++++.+.. ...+++.++++||+||||++.|++ .+++.+++.+++.+++. +
T Consensus 189 l~l~GlH~H~GS~~~~~~~~~~~i~~~~~l~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 268 (425)
T 1f3t_A 189 IDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLK 268 (425)
T ss_dssp CEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHHSCCCTT
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 83899863267677797999999999999999999819974068645776777889999999999999999986154679
Q ss_pred EEEEEECCCEEEECCEEEEEEEEEECCC-CCE--------------EEEECCCCCCCCCCHHCCCCCCC------CCCCC
Q ss_conf 0899971620010550899999974047-746--------------99982654310242010245323------37799
Q T0515 225 VQIYLEPGEASITKSTTLEVTVLDTLYN-GKN--------------LAIVDSSIEAHMLDLLIYRETAK------VLPNE 283 (365)
Q Consensus 225 ~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~--------------~~i~d~g~~~~~~~~~~~~~~~~------~~~~~ 283 (365)
++|++|||||++++||+|+|+|+++|.+ +.+ ++.+++|++..+.+.+....... ..+++
T Consensus 269 ~~l~~EPGR~lva~ag~lvt~V~~~K~~~g~~~~i~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (425)
T 1f3t_A 269 LTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNE 348 (425)
T ss_dssp CEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGGHHHHSCCCCCCEECSCCCTTC
T ss_pred CEEEEECCCCEEECEEEEEEEEEEEEECCCCEEEEECCCCCCCCCEEEEECCHHCCCHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 68999046415623389999999999538815775124445765328996701036567777313430013566888888
Q ss_pred CCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHH
Q ss_conf 94379997066687635430453898897778998278845513213678867880899977880899983-6879
Q T0515 284 GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYA 358 (365)
Q Consensus 284 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~ 358 (365)
..++++|+||+|+++|+|++++.||++++||+|+|+|+|||+++|+|+||++|+|++|++++++..++||| ||+|
T Consensus 349 ~~~~~~I~G~~C~~~D~l~~~~~LP~l~~GD~l~~~~~GAY~~s~ss~fn~~~~P~~v~v~~g~~~~~iR~ret~e 424 (425)
T 1f3t_A 349 KLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKSQK 424 (425)
T ss_dssp CEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEECCSCSTTHHHHHCC--
T ss_pred CEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf 7778999951888874994776988999999998728561037664766699998199999698079997466767
No 5
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=0 Score=545.16 Aligned_cols=353 Identities=18% Similarity=0.247 Sum_probs=298.6
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCC------CCCEE
Q ss_conf 885678558999999999999972179879872021589899999998088267728899999997079------87277
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFG------KETHA 76 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~~------~~~i~ 76 (365)
||||||||++.|++|+++++++ .+++||+|||+++.|++++++.|+||||+|.+|+++|+++|. +++++
T Consensus 25 GTP~yv~d~~~i~~~~~~l~~~-----~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~~~~~Ii~ 99 (425)
T 1knw_A 25 GCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVF 99 (425)
T ss_dssp CSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEE
T ss_pred CCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9998998799999999985266-----98999961078999999999839988998999999999869996677330797
Q ss_pred ECCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHH------HHHH
Q ss_conf 0477886689999972880021898999999997258871131156777455434466788710131489------9999
Q T0515 77 YSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV------PKVE 150 (365)
Q Consensus 77 ~~~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~------~~~~ 150 (365)
++|+|+.++++.+++.|+.+++||++|++++.+.++..++.+|++++++...+....+++..+|||.... ..+.
T Consensus 100 ~~p~k~~~~i~~a~~~g~~i~~ds~~el~~l~~~~~~~~i~lRi~~~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~~ 179 (425)
T 1knw_A 100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ 179 (425)
T ss_dssp EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTTCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47754699998666415201001478999997535667442113788664421123567776545324034467888887
Q ss_pred HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC----CCHHHHHHHHHHHHH----C
Q ss_conf 97369048998506787677999999999999999844565166504777898889----788999999999861----2
Q T0515 151 RVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAFSD----R 222 (365)
Q Consensus 151 ~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~----~ 222 (365)
..+.++.|+|||+|||+.+.+.+. .+..+.+.+.+.+.++++||+|||||++|.+ .+.+.+...+....+ .
T Consensus 180 ~~~l~~~GlhfHvgS~~~~~~~~~-~~~~~~~~~~~~g~~l~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (425)
T 1knw_A 180 RHHLQLVGIHMHIGSGVDYAHLEQ-VCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARH 258 (425)
T ss_dssp HTTCEEEEEECCCCCTTCHHHHHH-HHHHHHHHHHHHTCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEEEEEECCCCCCHHHHHH-HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 569179888884277532678999-9998877654048146665215774657787777889899988888888876641
Q ss_pred --CCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC---------CCCCCCEEEEE
Q ss_conf --660899971620010550899999974047-746999826543102420102453233---------77999437999
Q T0515 223 --YGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV---------LPNEGSHSYMI 290 (365)
Q Consensus 223 --~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i 290 (365)
.+++|++|||||+|++||+++|+|+++|++ ++.|+++|+|+++++...+ +...+.. ....+..+++|
T Consensus 259 ~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~v 337 (425)
T 1knw_A 259 LGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAM-YGSYHHISALAADGRSLEHAPTVETVV 337 (425)
T ss_dssp HTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHH-HCCCCCEEEECTTCCCCTTCCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHH-CCCCCCEEEECCCCCCCCCCCCEEEEE
T ss_conf 3652499843742201144379999989970697468997751256667566-376441256415765444689538999
Q ss_pred EECCCCCCCEEECC-------CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHH
Q ss_conf 70666876354304-------53898897778998278845513213678867880899977880899983-68799987
Q T0515 291 CGKSCLAGDVFGEF-------RFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQ 362 (365)
Q Consensus 291 ~G~~C~~~D~~~~~-------~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~ 362 (365)
+||||+++|+|+++ +.||++++||||+|.|+||||++|+|+||++|+|++|+++ ||++++||| ||+||+++
T Consensus 338 ~GptC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~FN~~p~p~~v~~~-~g~~~~ir~ret~~d~~~ 416 (425)
T 1knw_A 338 AGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELLA 416 (425)
T ss_dssp ECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECCCCHHHHHT
T ss_pred EECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHH
T ss_conf 9268778707863566653335478899999999959763148653776799988689999-998999978899999972
Q ss_pred H
Q ss_conf 3
Q T0515 363 S 363 (365)
Q Consensus 363 ~ 363 (365)
+
T Consensus 417 ~ 417 (425)
T 1knw_A 417 L 417 (425)
T ss_dssp T
T ss_pred C
T ss_conf 1
No 6
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=0 Score=546.50 Aligned_cols=361 Identities=18% Similarity=0.185 Sum_probs=303.2
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCC
Q ss_conf 88856785589999999999999721------7987987202158989999999808826772889999999707--987
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREK------SGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKE 73 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~------~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~ 73 (365)
.|||+||||++.|++|+++++++|+. .+++++||+|||+++.||+++++.|+|+||+|.+|+++|++.| +++
T Consensus 28 ~GTP~yV~d~~~i~~n~~~l~~af~~~~~~~g~~~~v~YAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~ 107 (434)
T 1twi_A 28 FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKK 107 (434)
T ss_dssp HCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGG
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCC
T ss_conf 69988998799999999999998877676238864999986348989999999983998499789999987531257422
Q ss_pred CEEECCCCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHC----CCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHH-
Q ss_conf 2770477886689999972880-02189899999999725----88711311567774554344667887101314899-
Q T0515 74 THAYSVAYGDNEIDEVVSHADK-IIFNSISQLERFADKAA----GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVP- 147 (365)
Q Consensus 74 ~i~~~~~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~----~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~- 147 (365)
+++++|+|++++++.|++.|+. +++||++|++++.+.++ ..++++|+||..+.+.+....+++..+|||....+
T Consensus 108 Ii~~gp~K~~~~l~~A~~~gv~~~~~ds~~el~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfG~~~~~~ 187 (434)
T 1twi_A 108 IVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESG 187 (434)
T ss_dssp EEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTS
T ss_pred CCCCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCHH
T ss_conf 34556643066666787678603322203566666667887099855012214676756663242254222456530013
Q ss_pred ----HHHH----HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCCC----CHHHH
Q ss_conf ----9999----736904899850678767799999999999999---98445651665047778988897----88999
Q T0515 148 ----KVER----VMDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDDY----PVDAF 212 (365)
Q Consensus 148 ----~~~~----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~~----~~~~~ 212 (365)
.... .+.++.|+|||+|||+.+++.|.++++.+.+++ .+.+.++++||+||||+++|... +...+
T Consensus 188 ~~~~~~~~~~~~~~l~~~GlhfHvgS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~ 267 (434)
T 1twi_A 188 IAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQKDL 267 (434)
T ss_dssp HHHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECCCCBCCCSSSSSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 67899999887413655562033301224430689999999999999998399804764036666432356532102443
Q ss_pred HHHHHHHHH-----CCCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC--CCCCC
Q ss_conf 999999861-----2660899971620010550899999974047-746999826543102420102453233--77999
Q T0515 213 SARLRAFSD-----RYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV--LPNEG 284 (365)
Q Consensus 213 ~~~i~~~~~-----~~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~--~~~~~ 284 (365)
...+..... ..+++|++|||||++++||+++|+|+++|.+ +..|+++|+|+++.+.+.+.....+.. ...+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~ 347 (434)
T 1twi_A 268 ADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKNE 347 (434)
T ss_dssp HHHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCCCEEESBCCSC
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCCEEEECCCCC
T ss_conf 10123322211024677569833872132144230578998522587626997134678775302000110022026899
Q ss_pred CEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHH
Q ss_conf 4379997066687635430453898897778998278845513213678867880899977880899983-687999873
Q T0515 285 SHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQS 363 (365)
Q Consensus 285 ~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~ 363 (365)
..+++|+||||+++|+|++++.+|++++||+|+|.|+|||+++|+|+||++|+|++|+++ ++++++||+ +|+||++++
T Consensus 348 ~~~~~i~G~tC~s~D~l~~~~~lp~l~~GD~l~f~~~GAY~~~~~s~FN~~~~p~~v~v~-~~~~~~ir~~~t~ed~~~~ 426 (434)
T 1twi_A 348 KEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS-KKGVFLIRERETYADLIAK 426 (434)
T ss_dssp EEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCHHHHTTT
T ss_pred CCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHC
T ss_conf 617999944888976899453068899899999949850438464766799988299998-9908999768999999746
No 7
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=0 Score=548.26 Aligned_cols=347 Identities=18% Similarity=0.200 Sum_probs=296.9
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf 888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV 79 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~ 79 (365)
.+|||||||++.|++|+++|+++| |+++++||+||||++.||+.+++.|+|+||+|++|+++|+++| ++++++++|
T Consensus 36 ~~~pfyv~d~~~i~~~~~~~~~~l--p~v~~~YAvKaN~~~~il~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp 113 (424)
T 7odc_A 36 DKDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANP 113 (424)
T ss_dssp CCCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCS
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 998689947999999999999868--998688885138989999999984997899789999999974959363999899
Q ss_pred CCCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHH
Q ss_conf 788668999997288-002189899999999725887113115677745543446678871013148999------9997
Q T0515 80 AYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERV 152 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~ 152 (365)
+|++++|+.|++.|+ .+++||++||+++.+..++.++.+|++++... .+++..+|||++..+. +...
T Consensus 114 ~K~~~~i~~A~~~gv~~i~~ds~~EL~~i~~~~~~~~v~~Ri~~~~~~------~~~~~~skFG~~~~~~~~~~~~~~~~ 187 (424)
T 7odc_A 114 CKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSK------AVCRLSVKFGATLKTSRLLLERAKEL 187 (424)
T ss_dssp SCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------------CCCBCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999998599679967999999999765557763354058643------44566678885689999999998756
Q ss_pred HCCCEEEEEEECCCCCCHHHHHHHHHHHHH---HHHHHCCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHC-----C
Q ss_conf 369048998506787677999999999999---999844565166504777898889-7889999999998612-----6
Q T0515 153 MDRINGFMIHNNCENKDFGLFDRMLGEIEE---RFGALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDR-----Y 223 (365)
Q Consensus 153 ~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~~~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~-----~ 223 (365)
..++.|+|||+|||+.+++.|.++++.+.. .+.+.+.++++||+||||+++|+. .+++.+++.+++..++ .
T Consensus 188 ~l~l~Glh~HvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 267 (424)
T 7odc_A 188 NIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDS 267 (424)
T ss_dssp TCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCGGG
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 98588999985887762577898888899999998752477635760787566766778989975554344665302478
Q ss_pred CEEEEEECCCEEEECCEEEEEEEEEECCCC---------------CEEEEECCCCCCCCCCHHCCCCCCCC-------CC
Q ss_conf 608999716200105508999999740477---------------46999826543102420102453233-------77
Q T0515 224 GVQIYLEPGEASITKSTTLEVTVLDTLYNG---------------KNLAIVDSSIEAHMLDLLIYRETAKV-------LP 281 (365)
Q Consensus 224 ~~~l~~EpGR~lva~ag~lit~V~~~k~~~---------------~~~~i~d~g~~~~~~~~~~~~~~~~~-------~~ 281 (365)
++++++|||||+|++||+|+|+|+++|... ..++++|+|+++.+. +.++...+.. .+
T Consensus 268 ~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~~vd~g~~~~~~-~~l~~~~~~~~~~~~~~~~ 346 (424)
T 7odc_A 268 GVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFN-CILYDHAHVKALLQKRPKP 346 (424)
T ss_dssp TCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTH-HHHHSCCCCCCEESSCCCT
T ss_pred CCEEEECCCHHHHHHCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHH-HHHHCCCCEEEEECCCCCC
T ss_conf 966996386450232428999999999842422343454345662589998755466777-7774036504654468888
Q ss_pred CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCH
Q ss_conf 9994379997066687635430453898897778998278845513213678867880899977880899983-687
Q T0515 282 NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTY 357 (365)
Q Consensus 282 ~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~ 357 (365)
.++.++++|+||||+++|+|++++.||++++||+|+|.++|||+++|+|+||++|+|++|++.+++.+++||| +||
T Consensus 347 ~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~P~~v~v~~~~~~~lir~~et~ 423 (424)
T 7odc_A 347 DEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQIQSH 423 (424)
T ss_dssp TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHC-----
T ss_pred CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCC
T ss_conf 78777899997286887688645477899999999993988512655365679999858999978966999835679
No 8
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=0 Score=546.63 Aligned_cols=360 Identities=18% Similarity=0.195 Sum_probs=302.4
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf 888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV 79 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~ 79 (365)
.|||+||||++.|++|+++++++|+ ++++++||+|||+++.|++.+.++|+|+||+|.+|+++|++.| ++++++++|
T Consensus 40 ~GTP~yV~d~~~i~~n~~~l~~a~~-~~~~i~YAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~Ii~~gp 118 (467)
T 2o0t_A 40 YGTPLFVIDEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGN 118 (467)
T ss_dssp HCSSEEEEEHHHHHHHHHHHHHHTS-SGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCT
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 6999899889999999999998558-998799987548989999999981997999899999999974989662998289
Q ss_pred CCCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHH-----HH
Q ss_conf 788668999997288-0021898999999997258----8711311567774554344667887101314899-----99
Q T0515 80 AYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVP-----KV 149 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~----~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~-----~~ 149 (365)
+|++++++.|+..++ .+++||++|++++.+.++. ..+++|++|++....+....+++..+|||+...+ ..
T Consensus 119 ~k~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~i~lrl~~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~ 198 (467)
T 2o0t_A 119 NKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAV 198 (467)
T ss_dssp TCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 89999999988625517886778999999998776298742222026886555542223576544567540135789999
Q ss_pred ----HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH--------HHHCCCCCEEEECCCCCCCCCC----CCHHHHH
Q ss_conf ----99736904899850678767799999999999999--------9844565166504777898889----7889999
Q T0515 150 ----ERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERF--------GALIARVDWVSLGGGIHFTGDD----YPVDAFS 213 (365)
Q Consensus 150 ----~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~idiGGG~~~~~~~----~~~~~~~ 213 (365)
.....++.|+|||+|||+.+++.|.+++..+.+++ .+.+.+++++|+||||+.+|.. .+++.++
T Consensus 199 ~~~~~~~~~~l~Glh~H~gS~~~d~~~~~~a~~~~~~l~~~~~~~~~~~~~~~l~~ld~GGG~~~~~~~~~~~~~~~~~~ 278 (467)
T 2o0t_A 199 RRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELA 278 (467)
T ss_dssp HHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCCCHHHHH
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 99973669847889985288877708899999999998888998655650766331034078676777777776378899
Q ss_pred HHHHHHHHC-------CCEEEEEECCCEEEECCEEEEEEEEEECC------CCCEEEEECCCCCCCCCCHHCCCCCCCC-
Q ss_conf 999998612-------66089997162001055089999997404------7746999826543102420102453233-
Q T0515 214 ARLRAFSDR-------YGVQIYLEPGEASITKSTTLEVTVLDTLY------NGKNLAIVDSSIEAHMLDLLIYRETAKV- 279 (365)
Q Consensus 214 ~~i~~~~~~-------~~~~l~~EpGR~lva~ag~lit~V~~~k~------~~~~~~i~d~g~~~~~~~~~~~~~~~~~- 279 (365)
+.+....++ .+++|++|||||+|++||+|+|+|+.+|+ .+++|+++|+|+++++...+....++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~EPGR~lv~~ag~lvt~V~~~k~~~~k~~~~~~~v~~D~g~~~~~~~~~~~~~~~i~~ 358 (467)
T 2o0t_A 279 AKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRL 358 (467)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCCTTTCCHHHHHCCCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEE
T ss_conf 99999999875320566751899557266236403899999987411223386589998765545667566077463485
Q ss_pred ---CCCCCCEEEEEEECCCCCCCEEECCCCCC-CCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-
Q ss_conf ---77999437999706668763543045389-8897778998278845513213678867880899977880899983-
Q T0515 280 ---LPNEGSHSYMICGKSCLAGDVFGEFRFAE-ELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE- 354 (365)
Q Consensus 280 ---~~~~~~~~~~i~G~~C~~~D~~~~~~~lp-~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~- 354 (365)
.++++.++++|+||||+++|+|++++.+| +|++||+|+|.|+|||+++|+|+||++|+|++|+++ ||++++|||
T Consensus 359 ~~~~~~~~~~~~~v~GptC~s~D~l~~~~~lP~~l~~GD~l~~~~~GAY~~s~ss~fN~~~~P~~v~i~-~g~~~lirrr 437 (467)
T 2o0t_A 359 VSRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH-AGNARLVLRR 437 (467)
T ss_dssp CSSCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEEEEE-TTEEEEEECC
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECC
T ss_conf 257788975799999718898779904544788899999999859213257774726699998389999-9969999888
Q ss_pred CCHHHHHHH
Q ss_conf 687999873
Q T0515 355 FTYADYEQS 363 (365)
Q Consensus 355 ~~~~d~~~~ 363 (365)
||+||++.+
T Consensus 438 et~ed~~~~ 446 (467)
T 2o0t_A 438 ETVDDLLSL 446 (467)
T ss_dssp CCHHHHHTT
T ss_pred CCHHHHHHH
T ss_conf 999999853
No 9
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=0 Score=551.15 Aligned_cols=351 Identities=17% Similarity=0.185 Sum_probs=292.9
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf 88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA 80 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~ 80 (365)
+|||||||++.|++|+++|+++| |+++++||||||+++.||+.+++.|+|+||+|.+|+++|+++| +++++|++|+
T Consensus 37 ~~pfyv~dl~~i~~~~~~~~~~l--p~v~~~YAvKaN~~~~vl~~l~~~G~G~DvaS~~El~~al~~G~~~~~Iif~gp~ 114 (448)
T 3btn_A 37 KNAFFVGDLGKIVKKHSQWQTVV--AQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPC 114 (448)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEESSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99779926999999999999878--9986887731189899999999839949996999999999769795749999999
Q ss_pred CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHH
Q ss_conf 886689999972880-02189899999999725887113115677745543446678871013148999------99973
Q T0515 81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERVM 153 (365)
Q Consensus 81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~~ 153 (365)
|++++|+.|++.|+. +++||++||++|.+..++.++.+||+++..... ....+|||++..+. +...+
T Consensus 115 Ks~~~i~~A~~~Gv~~~~vDs~~EL~~i~~~~~~~~v~lRI~~~~~~~~------~~~~sKFGi~~~~~~~~l~~~~~~~ 188 (448)
T 3btn_A 115 KQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATEDNIGG------EDGNMKFGTTLKNCRHLLECAKELD 188 (448)
T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCC--------------CCCCBCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999999879949998999999999976899963898614666777------7677767889999999999997679
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-----CCE
Q ss_conf 690489985067876779999999999999---998445651665047778988897889999999998612-----660
Q T0515 154 DRINGFMIHNNCENKDFGLFDRMLGEIEER---FGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDR-----YGV 225 (365)
Q Consensus 154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~---~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~-----~~~ 225 (365)
.++.|+|||+|||+.+++.|.++++.+..+ ..+.+.++++||+||||+.+|. +.+++++.+++.+++ .++
T Consensus 189 l~l~GlH~HvGS~~~~~~~~~~ai~~~~~~~~~~~~~g~~l~~iDiGGGf~~~~~--~~e~~~~~i~~~l~~~~~~~~~~ 266 (448)
T 3btn_A 189 VQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTEI--QLEEVNHVISPLLDIYFPEGSGI 266 (448)
T ss_dssp CEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCSCHH--HHHHHHHHHHHHHHHHSCTTSCC
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8786743204767577799999999999999999975995305523786787888--76778999999998641226897
Q ss_pred EEEEECCCEEEECCEEEEEEEEEECCCC-CE---------------EEEECCCCCCCCCCHHCCCCCCC--C----CCCC
Q ss_conf 8999716200105508999999740477-46---------------99982654310242010245323--3----7799
Q T0515 226 QIYLEPGEASITKSTTLEVTVLDTLYNG-KN---------------LAIVDSSIEAHMLDLLIYRETAK--V----LPNE 283 (365)
Q Consensus 226 ~l~~EpGR~lva~ag~lit~V~~~k~~~-~~---------------~~i~d~g~~~~~~~~~~~~~~~~--~----~~~~ 283 (365)
+|++|||||+|++||+|+|+|+++|+.. .+ ++.++.|++..+...+....... . .+++
T Consensus 267 ~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~v~~~g~~~~~~~~~i~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (448)
T 3btn_A 267 QIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDE 346 (448)
T ss_dssp EEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEEEEESCCTTTTTGGGGC----CCCEECCC-----
T ss_pred EEEECCCCEEEECEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 59965986042020899999999997268614666503676661102464212330478887641355655455666788
Q ss_pred CCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHH
Q ss_conf 94379997066687635430453898897778998278845513213678867880899977880899983-68799987
Q T0515 284 GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQ 362 (365)
Q Consensus 284 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~ 362 (365)
+.++++|+||||+++|+|++++.||++++||||+|+|+|||+++|+|+||++|+|++|++.+++.+++||+ ++++|..-
T Consensus 347 ~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~L~~~~~GAY~~s~ss~fNg~~~Pa~v~v~~~~~~~~i~~~~~~~d~~~ 426 (448)
T 3btn_A 347 PLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQDAGITSDAMM 426 (448)
T ss_dssp CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCCGGGTTCCCEEEEEEEHHHHHHHHHTTGGGSGGG
T ss_pred CEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHCCCCCCCCCCEEEEEEECCEEEEEECCCCCHHHHH
T ss_conf 75789999528788778917969989999999988597703132318988999870899990871033101685278897
Q ss_pred H
Q ss_conf 3
Q T0515 363 S 363 (365)
Q Consensus 363 ~ 363 (365)
+
T Consensus 427 ~ 427 (448)
T 3btn_A 427 K 427 (448)
T ss_dssp T
T ss_pred H
T ss_conf 2
No 10
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=100.00 E-value=0 Score=537.74 Aligned_cols=342 Identities=17% Similarity=0.169 Sum_probs=293.6
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf 88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA 80 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~ 80 (365)
||||||||++.|++|+++|+++|+ +++++||+|||+++.|++.+.++|+|+||+|++|+++|+++| ++++++++|+
T Consensus 54 GTP~yV~d~~~l~~n~~~~~~~~~--~~~i~YAvKAN~~~~il~~l~~~G~g~dv~S~~El~~al~aG~~~~~Ii~~gp~ 131 (419)
T 2plj_A 54 GAPLLLLDCDVIRQQYRALKNALP--NVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTHPI 131 (419)
T ss_dssp CSSEEEEEHHHHHHHHHHHHHHST--TEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 998899899999999999998689--988999963288899999999839988998999999999759690218989998
Q ss_pred CCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHH------HHHHHH
Q ss_conf 88668999997288-00218989999999972588711311567774554344667887101314899------999973
Q T0515 81 YGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVP------KVERVM 153 (365)
Q Consensus 81 k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~------~~~~~~ 153 (365)
|++++|+.|+++|+ .+++||++|++++.+.+++.++.+|++++..... +...+|||++..+ .++..+
T Consensus 132 Ks~~el~~al~~gv~~i~vDs~~El~~l~~~a~~~~~~iri~~r~~~~~------~~~~~kfG~~~~~~~~~~~~~~~~~ 205 (419)
T 2plj_A 132 KRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNSEAF------ADLSKKFGCSPEQALVIIETAKEWN 205 (419)
T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC---------------CCCSCBCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCC------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8847699999739846740328899999975522505887752256333------4346887779899999999998679
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH----HHCCCCCEEEECCCCCCCCCC--CCHHHHHHHHHHHHHCC--CE
Q ss_conf 69048998506787677999999999999999----844565166504777898889--78899999999986126--60
Q T0515 154 DRINGFMIHNNCENKDFGLFDRMLGEIEERFG----ALIARVDWVSLGGGIHFTGDD--YPVDAFSARLRAFSDRY--GV 225 (365)
Q Consensus 154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~----~~~~~~~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~--~~ 225 (365)
.++.|+|||+|||+.+.+.|.++++.+.+.+. +.+.++++||+||||+++|.+ .+++.+++.+.+..+.. ++
T Consensus 206 l~~~Gih~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (419)
T 2plj_A 206 IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETV 285 (419)
T ss_dssp CEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTSCTTC
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 97678888657565775105779999999998766631777535640697674576566775677778888766303660
Q ss_pred EEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCCC---CCCCCEEEEEEECCCCCCCEE
Q ss_conf 899971620010550899999974047-7469998265431024201024532337---799943799970666876354
Q T0515 226 QIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKVL---PNEGSHSYMICGKSCLAGDVF 301 (365)
Q Consensus 226 ~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~G~~C~~~D~~ 301 (365)
+|++|||||+|++||+++++|+++|++ +..|+++|+|+++++.+.++....++.. .++...+++|+||+|+++|+|
T Consensus 286 ~li~EPGR~lva~ag~ll~~V~~~k~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l 365 (419)
T 2plj_A 286 HVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVI 365 (419)
T ss_dssp EEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCCCCCEEESCCSSCEEEEEEECSSSCTTCEE
T ss_pred EEECCCCCEEEECCEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHCCCCCCCEECCCCCCCCCEEEEECCCCCCCCEE
T ss_conf 00058761154051689999999985167258997024123567234136646446457888755599881797863588
Q ss_pred ECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEEC--CCEEEEE
Q ss_conf 30453898897778998278845513213678867880899977--8808999
Q T0515 302 GEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIREL--DGSVRTV 352 (365)
Q Consensus 302 ~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~--dg~~~~i 352 (365)
+++..+|++++||+|+|.|||||+++|+||||++|+|++|++++ +++.|+|
T Consensus 366 ~~~~~lp~l~~GD~L~i~~~GAY~~~~as~fN~~~~p~~V~v~~~~~~~~Rli 418 (419)
T 2plj_A 366 AENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFVASSERMI 418 (419)
T ss_dssp EEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECCCC-------
T ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 84538889999999998897733576628688999880899967887653341
No 11
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=0 Score=534.64 Aligned_cols=359 Identities=17% Similarity=0.186 Sum_probs=298.8
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf 888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV 79 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~ 79 (365)
.|||+||||++.|++|+++++++++ ++++++||+|||+++.|++.++++|+|+||+|++|+++|++.| ++++++++|
T Consensus 15 ~gTP~yv~d~~~i~~n~~~l~~~~~-~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~al~~G~~~~~i~~~gp 93 (428)
T 2j66_A 15 FETPFYLYDGDFIEAHYRQLRSRTN-PAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAGFSAENIIFSGP 93 (428)
T ss_dssp SCSSEEEEEHHHHHHHHHHHHHTSC-TTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCS
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf 1999899889999999999985268-997899987427999999999981991997599999999985999322898788
Q ss_pred CCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHH---
Q ss_conf 7886689999972880-021898999999997258----87113115677745543446678871013148999999---
Q T0515 80 AYGDNEIDEVVSHADK-IIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER--- 151 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~----~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~--- 151 (365)
.|++++++.+++.|+. +++||.+|++++....+. ..+.+|+++..+.. +....+++..+|||.+..+..+.
T Consensus 94 ~k~~~~l~~a~~~gv~~~~~ds~~~~~~i~~~~~~~~~~~~v~~r~~~~~~~~-~~~~~~g~~~~kfg~~~~~~~~~~~~ 172 (428)
T 2j66_A 94 GKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFG-STAIKMGGVPRQFGMDESMLDAVMDA 172 (428)
T ss_dssp CCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC---CCCSSSCCCCSSSEEGGGHHHHHHH
T ss_pred CCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-EEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 66499987776258043126899999999998875398627997327875520-12221266654356420234889987
Q ss_pred ----HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH----HHHCCCCCEEEECCCCCCCCCC----CCHHHHHHHHHHH
Q ss_conf ----736904899850678767799999999999999----9844565166504777898889----7889999999998
Q T0515 152 ----VMDRINGFMIHNNCENKDFGLFDRMLGEIEERF----GALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAF 219 (365)
Q Consensus 152 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~----~~~~~~~~~idiGGG~~~~~~~----~~~~~~~~~i~~~ 219 (365)
...++.|+|||+|||+.+.+.|.++++.+.+.+ .+.+.++++||+||||+++|.+ .+++.+++.+...
T Consensus 173 ~~~~~~~~~~GlH~h~GS~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ldiGGG~~~~~~~~~~~~~~~~~~~~i~~~ 252 (428)
T 2j66_A 173 VRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDY 252 (428)
T ss_dssp HHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--CCCCCHHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 65315662688687378775411569999999999999999964996412123677676643356632078899999999
Q ss_pred HHC------CCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCC--------CC---CCCC
Q ss_conf 612------660899971620010550899999974047-74699982654310242010245--------32---3377
Q T0515 220 SDR------YGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRE--------TA---KVLP 281 (365)
Q Consensus 220 ~~~------~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~--------~~---~~~~ 281 (365)
.++ .+++||+|||||+|++||+|+|+|+++|++ +.+|+++|+|++++..+.+.... .. ...+
T Consensus 253 ~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 2j66_A 253 VQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSG 332 (428)
T ss_dssp HHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-----------CEEEEC------
T ss_pred HHHHHHHCCCCCEEEEECCEEEEHHCCCEEEEEEEEECCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCC
T ss_conf 99877513887469972443360111536789999714798469998450003565243363212233047774037777
Q ss_pred CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHC-CCCCCCCCEEEEEECCCEEEEEEE-CCHHH
Q ss_conf 9994379997066687635430453898897778998278845513213-678867880899977880899983-68799
Q T0515 282 NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN-WFNGVKMPAIAIRELDGSVRTVRE-FTYAD 359 (365)
Q Consensus 282 ~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s-~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d 359 (365)
.+..++++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|++ +||++|+|++|+++ ||++++||| ||+||
T Consensus 333 ~~~~~~~~l~G~tC~~~D~l~~~~~lp~l~~GD~l~f~~~GAY~~s~s~~~fn~~p~p~~vl~~-~g~~~lir~ret~ed 411 (428)
T 2j66_A 333 RRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR-NGSYELIRRKGTADD 411 (428)
T ss_dssp ---CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE-TTEEEEEECCCCHHH
T ss_pred CCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCHHHHHCHHHCCCCCCCEEEEE-CCEEEEEECCCCHHH
T ss_conf 7884179998659997526632554788999999999188631565602122399998099998-998999978898999
Q ss_pred HHHH
Q ss_conf 9873
Q T0515 360 YEQS 363 (365)
Q Consensus 360 ~~~~ 363 (365)
++.+
T Consensus 412 ~~~~ 415 (428)
T 2j66_A 412 IVAT 415 (428)
T ss_dssp HHGG
T ss_pred HHHC
T ss_conf 9855
No 12
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=0 Score=521.99 Aligned_cols=333 Identities=15% Similarity=0.161 Sum_probs=281.4
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf 88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA 80 (365)
Q Consensus 3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~ 80 (365)
+|||||||++.|++|+++|+++|+ +++++||+||||++.||+.++++|+|+||+|++|+++|++.| ++++++++|+
T Consensus 16 ~~~fyv~d~~~i~~~~~~~~~~~p--~v~~~YAvKAN~~~~il~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp~ 93 (372)
T 2nva_A 16 TKSFYVSSPKIVEDLIDQWTILFP--RVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTM 93 (372)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTCCGGGEEECCSC
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 986899709999999999998789--986888852089899999999849829994999999999859994789982897
Q ss_pred CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCH------HHHHHHHH
Q ss_conf 886689999972880-02189899999999725887113115677745543446678871013148------99999973
Q T0515 81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWD------VPKVERVM 153 (365)
Q Consensus 81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~------~~~~~~~~ 153 (365)
|++++|+.|+++|+. +++||++|++++.+..++..+.+|++++..... ++..+|||+.. .+.++...
T Consensus 94 Ks~~el~~a~~~gv~i~~~ds~~el~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~kfg~~~~~~~~~~~~~~~~~ 167 (372)
T 2nva_A 94 KTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNAT------VQLGNKFGANEDEIRHLLEYAKQLD 167 (372)
T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCCTTCS------BCCTTTSSBCGGGHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999999849985897699999988653322222110024676444------6788877766466689999998669
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCCCC-----HHHHHHHHHHHHHCCCE
Q ss_conf 6904899850678767799999999999999---984456516650477789888978-----89999999998612660
Q T0515 154 DRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDDYP-----VDAFSARLRAFSDRYGV 225 (365)
Q Consensus 154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~~~-----~~~~~~~i~~~~~~~~~ 225 (365)
.++.|+|||+|||+.+++.|.++++.+.+.+ .+.+.++++|||||||+++|.+.+ .+.....+.++....++
T Consensus 168 l~~~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (372)
T 2nva_A 168 IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPEDTV 247 (372)
T ss_dssp CCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHHHHHHHHHHHHCCCTTC
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 90899995258655885899999999999999887517874287755864658887767735999998765411365454
Q ss_pred EEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC-----C-CCCCCEEEEEEECCCCCC
Q ss_conf 899971620010550899999974047-746999826543102420102453233-----7-799943799970666876
Q T0515 226 QIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV-----L-PNEGSHSYMICGKSCLAG 298 (365)
Q Consensus 226 ~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~i~G~~C~~~ 298 (365)
+|++|||||+|++||+|+|+|+++|.+ +..++++|+|+++.+.+.+.....+.. . .+++..+++|+||+|+++
T Consensus 248 ~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~ 327 (372)
T 2nva_A 248 TIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTCDGV 327 (372)
T ss_dssp EEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTT
T ss_pred EEECCCCCEECCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCC
T ss_conf 32057401031260599999999997188226873331146554301110366402204678878777899993697815
Q ss_pred CEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 354304538988977789982788455132136788678808999
Q T0515 299 DVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIR 343 (365)
Q Consensus 299 D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~ 343 (365)
|+|++++.||++++||+|+|.|+|||+++|+|||||+|+|+++++
T Consensus 328 D~l~~~~~LP~l~~GD~l~i~~~GAY~~s~ss~fNg~~~p~v~~~ 372 (372)
T 2nva_A 328 DVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372)
T ss_dssp CEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred CEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf 388876417999999999884955223866188889899837969
No 13
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00 E-value=0 Score=510.92 Aligned_cols=360 Identities=15% Similarity=0.149 Sum_probs=308.0
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf 888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV 79 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~ 79 (365)
-|||+||||++.|++|++.++++++.++++++||||||+++.|++.+.++|+||||+|.+|+++++++| ++.+++++|
T Consensus 11 ~gTP~~viD~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~aG~~~~~iv~~gp 90 (386)
T 2yxx_A 11 HGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGN 90 (386)
T ss_dssp HCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCS
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 79988998599999999999974664897799997618859999999984995999489999999976979776996089
Q ss_pred CCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH----HHH
Q ss_conf 7886689999972880-0218989999999972588-711311567774554344667887101314899999----973
Q T0515 80 AYGDNEIDEVVSHADK-IIFNSISQLERFADKAAGI-ARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE----RVM 153 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~-~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~----~~~ 153 (365)
+|++++++.++++++. +++||++|++++.+.++.. .+..|+++..+...+....+++..+|||.+..+..+ ..+
T Consensus 91 ~k~~~~l~~a~~~~~~~~~~ds~~el~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~srfG~~~~~~~~~~~~~~~ 170 (386)
T 2yxx_A 91 GKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS 170 (386)
T ss_dssp CCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHCHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 89999999999839985897699999999995521375268971454444577646677656568869999999996042
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69048998506787677999999999999999844565166504777898889--7889999999998612660899971
Q T0515 154 DRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDD--YPVDAFSARLRAFSDRYGVQIYLEP 231 (365)
Q Consensus 154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~Ep 231 (365)
.++.|+|+|+||+..+.+.|.+++.++.+.... ..++.+|+|||++.+|.+ .+++.+...+.... ...+++++||
T Consensus 171 ~~~~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iggG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ep 247 (386)
T 2yxx_A 171 MNIRGLHVHIGSQITRVEPFVEAFSKVVRASER--YGFEEINIGGGWGINYSGEELDLSSYREKVVPDL-KRFKRVIVEI 247 (386)
T ss_dssp SCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHH--HTCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGG-TTCSEEEEEE
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEECCCC
T ss_conf 577677885355679999999999999998633--4885898678778788866679899999998764-1487030377
Q ss_pred CCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC--CCCCCCEEEEEEECCCCCCCEEECCCCCC
Q ss_conf 620010550899999974047-746999826543102420102453233--77999437999706668763543045389
Q T0515 232 GEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV--LPNEGSHSYMICGKSCLAGDVFGEFRFAE 308 (365)
Q Consensus 232 GR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~G~~C~~~D~~~~~~~lp 308 (365)
||+++++||+++|+|+++|+. ++.++++|+|++........+...+.. ..+++.+++.|+||+|+++|+++.++.+|
T Consensus 248 Gr~l~~~a~~l~t~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp 327 (386)
T 2yxx_A 248 GRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELP 327 (386)
T ss_dssp CHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCCCCSEEEEEECSSSSTTCEEEEEEEES
T ss_pred CCHHHHHHEEEEEEEEEEEEECCEEEEEECCCCCCCCCHHHHCCCCCCEECCCCCCEEEEEEEEECCCCCCEEEECCCCC
T ss_conf 64622610489999999986288179998886545566666345677354178898357999912889988896553579
Q ss_pred CCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHHC
Q ss_conf 8897778998278845513213678867880899977880899983-6879998734
Q T0515 309 ELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQSL 364 (365)
Q Consensus 309 ~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~~ 364 (365)
++++||+|+|+|+|||+++|+|+||++|+|++|++++||++++||| ||+||++...
T Consensus 328 ~l~~GD~l~~~~~GAY~~~~~~~Fn~~~~p~~v~~~~~g~~~~ir~~e~~~d~~~~~ 384 (386)
T 2yxx_A 328 EVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDV 384 (386)
T ss_dssp CCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECCCCHHHHTTTC
T ss_pred CCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHC
T ss_conf 999899999969762236553777689988599996699099998379999997523
No 14
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.93 E-value=5.1e-22 Score=159.12 Aligned_cols=330 Identities=14% Similarity=0.100 Sum_probs=203.6
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCC
Q ss_conf 8885678558999999999999972179879872021589899999998088-267728899999997079872770477
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSVA 80 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~~ 80 (365)
|.||+.|+|++++++|++++++..+..++++...+||++.+.|++.+.++|. |+.|++..|++..++.|.+++++..+.
T Consensus 44 l~tP~lvid~~~l~~N~~~m~~~~~~~g~~~rph~Kthks~~ia~~~l~~Ga~~~~vat~~Ea~~l~~~Gi~~illa~~~ 123 (426)
T 3gwq_A 44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMANQL 123 (426)
T ss_dssp BCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEECSCC
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEECCC
T ss_conf 89974998499999999999998865697499983112789999999977998699865999999997499987883267
Q ss_pred CCHHHHHHHHHC------CCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHH--
Q ss_conf 886689999972------880021898999999997258871131156777455434466788710131489999997--
Q T0515 81 YGDNEIDEVVSH------ADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV-- 152 (365)
Q Consensus 81 k~~~~i~~a~~~------g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~-- 152 (365)
..++.++.+.+. .+.+.+||+++++.+.+.+......++|.+.++.+.++.. .........+++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vD~G~~R~G---v~~~e~~~~l~~~i~~~~~ 200 (426)
T 3gwq_A 124 VGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVPGGRTG---VRDAAQRNAVLEAITRYPD 200 (426)
T ss_dssp CSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCTTSSSS---BCSHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHCC
T ss_conf 8989999999973177934999981899999999988757828999875146864567---6676899999999974337
Q ss_pred HCCCEEEEEEECCCCCCHHHHHHHH----HHHHHHHHHHC--CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 3690489985067876779999999----99999999844--56516650477789888978899999999986126608
Q T0515 153 MDRINGFMIHNNCENKDFGLFDRML----GEIEERFGALI--ARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 226 (365)
Q Consensus 153 ~~~i~Gih~H~gs~~~~~~~~~~~l----~~~~~~~~~~~--~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (365)
+..+.|++.|.|+.. +.....+.. ..+..+..+.. .....+.-||..+ ....+..+..........
T Consensus 201 ~l~l~Gi~~h~g~~~-~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~-------~~~~~~~~~~~~~~~~~~ 272 (426)
T 3gwq_A 201 TLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW-------YDVVAEEFVKASETGKVE 272 (426)
T ss_dssp TEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT-------HHHHHHHTHHHHHSSSEE
T ss_pred CEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC-------CCCCCCCCCCCCCCCCEE
T ss_conf 759999987424447-835499999999999999999751177761354357765-------112121002356776413
Q ss_pred EEEECCCEEEE---------------------------CCEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCCC
Q ss_conf 99971620010---------------------------550899999974047746999826543102420102453233
Q T0515 227 IYLEPGEASIT---------------------------KSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKV 279 (365)
Q Consensus 227 l~~EpGR~lva---------------------------~ag~lit~V~~~k~~~~~~~i~d~g~~~~~~~~~~~~~~~~~ 279 (365)
..+-||.|+.. .+..++++|+.+. ...++++|+|......+..........
T Consensus 273 ~~lrpG~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~--~~~~~~vd~G~k~~~~d~g~~~~~~~~ 350 (426)
T 3gwq_A 273 VVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIP--EPDRAIIGLGKRDSAFDAGMPEPARHY 350 (426)
T ss_dssp EEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEE--ETTEEEESCCTTTSCGGGCCCEEEEEE
T ss_pred EEECCCEEEECCCCHHHHCCCCHHHCCCHHCCCCCCCCEEEEEEEEEEEEC--CCCEEEECCCCEEEEECCCCCCCCEEC
T ss_conf 686263488615631121133200013010134323311379988998775--688799826656777226777550201
Q ss_pred CCC-------CCCEEEEEEECCCCCCC-EEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEE-E
Q ss_conf 779-------99437999706668763-54304538988977789982788455132136788678808999778808-9
Q T0515 280 LPN-------EGSHSYMICGKSCLAGD-VFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSV-R 350 (365)
Q Consensus 280 ~~~-------~~~~~~~i~G~~C~~~D-~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~-~ 350 (365)
... .....+.|.| |. .+ .+......+++++||.|.|..- +.. ..+|.+ +..+++++|+.+ +
T Consensus 351 ~~g~~~~~~~~~~~~~~i~g--~s-dEH~iv~~~~~~~l~vGD~V~l~P~--H~c---~t~~~~--~~~~vv~~~~~v~~ 420 (426)
T 3gwq_A 351 RPGNEAPRDIAASEGWEIFG--LM-DQHAYLRIPAGADLKVGDMIAFDIS--HPC---LTFDKW--RQVLVVDPAYRVTE 420 (426)
T ss_dssp CTTSSSCEECCGGGCCEEEE--EC-SSCEEEECCTTCSCCTTCEEEEECS--SGG---GGGGGC--SEEEEECTTSBEEE
T ss_pred CCCCCCCCCCCCCCCEEEEE--EC-CCEEEEECCCCCCCCCCCEEEEECC--CCC---CCHHHC--CEEEEEECCCEEEE
T ss_conf 25666763013799806968--82-6605998999998999999999828--788---063418--88999979996999
Q ss_pred EEEE
Q ss_conf 9983
Q T0515 351 TVRE 354 (365)
Q Consensus 351 ~ir~ 354 (365)
+++.
T Consensus 421 ~~~t 424 (426)
T 3gwq_A 421 VIET 424 (426)
T ss_dssp EEEC
T ss_pred EEEE
T ss_conf 9970
No 15
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.87 E-value=2.4e-19 Score=141.98 Aligned_cols=323 Identities=16% Similarity=0.088 Sum_probs=196.6
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECC-
Q ss_conf 8885678558999999999999972179879872021589899999998088-26772889999999707987277047-
Q T0515 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSV- 79 (365)
Q Consensus 2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~- 79 (365)
+.||++++|+++|++|++.+++.++..++++...+||++.+.|++.+.+.|+ +|.|++..|++..++.|.+++++..+
T Consensus 12 ~dTP~lviDl~~l~~N~~~~~~~~~~~~~~~~~~vKah~~~~i~~~~~~~G~~~~~vat~~Ea~~l~~~g~~~~l~~~~~ 91 (376)
T 3llx_A 12 PDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLYAVGI 91 (376)
T ss_dssp SCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf 79966998799999999999986414498499996105789999999978999899647999999997799966992366
Q ss_pred C-CCHHHHHHHHHCCC--EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCC
Q ss_conf 7-88668999997288--00218989999999972588711311567774554344667887101314899999973690
Q T0515 80 A-YGDNEIDEVVSHAD--KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRI 156 (365)
Q Consensus 80 ~-k~~~~i~~a~~~g~--~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~i 156 (365)
. .+.+.+..+...+. .+.+||+++++.+.+.++.....++|.+.++.+.+...... .. .............+
T Consensus 92 ~~~~~~~~~~~~~~~~~i~~~vds~~~~~~l~~~a~~~~~~~~v~l~vd~G~~R~G~~~----~~-~~~~~~~~~~~~~~ 166 (376)
T 3llx_A 92 APAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDHRGGIKP----SD-SKLLTIAKTLGEHF 166 (376)
T ss_dssp CGGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSSSSSCBCT----TC-THHHHHHHHHGGGE
T ss_pred CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH----HH-HHHHHHHHHHCCCC
T ss_conf 80778999987511775999968799999999999875980477640135567688792----58-99999754301333
Q ss_pred EEEEEEECC-C-CCCHH----HHH---HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC---------------CCHHHH
Q ss_conf 489985067-8-76779----999---99999999999844565166504777898889---------------788999
Q T0515 157 NGFMIHNNC-E-NKDFG----LFD---RMLGEIEERFGALIARVDWVSLGGGIHFTGDD---------------YPVDAF 212 (365)
Q Consensus 157 ~Gih~H~gs-~-~~~~~----~~~---~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~---------------~~~~~~ 212 (365)
.|++.|.|. . ..+.+ ... +.+..+.+.+.+.+..+..++.||+....+.. .+....
T Consensus 167 ~gl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ggt~~~~~~~~~~~~~~~~~G~~~~~d~~~~ 246 (376)
T 3llx_A 167 TGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYTTFDLVMK 246 (376)
T ss_dssp EEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCSEECCCGGGTCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCCEEEEEEEEEECCHHHH
T ss_conf 21113131102459889999999999999998642455249986689993860454540389857999787633088775
Q ss_pred HHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCC-----CCCCC-CCCCE
Q ss_conf 9999998612660899971620010550899999974047746999826543102420102453-----23377-99943
Q T0515 213 SARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRET-----AKVLP-NEGSH 286 (365)
Q Consensus 213 ~~~i~~~~~~~~~~l~~EpGR~lva~ag~lit~V~~~k~~~~~~~i~d~g~~~~~~~~~~~~~~-----~~~~~-~~~~~ 286 (365)
.... ......+..++++|+..+. ....+++|+|......+....... ....+ .....
T Consensus 247 -----~~~~-----------~~~~~~a~~v~~~vi~~~~-~~~~~~~~~G~~~~~~d~g~~~~~~~~g~g~~~~~~g~~~ 309 (376)
T 3llx_A 247 -----NIGV-----------CDFSHIAMSVVTTVIGHNK-EKNWLLTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGSVL 309 (376)
T ss_dssp -----HHTS-----------CCGGGCCEEEEEEEEEEET-TTTEEEESCCHHHHCSCCGGGGSSSCCBTCEEECTTSCEE
T ss_pred -----HCCC-----------CCCCCCCEEEEEEEEEECC-CCCEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf -----0567-----------8624211599999986147-7776786266413202467766651210572236788879
Q ss_pred EEEEEECCCCCCCEEEC--CCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 79997066687635430--45389889777899827884551321367886788089997788089998
Q T0515 287 SYMICGKSCLAGDVFGE--FRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVR 353 (365)
Q Consensus 287 ~~~i~G~~C~~~D~~~~--~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir 353 (365)
+-...+.+++..=++.. ....+++++||.|.+.-- +...- .|.+ +..+++++|..+..+-
T Consensus 310 ~~~~v~~~s~EH~ii~~~d~~~~~~l~vGD~v~l~p~--H~c~t---~~~~--~~~~vv~~~~v~~~W~ 371 (376)
T 3llx_A 310 DGLCVNSTSQEHGVIELSDAYQLEDFPVGHQLRIMPN--HACAT---AAMH--PVYHVLMSDGSHNTWQ 371 (376)
T ss_dssp EEEEBCEECSSCEEEECCTTCCGGGSCTTCEEEEECS--CHHHH---HTTC--SEEEEECTTSCEEEEE
T ss_pred CCCEEEEECCCCCEEECCCCCCCCCCCCCCEEEEECC--CCCHH---HHHC--CEEEEEECCEEEEEEC
T ss_conf 9838941047641688888876678999989999768--65354---7618--8799999998999950
No 16
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.75 E-value=1.2e-15 Score=118.27 Aligned_cols=296 Identities=13% Similarity=0.049 Sum_probs=183.4
Q ss_pred CCCEEE-ECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEE
Q ss_conf 885678-55899999999999997217987987202158----9899999998088-26772889999999707987277
Q T0515 3 ETPYYL-IDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHA 76 (365)
Q Consensus 3 gTP~~v-~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~ 76 (365)
.++.|+ +|+++|++|++.+|+.. ++.+++--||||. ...+.+++.++|+ +|-|++..|....++.+....++
T Consensus 5 ~~r~~~eIdl~al~~N~~~ir~~~--~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~g~~~~il 82 (386)
T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARA--PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM 82 (386)
T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTS--TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
T ss_conf 972899984999999999999768--998499999452464789999999998698999983699999999708999858
Q ss_pred ECCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HH
Q ss_conf 047788668999997288002189899999999725887113115677745543446678871013148999------99
Q T0515 77 YSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VE 150 (365)
Q Consensus 77 ~~~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~ 150 (365)
......+++++.+++++..+++.|.++++.+.+.+......+++.+.++.+.+ ++|+...+. ..
T Consensus 83 vl~~~~~~~~~~~~~~~~~~~i~s~~~l~~~~~~~~~~~~~~~vhLkiDTGM~----------RlG~~~~e~~~l~~~~~ 152 (386)
T 1vfs_A 83 CWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKADTGLG----------RNGCQPADWAELVGAAV 152 (386)
T ss_dssp ECCCCTTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCSSCC----------SSSBCHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCC----------CCCCCCHHHHHHHHHHH
T ss_conf 98158505688865412230206599999999765513676328999527777----------56737137899988766
Q ss_pred HH----HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHH---HHHHCCCCCEEEECCCCCC---CCCCCCHHHHHHHHHHH
Q ss_conf 97----369048998506787-6779999999999999---9984456516650477789---88897889999999998
Q T0515 151 RV----MDRINGFMIHNNCEN-KDFGLFDRMLGEIEER---FGALIARVDWVSLGGGIHF---TGDDYPVDAFSARLRAF 219 (365)
Q Consensus 151 ~~----~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~---~~~~~~~~~~idiGGG~~~---~~~~~~~~~~~~~i~~~ 219 (365)
.. ...+.|+..|..+-. .+.......++.+.+. +.+.+.+...+.++..-+. +-..+++ +|.=
T Consensus 153 ~~~~~~~l~~~gi~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNSa~~l~~p~~~~d~------vR~G 226 (386)
T 1vfs_A 153 AAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL------VRTG 226 (386)
T ss_dssp HHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSE------EEEC
T ss_pred HHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCC------CCCC
T ss_conf 5421687646899860233443202778999999999999998727886056631331003582104860------2557
Q ss_pred HHCCCEEEEE---ECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCC
Q ss_conf 6126608999---7162001055089999997404----------------77469998265431024201024532337
Q T0515 220 SDRYGVQIYL---EPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVL 280 (365)
Q Consensus 220 ~~~~~~~l~~---EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~ 280 (365)
..-+|..-.. .+...=..++..+.++|+.+|+ .+..++++..|+...+.+.+...... ..
T Consensus 227 i~lYG~~p~~~~~~~~~~~lkpv~~l~a~ii~v~~v~~G~~VgYg~~~~~~~~~~ia~v~iGYaDG~~R~l~~~~~v-~i 305 (386)
T 1vfs_A 227 LAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGRGPV-LV 305 (386)
T ss_dssp GGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTTTCEE-EE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEE-EE
T ss_conf 33067788623267334573466898888887677579975402323024677614686120004644235577089-99
Q ss_pred CCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 799943799970666876354304538988977789982788
Q T0515 281 PNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA 322 (365)
Q Consensus 281 ~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G 322 (365)
..+.+.|.|.+| +|.+.-++.-+++++||.+.+..-.
T Consensus 306 ---~G~~~pvvGrvs--MD~~~vDvt~~~~~~GD~V~l~G~~ 342 (386)
T 1vfs_A 306 ---AGKIRRAAGRIA--MDQFVVDLGEDLAEAGDEAVILGDA 342 (386)
T ss_dssp ---TTEEEEBCSCCC--SSCEEEEEETCCCCTTCEEEEECCG
T ss_pred ---CCEEEEEEEEEC--CCEEEEECCCCCCCCCCEEEEEECC
T ss_conf ---999938972985--5717998889878989999998689
No 17
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.71 E-value=3e-14 Score=109.31 Aligned_cols=297 Identities=13% Similarity=0.067 Sum_probs=177.9
Q ss_pred EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 85589999999999999721798798720215----89899999998088-26772889999999707987277047788
Q T0515 8 LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSVAYG 82 (365)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~~k~ 82 (365)
++|+++|++|++.+|+..+ +.+++--|||| -...|.+.+.++|+ +|-|++..|....++.|....++......
T Consensus 15 ~Idl~al~~N~~~lr~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Il~l~~~~ 92 (384)
T 1xfc_A 15 MVDLGAIEHNVRVLREHAG--HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPP 92 (384)
T ss_dssp EEEHHHHHHHHHHHHHHHT--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEECCCCT
T ss_pred EECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 9829999999999997689--98399999250363788999999997796999992799999999709988669984662
Q ss_pred HHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH----HHHCCCEE
Q ss_conf 66899999728800218989999999972588711311567774554344667887101314899999----97369048
Q T0515 83 DNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE----RVMDRING 158 (365)
Q Consensus 83 ~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~----~~~~~i~G 158 (365)
++++..+++++...+++|.++++.+.+.++.....+++.+.++.+.++..... ..+. ...+... ....++.|
T Consensus 93 ~~~~~~~~~~~~~~~i~s~~~~~~l~~~~~~~~~~~~vhLkiDTGM~RlG~~~---~e~~-~~~~~~~~~~~~~~l~l~G 168 (384)
T 1xfc_A 93 GIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGP---AQFP-AMLTALRQAMAEDAVRLRG 168 (384)
T ss_dssp TCCCHHHHHTTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSSCCSSSBCT---TTHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH---HHHH-HHHHHHHHHHHHCCCCCEE
T ss_conf 77899987513201334589999989888753134214789746777678680---6778-8888888776421555101
Q ss_pred EEEEECCCCC-CHHHHHHHHHHHHHH---HHHHCCCCCEEEECC--CC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9985067876-779999999999999---998445651665047--77-8988897889999999998612660899971
Q T0515 159 FMIHNNCENK-DFGLFDRMLGEIEER---FGALIARVDWVSLGG--GI-HFTGDDYPVDAFSARLRAFSDRYGVQIYLEP 231 (365)
Q Consensus 159 ih~H~gs~~~-~~~~~~~~l~~~~~~---~~~~~~~~~~idiGG--G~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~Ep 231 (365)
+..|..+-.. +.....+.+.++.+. +.+.+.+.....+.. |. -.+...+++ +|.=..-+|..-..++
T Consensus 169 i~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~~~~nS~~~~~~~~~~~d~------vRpGi~lYG~~p~~~~ 242 (384)
T 1xfc_A 169 LMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDL------VRPGIAVYGLSPVPAL 242 (384)
T ss_dssp EECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSE------ECCSGGGGTCCSSGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHCCC------CCCCCEEECCCCCCCC
T ss_conf 2433540332430556999999999998766407871255553035554185110342------3567303225677531
Q ss_pred CCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 62001055089999997404----------------77469998265431024201024532337799943799970666
Q T0515 232 GEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSC 295 (365)
Q Consensus 232 GR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C 295 (365)
-..-..++..+.++|+.+|. .+...+++.-|+...+.+.+...... .. ..+.+.|.|.+|
T Consensus 243 ~~~~l~pv~~l~a~ii~ir~v~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~~~~v-~i---~g~~~pivG~vs 318 (384)
T 1xfc_A 243 GDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEV-LI---NGRRCPGVGRIC 318 (384)
T ss_dssp CCTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGTTTCEE-EE---TTEEEEEESCCC
T ss_pred CCCCCCCCHHEEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCCEE-EE---CCEEEEEEEEEC
T ss_conf 10146763000000100044379983465630203676403676101105753104778589-99---999957844885
Q ss_pred CCCCEEECCC-CCC-CCCCCCEEEEECCC
Q ss_conf 8763543045-389-88977789982788
Q T0515 296 LAGDVFGEFR-FAE-ELKVGDRISFQDAA 322 (365)
Q Consensus 296 ~~~D~~~~~~-~lp-~l~~GD~l~~~~~G 322 (365)
+|.+.-+. ..| ++++||.+.++.-.
T Consensus 319 --MD~~~vDvt~~~~~~~~Gd~V~l~G~~ 345 (384)
T 1xfc_A 319 --MDQFMVDLGPGPLDVAEGDEAILFGPG 345 (384)
T ss_dssp --SSCEEEEEESSSCCCCTTCEEEEECSS
T ss_pred --CCCEEEECCCCCCCCCCCCEEEEECCC
T ss_conf --662799814887779999999997089
No 18
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.70 E-value=2.7e-13 Score=103.12 Aligned_cols=318 Identities=13% Similarity=0.073 Sum_probs=192.5
Q ss_pred EEE-ECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECC
Q ss_conf 678-5589999999999999721798798720215----89899999998088-26772889999999707987277047
Q T0515 6 YYL-IDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSV 79 (365)
Q Consensus 6 ~~v-~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~ 79 (365)
.|+ +|+++|++|++.+++..+ ++.+++--|||| -...|.+.+.+.|+ +|-|++..|....++.+....++...
T Consensus 12 t~~eIdl~al~~Ni~~i~~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~i~EA~~LR~~gi~~~Ilvl~ 90 (391)
T 2vd8_A 12 TWVEVDLDAIYNNVTHIXEFIP-SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVLG 90 (391)
T ss_dssp CEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEECS
T ss_pred EEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEC
T ss_conf 8999859999999999997479-998799999460365887999999998798999991699999999739999889972
Q ss_pred CCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHH-H---HHHHH---
Q ss_conf 7886689999972880021898999999997258871131156777455434466788710131489-9---99997---
Q T0515 80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV-P---KVERV--- 152 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~-~---~~~~~--- 152 (365)
...++++..+.+++...++.|.+++..+.+..+. ...+++...++.+.+ ++|+... + .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~-~~~~~vhlkiDTGM~----------RlG~~~~~e~~~~~~~l~~~ 159 (391)
T 2vd8_A 91 PSPPRDINVAAENDVALTVFQXEWVDEAIXLWDG-SSTMXYHINFDSGMG----------RIGIRERXELXGFLXSLEGA 159 (391)
T ss_dssp CCCGGGHHHHHHTTEEEECCCHHHHHHHHHHCCS-SCCEEEEEEBCSSCC----------SSSBCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHC-CCCEEEEEEECCCCC----------CCCCCCHHHHHHHHHHHHHC
T ss_conf 8882666787751465312148899999998614-796489999528998----------58888289999999999728
Q ss_pred -HCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHH---HHCCCCCEEEECCC---CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf -36904899850678-7677999999999999999---84456516650477---7898889788999999999861266
Q T0515 153 -MDRINGFMIHNNCE-NKDFGLFDRMLGEIEERFG---ALIARVDWVSLGGG---IHFTGDDYPVDAFSARLRAFSDRYG 224 (365)
Q Consensus 153 -~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~---~~~~~~~~idiGGG---~~~~~~~~~~~~~~~~i~~~~~~~~ 224 (365)
..++.|+..|..+- ..+.....+.++.+.+.+. +.+.+...+.+... +..+-..+++ +|.=..-+|
T Consensus 160 ~~l~l~Gi~SH~a~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~------vR~Gi~lYG 233 (391)
T 2vd8_A 160 PFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNA------VRIGIAMYG 233 (391)
T ss_dssp TTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTE------EEESTTTTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCC------CCCCHHHCC
T ss_conf 99664022421376887313567889999999999998618983205522657663674135774------516853227
Q ss_pred EEEEEECCC----EEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 089997162----001055089999997404----------------774699982654310242010245323377999
Q T0515 225 VQIYLEPGE----ASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEG 284 (365)
Q Consensus 225 ~~l~~EpGR----~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~ 284 (365)
..-. .+.+ .-..++..+-++|+.+|+ ++...+++..|+...+.+.+... .... .
T Consensus 234 ~~p~-~~~~~~~~~~Lkpv~sl~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r~~s~~--~v~i---~ 307 (391)
T 2vd8_A 234 LSPS-VEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF--EVLV---N 307 (391)
T ss_dssp CCSC-TTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC--EEEE---T
T ss_pred CCCC-CCCCCCCCCCCCEEEEEEEEHHHEEECCCCCCCCCCCEEECCCCEEEEEECCEECCCCCCCCCCC--EEEE---C
T ss_conf 7786-33244555343232655411100488369997786761761366589986647257644256899--8999---9
Q ss_pred CEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC------HHHHHH---------HCCCCCCCCCEEEEEECCCEE
Q ss_conf 43799970666876354304538988977789982788------455132---------136788678808999778808
Q T0515 285 SHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA------GYTMVK---------KNWFNGVKMPAIAIRELDGSV 349 (365)
Q Consensus 285 ~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G------AY~~~~---------~s~fn~~~~p~~v~~~~dg~~ 349 (365)
.+.+.|.|.+| +|.+.-+.. .++++||.+.+.... +-..+. -+.. -+|-+.++++ +|++
T Consensus 308 g~~~pivGris--MD~~~VDi~-~~v~~GD~v~l~G~~~~~~i~~~~~A~~~gti~yEll~~l--~~Rv~R~yv~-~g~~ 381 (391)
T 2vd8_A 308 GXRVPIVGRVT--MDQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI--SFRVPRIFIR-NGXV 381 (391)
T ss_dssp TEEEEEESCCC--SSCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS--CTTSCEEEEE-TTEE
T ss_pred CEECCEEEEEC--CCEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC--CCCCCEEEEE-CCEE
T ss_conf 98751754763--543899899-9989999999978999877899999998789757586187--8888859997-9969
Q ss_pred EEEE
Q ss_conf 9998
Q T0515 350 RTVR 353 (365)
Q Consensus 350 ~~ir 353 (365)
--++
T Consensus 382 ~~~~ 385 (391)
T 2vd8_A 382 VEVI 385 (391)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9983
No 19
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=99.68 E-value=2e-13 Score=104.01 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=182.9
Q ss_pred CEE-EECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEEC
Q ss_conf 567-855899999999999997217987987202158----9899999998088-2677288999999970798727704
Q T0515 5 PYY-LIDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYS 78 (365)
Q Consensus 5 P~~-v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~ 78 (365)
|.| =+|+++|++|++.+++..+ ++.+++--||||. ...|.+.+.++|+ +|-|++..|....++.+.+..++..
T Consensus 7 ~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~i~EA~~LR~~gi~~~Ilvl 85 (388)
T 1bd0_A 7 DTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL 85 (388)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 78999969999999999997489-99979999816036488799999999869799997689999999971899848996
Q ss_pred CCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH-HHHCCCE
Q ss_conf 778866899999728800218989999999972588711311567774554344667887101314899999-9736904
Q T0515 79 VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE-RVMDRIN 157 (365)
Q Consensus 79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~-~~~~~i~ 157 (365)
....++++..+++++...++.|.+.++.+.+..+. ...+++.+.++.+.++..- ....+-....+... .....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~vhLkiDTGM~RlG~---~~~e~~~~~~~~~~~~~~l~l~ 161 (388)
T 1bd0_A 86 GASRPADAALAAQQRIALTVFRSDWLEEASALYSG-PFPIHFHLKMDTGMGRLGV---KDEEETKRIVALIERHPHFVLE 161 (388)
T ss_dssp SCCCGGGHHHHHHTTEEEEECCHHHHHHHHHHCCC-SSCEEEEEEBCSSSCSSSB---CSHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCC---CHHHHHHHHHHHHHHCCCCEEE
T ss_conf 27876887764134543234049988767655414-7744899998168875686---5477899999999858896046
Q ss_pred EEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC---CCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-
Q ss_conf 8998506787-6779999999999999998445651665047778---9888978899999999986126608999716-
Q T0515 158 GFMIHNNCEN-KDFGLFDRMLGEIEERFGALIARVDWVSLGGGIH---FTGDDYPVDAFSARLRAFSDRYGVQIYLEPG- 232 (365)
Q Consensus 158 Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpG- 232 (365)
|+..|..+-. .+.....+.+..+.......+.+...+.++..-+ .+...+|+ ++.=..-+|. ...++
T Consensus 162 Gi~tHla~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anSa~~l~~~~~~~d~------vRpGi~lyG~--~p~~~~ 233 (388)
T 1bd0_A 162 GLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNM------VRFGIAMYGL--APSPGI 233 (388)
T ss_dssp EEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTE------EEECGGGGTC--CSCGGG
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCCCCCC------EEEEEEEEEC--CCCCCC
T ss_conf 88842567777771899999999999987434665316640769886497345773------4401677805--777665
Q ss_pred ----CEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ----2001055089999997404----------------77469998265431024201024532337799943799970
Q T0515 233 ----EASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICG 292 (365)
Q Consensus 233 ----R~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G 292 (365)
..-..++..|-++|+.+|. .+...+++..|+.+.+.+.+.. . .... ..+.+.|.|
T Consensus 234 ~~~~~~~lkpv~sl~a~Ii~i~~~~~G~~vgYg~~~~~~~~~~iavv~iGYaDG~~r~~~~-~-~V~i---~g~~~pivG 308 (388)
T 1bd0_A 234 KPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQH-F-HVLV---DGQKAPIVG 308 (388)
T ss_dssp GGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCGGGGG-C-EEEE---TTEEEEEES
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC-C-EEEE---CCEEEEEEE
T ss_conf 5455446544438999998878758997255476334577836987610513565301469-8-8999---999817864
Q ss_pred CCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 666876354304538988977789982788
Q T0515 293 KSCLAGDVFGEFRFAEELKVGDRISFQDAA 322 (365)
Q Consensus 293 ~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G 322 (365)
.+| +|.+.-+..- ++++||.+.+..-.
T Consensus 309 ~vs--MD~~~vDvt~-~~~~GD~V~l~G~~ 335 (388)
T 1bd0_A 309 RIC--MDQCMIRLPG-PLPVGTKVTLIGRQ 335 (388)
T ss_dssp CCC--SSCEEEECSS-CCCTTCEEEEEEEE
T ss_pred EEE--CCEEEEECCC-CCCCCCEEEEECCC
T ss_conf 871--3628998899-98999999998789
No 20
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.65 E-value=2.2e-13 Score=103.76 Aligned_cols=285 Identities=14% Similarity=0.080 Sum_probs=179.5
Q ss_pred CEEE-ECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEEC
Q ss_conf 5678-5589999999999999721798798720215----89899999998088-2677288999999970798727704
Q T0515 5 PYYL-IDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYS 78 (365)
Q Consensus 5 P~~v-~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~ 78 (365)
|.++ +|+++|++|++.+++... ++.+++--|||| -...|.+.+.+.|+ +|-|++..|....++.+....++..
T Consensus 8 ~~~leIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~i~EA~~LR~~g~~~~ilvl 86 (371)
T 3e5p_A 8 PTRLHIDTQAITENVQKECQRLP-EGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILIL 86 (371)
T ss_dssp SCEEEECHHHHHHHHHHHHHSSC-SSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEEE
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEE
T ss_conf 98999969999999999998579-98979999955346478899999999879799998199999999971899975776
Q ss_pred CCCCHHHHHHHHHCCCEECCCCHHHHHHHH-HHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHH-HHCCC
Q ss_conf 778866899999728800218989999999-9725887113115677745543446678871013148999999-73690
Q T0515 79 VAYGDNEIDEVVSHADKIIFNSISQLERFA-DKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER-VMDRI 156 (365)
Q Consensus 79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~-~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~-~~~~i 156 (365)
....++++..+++++..+++.|.++++++. +.++.....++|.+.++.+.++... ..........+.... ....+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~i~s~~~l~~~~~~~a~~~~~~~~vhlkiDTGM~RlG~---~~~ee~~~~~~~~~~~~~~~~ 163 (371)
T 3e5p_A 87 SVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDTGMGRIGF---LTPEETKQAVRFVQSHKEFLW 163 (371)
T ss_dssp EECCGGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBCSSSCSSSB---CSSHHHHHHHHHHHHSTTBCC
T ss_pred ECCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC---CCHHHHHHHHHHHHHHHCEEC
T ss_conf 05787899999864981797358998888998888539944799998279873798---737888999999876206100
Q ss_pred EEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 489985067876-7799999999999999984456516650477789---888978899999999986126608999716
Q T0515 157 NGFMIHNNCENK-DFGLFDRMLGEIEERFGALIARVDWVSLGGGIHF---TGDDYPVDAFSARLRAFSDRYGVQIYLEPG 232 (365)
Q Consensus 157 ~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~---~~~~~~~~~~~~~i~~~~~~~~~~l~~EpG 232 (365)
.|+..|..+... +.+...+.+..+.+...........+.+..+... +...++ +.-||
T Consensus 164 ~gi~th~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~~ns~~~~~~~~~~~d-------------------~vR~G 224 (371)
T 3e5p_A 164 EGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGN-------------------MIRYG 224 (371)
T ss_dssp CEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTTSSCS-------------------EEEEC
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCC-------------------CEEEC
T ss_conf 20222101434336768999999999999862147642675063765428412466-------------------26403
Q ss_pred CEE---------------EECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 200---------------1055089999997404----------------774699982654310242010245323377
Q T0515 233 EAS---------------ITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLP 281 (365)
Q Consensus 233 R~l---------------va~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~ 281 (365)
..+ ..++..+.++|+.+|+ .+...+++..|+...+.+.+... ....
T Consensus 225 i~lYG~~p~~~~~~~~~~lkpv~~l~a~Ii~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~l~~~--~v~i- 301 (371)
T 3e5p_A 225 VAMYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF--TVLV- 301 (371)
T ss_dssp GGGGTCCTTTTSSCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC--EEES-
T ss_pred CEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEECCCCC--EEEE-
T ss_conf 0124899876655632255321666984038898438886676642124666338997127304611034698--8999-
Q ss_pred CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEC
Q ss_conf 999437999706668763543045389889777899827
Q T0515 282 NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQD 320 (365)
Q Consensus 282 ~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~ 320 (365)
..+.+.|.|.+| +|.+.-+.. +++++||.+.++.
T Consensus 302 --~g~~~pivG~is--MD~~~vdvt-~~~~~GD~V~l~G 335 (371)
T 3e5p_A 302 --NGKRCEIVGRVC--MDQCMIRLA-EEVPVGPVVTLVG 335 (371)
T ss_dssp --SSCEEEEESCCC--SSCEEEEES-SCCCSCCEEEEEE
T ss_pred --CCEEEEEEEEEC--CCEEEEECC-CCCCCCCEEEEEE
T ss_conf --999979860873--541799888-9999999999995
No 21
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.64 E-value=1.2e-13 Score=105.46 Aligned_cols=291 Identities=14% Similarity=0.074 Sum_probs=171.2
Q ss_pred EEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCC-CEEECC
Q ss_conf 67855899999999999997217987987202158----9899999998088-26772889999999707987-277047
Q T0515 6 YYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKE-THAYSV 79 (365)
Q Consensus 6 ~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~-~i~~~~ 79 (365)
.-.+|+++|++|++.+++... +.+++--||||. ...|.+++.++|+ +|-|++..|....++.+.+. +++..+
T Consensus 22 ~~~Idl~al~~N~~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~illl~~ 99 (376)
T 3kw3_A 22 IATIDVRAIVANYRTLAQHVA--PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIALLN 99 (376)
T ss_dssp EEEECHHHHHHHHHHHHHHHT--TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEETT
T ss_pred EEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHCC
T ss_conf 999859999999999997579--983999996652516499999999986969999938899999997278530677617
Q ss_pred CCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH-------HH
Q ss_conf 78866899999728800218989999999972588711311567774554344667887101314899999-------97
Q T0515 80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE-------RV 152 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~-------~~ 152 (365)
....++.+.+.+++...++.|.++++.+.+.+.......++.+.++.+.+ |+|+...+..+ ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~i~s~~~l~~l~~~a~~~~~~~~vhLkvDTGM~----------RlG~~~~e~~~~i~~~~~~~ 169 (376)
T 3kw3_A 100 GFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNMS----------RLGLDKKELQKLIKNPTIFE 169 (376)
T ss_dssp CCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSCC----------SSSBCHHHHHHHHHCCTHHH
T ss_pred CCCHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCC----------CCCCCHHHHHHHHHHHHHCC
T ss_conf 89778999987414564106599999999999972897059999658887----------56778156789998876414
Q ss_pred HCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 36904899850678-7677999999999999999844565166504777-898889788999999999861266089997
Q T0515 153 MDRINGFMIHNNCE-NKDFGLFDRMLGEIEERFGALIARVDWVSLGGGI-HFTGDDYPVDAFSARLRAFSDRYGVQIYLE 230 (365)
Q Consensus 153 ~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~E 230 (365)
...+.|+..|..+- ..+.......+..+.............+.-.+|. -.+...+++ +|.=..-+|..- ..
T Consensus 170 ~l~i~Gi~THfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSa~~~~~~~~~~d~------vR~Gi~lYG~~p-~~ 242 (376)
T 3kw3_A 170 KAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDL------VRPGIALYGVDP-HG 242 (376)
T ss_dssp HSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTE------ECCSGGGGTCCT-TC
T ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCC------CCCCEEEECCCC-CC
T ss_conf 65268897201233456737899999999999850775455576758987682321564------104147756877-53
Q ss_pred CCCEEEECCEEEEEEEEEECCC----------------CCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 1620010550899999974047----------------746999826543102420102453233779994379997066
Q T0515 231 PGEASITKSTTLEVTVLDTLYN----------------GKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKS 294 (365)
Q Consensus 231 pGR~lva~ag~lit~V~~~k~~----------------~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~ 294 (365)
.......+...+-++|+.+|+- +...+++..|+...+.+.+.......+ ..+.+.|.|.+
T Consensus 243 ~~~~~l~pv~~l~s~i~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~~~~v~i----~g~~~pivGrv 318 (376)
T 3kw3_A 243 KHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSNKGTVYF----NGHKLPIVGHI 318 (376)
T ss_dssp CSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGTTTCEEEE----TTEEEEBCSCC
T ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE----CCEEEEEEEEE
T ss_conf 42212465407887777888863888656576424688749985101246763424578867999----99980794073
Q ss_pred CCCCCEEECCCC-CC-CCCCCCEEEEECC
Q ss_conf 687635430453-89-8897778998278
Q T0515 295 CLAGDVFGEFRF-AE-ELKVGDRISFQDA 321 (365)
Q Consensus 295 C~~~D~~~~~~~-lp-~l~~GD~l~~~~~ 321 (365)
| +|.+.-+.. +| ++++||.+.+..-
T Consensus 319 s--MD~~~vDvt~~~~~~~vGD~V~l~G~ 345 (376)
T 3kw3_A 319 S--MDSIIVDATDLDKKPQRGDWVELIGP 345 (376)
T ss_dssp C--SSCEEEECTTCSSCCCTTCEEEEEBT
T ss_pred C--CCEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf 3--42489977788777999999999809
No 22
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.62 E-value=5.2e-13 Score=101.33 Aligned_cols=286 Identities=16% Similarity=0.080 Sum_probs=173.1
Q ss_pred EEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCC-CEEECC
Q ss_conf 67855899999999999997217987987202158----9899999998088-26772889999999707987-277047
Q T0515 6 YYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKE-THAYSV 79 (365)
Q Consensus 6 ~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~-~i~~~~ 79 (365)
.-.+|+++|++|++.+|+.. +.+++--||||. ...+.+++.+ |+ +|-|++..|....++.+... +++..+
T Consensus 5 ~~eIdl~al~~N~~~lr~~~---~~ki~aVVKanAYGhG~~~ia~~L~~-g~~~faVa~~~Ea~~LR~~g~~~~il~l~~ 80 (357)
T 1rcq_A 5 RALIDLQALRHNYRLAREAT---GARALAVIKADAYGHGAVRCAEALAA-EADGFAVACIEEGLELREAGIRQPILLLEG 80 (357)
T ss_dssp EEEEEHHHHHHHHHHHHHHH---CSEEEEECHHHHHTTCHHHHHHHHTT-TCSEEEESSHHHHHHHHHTTCCSCEEETTC
T ss_pred EEEEEHHHHHHHHHHHHCCC---CCCEEEEEEECCCCCCHHHHHHHHHH-CCCEEEEEEHHHHHHHHHHCCCCCEECCCC
T ss_conf 99984999999999997066---99499999665353879999999995-699799989999999997099642011001
Q ss_pred CCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH-------HH
Q ss_conf 78866899999728800218989999999972588711311567774554344667887101314899999-------97
Q T0515 80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE-------RV 152 (365)
Q Consensus 80 ~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~-------~~ 152 (365)
...+++...+.+++..+++.|.++++.+.+.....+ +++.+.++.+.+ ++|+...+..+ ..
T Consensus 81 ~~~~~~~~~~~~~~i~~~i~s~~~~~~l~~~~~~~~--~~vhLkvDTGM~----------RlG~~~~e~~~~~~~~~~~~ 148 (357)
T 1rcq_A 81 FFEASELELIVAHDFWCVVHCAWQLEAIERASLARP--LNVWLKMDSGMH----------RVGFFPEDFRAAHERLRASG 148 (357)
T ss_dssp CSSGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSC--EEEEEEBCSSSC----------SSSBCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC--EEEEEEECCCCC----------CCCCCHHHHHHHHHHHHHCC
T ss_conf 355778898886314656587999999997463664--369999726764----------33568378888899986414
Q ss_pred HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEECC--C-CCCCCCCCCHHHHHHHHHHHHHCCCEE--
Q ss_conf 369048998506787-6779999999999999998445651665047--7-789888978899999999986126608--
Q T0515 153 MDRINGFMIHNNCEN-KDFGLFDRMLGEIEERFGALIARVDWVSLGG--G-IHFTGDDYPVDAFSARLRAFSDRYGVQ-- 226 (365)
Q Consensus 153 ~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~~~~idiGG--G-~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 226 (365)
...+.|+..|..+-. .+.....+.+..+.+...... ..+.+.. | +-.+-..+++ +|.=..=+|..
T Consensus 149 ~~~~~gi~tH~a~ad~~~~~~~~~q~~~f~~~~~~~~---~~~h~aNS~~~l~~~~~~~d~------vR~Gi~lYG~~p~ 219 (357)
T 1rcq_A 149 KVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQGLE---GEISLRNSPAVLGWPKVPSDW------VRPGILLYGATPF 219 (357)
T ss_dssp CEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHTTCC---SCEECCCHHHHHHCTTSCCSE------ECCCGGGGTCCSS
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHHCCCCCCCCE------ECCCCCCCCCCCC
T ss_conf 5440345653033556203679999999999875113---321146839885484024862------4667201456787
Q ss_pred EEEECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 9997162001055089999997404----------------774699982654310242010245323377999437999
Q T0515 227 IYLEPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMI 290 (365)
Q Consensus 227 l~~EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 290 (365)
-...+-..-..++..+-++|+.+|+ .+...+++..|+...+.+.+.......+ ..+.+.|
T Consensus 220 ~~~~~~~~~lkpv~~l~a~i~~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~~~~v~i----~G~~~pi 295 (357)
T 1rcq_A 220 ERAHPLADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADGTLVFI----DGKPGRL 295 (357)
T ss_dssp SSCCTTGGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCTTCEEEE----TTEEEEB
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCEEEE----CCEEEEE
T ss_conf 434454434651289986668989858999876543200257607998612001575410468829999----9999378
Q ss_pred EECCCCCCCEEECCC-CCCCCCCCCEEEEECCC
Q ss_conf 706668763543045-38988977789982788
Q T0515 291 CGKSCLAGDVFGEFR-FAEELKVGDRISFQDAA 322 (365)
Q Consensus 291 ~G~~C~~~D~~~~~~-~lp~l~~GD~l~~~~~G 322 (365)
.|.+| +|.+.-+. ..|+.++||.+.+.+-.
T Consensus 296 vGris--MD~~~vdvt~~~~~~~Gd~v~l~G~~ 326 (357)
T 1rcq_A 296 VGRVS--MDMLTVDLTDHPQAGLGSRVELWGPN 326 (357)
T ss_dssp CSCCC--SSCEEEECTTCTTCCTTCEEEEESSS
T ss_pred ECEEC--CCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 57634--04389988899778999999997899
No 23
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=99.61 E-value=1.7e-12 Score=97.95 Aligned_cols=280 Identities=14% Similarity=0.038 Sum_probs=171.9
Q ss_pred CEE-EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEEC
Q ss_conf 567-85589999999999999721798798720215----89899999998088-2677288999999970798727704
Q T0515 5 PYY-LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYS 78 (365)
Q Consensus 5 P~~-v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~ 78 (365)
|.+ -+|+++|++|++.+|+..+ +.+++-.|||| -...|.+.+.+.|+ +|-|++..|....++.|....++..
T Consensus 9 ~t~leIdl~al~~N~~~ik~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~Ilvl 86 (380)
T 3co8_A 9 STRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFILIL 86 (380)
T ss_dssp SCEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEEEC
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 87999979999999999996579--9829999974246478899999999869799999089999999973999837862
Q ss_pred CCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCC-------HHHHHHH
Q ss_conf 778866899999728800218989999999972588711311567774554344667887101314-------8999999
Q T0515 79 VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEW-------DVPKVER 151 (365)
Q Consensus 79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~-------~~~~~~~ 151 (365)
....++++..+.++++..++.|.++++.+.+.....+ ++|.+.++.+.+ |+|+. ..+.+..
T Consensus 87 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~~~~~~~~~~--~~vhLkiDTGM~----------RlG~~~~~~~~~~~~~l~~ 154 (380)
T 3co8_A 87 GPIDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEK--LSVNLAVDTGMN----------RIGVRSKKDLKDEIEFLQE 154 (380)
T ss_dssp SCCCGGGHHHHHHTTCEEEECCHHHHHHHHHHCTTCC--EEEEEEBCSSSC----------SSSBCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCEEEEECCHHHHHHHHHHHCCCC--CCEEEEEECCCC----------CCCCCCHHHHHHHHHHHHH
T ss_conf 6867666567765056422024999999998631588--615689826888----------6676733668999999765
Q ss_pred H--HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCC-CCEEEECCC-CCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 7--369048998506787-67799999999999999984456-516650477-789888978899999999986126608
Q T0515 152 V--MDRINGFMIHNNCEN-KDFGLFDRMLGEIEERFGALIAR-VDWVSLGGG-IHFTGDDYPVDAFSARLRAFSDRYGVQ 226 (365)
Q Consensus 152 ~--~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~-~~~idiGGG-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (365)
. ...+.|+..|..+-. .+.+...+.+..+.+.+..+... +..+.-.++ +.... .....++
T Consensus 155 ~~~~l~v~Gi~THfa~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~ns~a~~~~~~-------------~~~~~~d-- 219 (380)
T 3co8_A 155 HSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHVMNSGAAMYHSK-------------ELPGCNS-- 219 (380)
T ss_dssp CTTTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGG-------------GCTTSCS--
T ss_pred HCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCHH-------------HCCCCCC--
T ss_conf 1135440258713566666664899999999999997446752023314276645802-------------2565433--
Q ss_pred EEEECCCEE---------------EECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCC
Q ss_conf 999716200---------------1055089999997404----------------774699982654310242010245
Q T0515 227 IYLEPGEAS---------------ITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRE 275 (365)
Q Consensus 227 l~~EpGR~l---------------va~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~ 275 (365)
+.-||..+ ..++..|-++|+.+|+ ++...+++..|+...+.+.+...
T Consensus 220 -~vR~Gi~LYG~~p~~~~~~~~~~lkpv~~l~a~i~~ik~v~~G~~VGYg~~~~a~~~~~iavv~iGYaDG~~r~~~~~- 297 (380)
T 3co8_A 220 -IARVGTVVYGVEPSEGVLGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDF- 297 (380)
T ss_dssp -EEEESTTTTTCCTTTTSSSCGGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC-
T ss_pred -CCCCCCEEECCCCCCCCCCCHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCC-
T ss_conf -457873125567874545710137606999411136788588996555663203787059999415125515204798-
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 32337799943799970666876354304538988977789982788
Q T0515 276 TAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA 322 (365)
Q Consensus 276 ~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G 322 (365)
.... ..+.+.|.|.+| +|.+.-+.. .+.++||.+++..-.
T Consensus 298 -~Vli---~G~~~pivGris--MD~~~VDvt-~~~~vGD~V~l~G~~ 337 (380)
T 3co8_A 298 -QLLI---DGQKCRQVGQIA--MDQMMVALP-HEYPIGTEVTLIGKS 337 (380)
T ss_dssp -EEEE---TTEEEEEESCCC--SSCEEEEES-SCCCTTCEEEEEEEE
T ss_pred -EEEE---CCEEEEECCEEC--CCCEEEECC-CCCCCCCEEEEEECC
T ss_conf -7999---999924725724--471799899-999999999998589
No 24
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.60 E-value=1.4e-12 Score=98.57 Aligned_cols=292 Identities=12% Similarity=0.076 Sum_probs=175.8
Q ss_pred CCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCC-CEEEC
Q ss_conf 856785589999999999999721798798720215----8989999999808826772889999999707987-27704
Q T0515 4 TPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMDGTTSSSLFEVRLGRERFGKE-THAYS 78 (365)
Q Consensus 4 TP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~~~~-~i~~~ 78 (365)
+..-.+|+++|++|++.+|+.. ++.+++--|||| -...+.+.+.+.+ +|-|++..|....++.+... +++.+
T Consensus 23 ~a~~~Idl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~~-~faVa~i~EA~~LR~~gi~~~ilil~ 99 (379)
T 2rjg_A 23 AATVVINRRALRHNLQRLRELA--PASKMVAVVKANAYGHGLLETARTLPDAD-AFGVARLEEALRLRAGGITKPVLLLE 99 (379)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHS--TTSEEEEECHHHHHTTCHHHHHHHCTTCS-EEEESSHHHHHHHHHTTCCSCEEETT
T ss_pred CEEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCC-EEEEEEHHHHHHHHHHCCCCCEEECC
T ss_conf 6699997999999999999668--99869999956425487899999997099-89995999999999738998722034
Q ss_pred CCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHH------
Q ss_conf 77886689999972880021898999999997258871131156777455434466788710131489999997------
Q T0515 79 VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV------ 152 (365)
Q Consensus 79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~------ 152 (365)
+...++++..+.+++...++.|.++++.+.+...+.+ +++.+.++.+. .++|+...+.....
T Consensus 100 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~~~--~~vhLkvDTGM----------~RlG~~~~e~~~~~~~~~~~ 167 (379)
T 2rjg_A 100 GFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEP--VTVWMKLDTGM----------HRLGVRPEQAEAFYHRLTQC 167 (379)
T ss_dssp CCSCGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSC--BCEEEEBCSSC----------CSSSBCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCC--EEEEEEEECCC----------CCCCCCCHHHHHHHHHHHHH
T ss_conf 6788788999997377157578999999998613898--07999980888----------87888830557899999872
Q ss_pred --HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE--
Q ss_conf --369048998506787-677999999999999999844565166504777898889788999999999861266089--
Q T0515 153 --MDRINGFMIHNNCEN-KDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQI-- 227 (365)
Q Consensus 153 --~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l-- 227 (365)
...+.|+..|..+-. .+.....+.+..+.+............|=+|=+..+...+++ +|.=..-+|..-
T Consensus 168 ~~~l~~~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~hi~nSaa~~~~~~~~~d~------vRpGi~lYG~~p~~ 241 (379)
T 2rjg_A 168 KNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDW------VRPGIILYGVSPLE 241 (379)
T ss_dssp SSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCGGGCSSE------ECCCGGGGTCCSSS
T ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCC------CCCCCEEECCCCCC
T ss_conf 254421258846577654333899999999999984277421230563330686112452------15772266356543
Q ss_pred EEE-CCCEEEECCEEEEEEEEEECCC----------------CCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 997-1620010550899999974047----------------74699982654310242010245323377999437999
Q T0515 228 YLE-PGEASITKSTTLEVTVLDTLYN----------------GKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMI 290 (365)
Q Consensus 228 ~~E-pGR~lva~ag~lit~V~~~k~~----------------~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 290 (365)
..+ +-+.-..++..+-++|+.+|.- +...+++..|+...+.+.+.......+ ..+.+.|
T Consensus 242 ~~~~~~~~~Lkpv~sl~a~i~~v~~v~~G~~VgYg~~~~a~~d~~ia~vpiGYaDG~pR~~s~~~~Vli----~G~~~pi 317 (379)
T 2rjg_A 242 DRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLV----NGREVPI 317 (379)
T ss_dssp SSCCGGGGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCTTCEEEE----TTEEEEB
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEE----CCEEEEE
T ss_conf 435433457630478667999889847998567787265258859999833764573544679947999----9999157
Q ss_pred EECCCCCCCEEECCC-CCCCCCCCCEEEEECCC
Q ss_conf 706668763543045-38988977789982788
Q T0515 291 CGKSCLAGDVFGEFR-FAEELKVGDRISFQDAA 322 (365)
Q Consensus 291 ~G~~C~~~D~~~~~~-~lp~l~~GD~l~~~~~G 322 (365)
.|..| +|.+.-+. ..|+.++||.+.++.-+
T Consensus 318 vGrv~--MD~~~vdvt~~~~~~~GD~V~l~G~~ 348 (379)
T 2rjg_A 318 VGRVA--MDMICVDLGPQAQDKAGDPVILWGEG 348 (379)
T ss_dssp CSCCC--SSCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred EEEEC--CCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 65972--33289988898789999999997899
No 25
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.59 E-value=9.7e-13 Score=99.58 Aligned_cols=288 Identities=13% Similarity=0.100 Sum_probs=177.4
Q ss_pred CCEE-EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCC-C-CEEEECHHHHHHHHHCCCCCCEE
Q ss_conf 8567-85589999999999999721798798720215----8989999999808-8-26772889999999707987277
Q T0515 4 TPYY-LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYM-D-GTTSSSLFEVRLGRERFGKETHA 76 (365)
Q Consensus 4 TP~~-v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g-~-g~dv~S~~El~~a~~~~~~~~i~ 76 (365)
-|.| -+|+++|++|++.+++..+ +.+++-.|||| -...|.+.+.+.| + +|-|++..|....++.+.+..++
T Consensus 8 R~t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~gg~d~faVa~ieEA~~LR~~g~~~~Il 85 (395)
T 3hur_A 8 RPTWVSVDLDAAAHNLQEIREWTK--AKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLPIW 85 (395)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHHT--CSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSCEE
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCEEE
T ss_conf 998999859999999999995689--985999995622658889999999987899999992899999999669998399
Q ss_pred ECCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHH---HHH----
Q ss_conf 0477886689999972880021898999999997258871131156777455434466788710131489---999----
Q T0515 77 YSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV---PKV---- 149 (365)
Q Consensus 77 ~~~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~---~~~---- 149 (365)
......++++..++++++..++.|.++++.+.+..+ .+++.+.++.+.+ ++|+... +.+
T Consensus 86 vl~~~~~~e~~~~~~~~i~~~i~~~~~l~~~~~~~~----~~~vhLkiDTGM~----------RlG~~~~e~~~~~~~~~ 151 (395)
T 3hur_A 86 VLGAWDYSDLKLFIDHDIVITIPSLAWLQNLPDFEG----TLKVSLAIDTGMT----------RIGFDKADEISAAKKII 151 (395)
T ss_dssp ESSCCCGGGHHHHHHTTEEEEECCHHHHHTCCCCSS----CEEEEEEBCCSSC----------SSSBCCHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC----CCEEEEEEECCCC----------CCCCCHHHHHHHHHHHH
T ss_conf 837899799999987443233226887545553168----7359999807888----------78888588899999999
Q ss_pred HH-HHCCCEEEEEEECCCCC-CHH---HHHHHHHHHHHHHHHHCCCCCEEEECCCCCC------CCCCCCHHHHHHHHHH
Q ss_conf 99-73690489985067876-779---9999999999999984456516650477789------8889788999999999
Q T0515 150 ER-VMDRINGFMIHNNCENK-DFG---LFDRMLGEIEERFGALIARVDWVSLGGGIHF------TGDDYPVDAFSARLRA 218 (365)
Q Consensus 150 ~~-~~~~i~Gih~H~gs~~~-~~~---~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~------~~~~~~~~~~~~~i~~ 218 (365)
.. ....+.|+..|..+-.. +.. ...+.+..+.+...+.+.+...+.++.-... +-..+++ +|.
T Consensus 152 ~~~~~l~l~Gi~SHla~ad~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~h~~nSa~~l~~~~~p~~~~d~------vR~ 225 (395)
T 3hur_A 152 DKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAA------IRP 225 (395)
T ss_dssp HHCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSE------ECC
T ss_pred HHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCHHCCCE------EEE
T ss_conf 85788648999885266663454016899999999999998538874204423413355225770203634------750
Q ss_pred HHHCCCEE-----EEEECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCC
Q ss_conf 86126608-----9997162001055089999997404----------------77469998265431024201024532
Q T0515 219 FSDRYGVQ-----IYLEPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETA 277 (365)
Q Consensus 219 ~~~~~~~~-----l~~EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~ 277 (365)
=..-++.. .- .+-..-..++..+-++|+.++. ++...+++..|+.+.+.+.+... ..
T Consensus 226 Gi~lYG~~~~~~~~~-~~~~~~l~pv~sl~a~Ii~i~~~~~G~~vGYg~~~~~~~~~~ia~v~iGYaDG~~r~l~~~-~V 303 (395)
T 3hur_A 226 GQLISGVNVSNGELK-MPPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQKS-SV 303 (395)
T ss_dssp CGGGGTCCTTTTSSC-CCTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGGGEEEE-EE
T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCHHHHEEEEEEEEEECCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCC-EE
T ss_conf 220147666732224-5654444531220001103687258986973674026776158973465566742004798-89
Q ss_pred CCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 337799943799970666876354304538988977789982788
Q T0515 278 KVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA 322 (365)
Q Consensus 278 ~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G 322 (365)
.. ..+.+.|.|.+| +|.+.-+.. .++++||.+.+....
T Consensus 304 -li---~G~~~pivGris--MD~~~vDvt-~~~~vGD~V~l~G~~ 341 (395)
T 3hur_A 304 -II---NGKRMPIIGRIT--MDQTMVKLD-RKYPIGTRVTLIGKD 341 (395)
T ss_dssp -EE---TTEEEEBCSCCC--SSCEEEECS-SCCCTTCEEEEEESS
T ss_pred -EE---CCEEEEEEEEEC--CCEEEEECC-CCCCCCCEEEEEECC
T ss_conf -99---999988874883--452899898-999999999999489
No 26
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.57 E-value=1e-11 Score=93.00 Aligned_cols=283 Identities=14% Similarity=0.087 Sum_probs=173.2
Q ss_pred EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 85589999999999999721798798720215----89899999998088-26772889999999707987277047788
Q T0515 8 LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSVAYG 82 (365)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~~k~ 82 (365)
-+|+++|++|++.+++..+ +.+++--|||| -...|.+++.++|+ +|-|++..|....++.|....++....-.
T Consensus 7 ~IdL~ai~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Il~l~~~~ 84 (361)
T 2dy3_A 7 KIDLDAIAHNTRVLKQMAG--PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWIWTP 84 (361)
T ss_dssp EECHHHHHHHHHHHHHHHT--TSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECCCCT
T ss_pred EEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9879999999999984579--98399999655364789999999998695999984299999999708999768745898
Q ss_pred HHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHH---HH----HHCC
Q ss_conf 6689999972880021898999999997258871131156777455434466788710131489999---99----7369
Q T0515 83 DNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKV---ER----VMDR 155 (365)
Q Consensus 83 ~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~---~~----~~~~ 155 (365)
+++++.+++++..+.+-|..+++.+.+... ..+++.+.++.+.+ ++|+...+.. .. ....
T Consensus 85 ~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~---~~~~vhLkiDTGM~----------RlG~~~~e~~~~~~~~~~~~~l~ 151 (361)
T 2dy3_A 85 EQDFRAAIDRNIDLAVISPAHAKALIETDA---EHIRVSIKIDSGLH----------RSGVDEQEWEGVFSALAAAPHIE 151 (361)
T ss_dssp TSCHHHHHTTTCEEEECSHHHHHHHHTSCC---SCEEEEEEBCCSSC----------SSSBCHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHCEEEEEEHHHHHHHHHHHCC---CCCEEEEEECCCCC----------CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 589999875030235532888889998617---88549999768997----------67889899998888887534752
Q ss_pred CEEEEEEECCCC-CCHHHHHHHHHHHHHHH---HHHCCC-------------------CCEEEECCCCCCCCCCCCHHHH
Q ss_conf 048998506787-67799999999999999---984456-------------------5166504777898889788999
Q T0515 156 INGFMIHNNCEN-KDFGLFDRMLGEIEERF---GALIAR-------------------VDWVSLGGGIHFTGDDYPVDAF 212 (365)
Q Consensus 156 i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~---~~~~~~-------------------~~~idiGGG~~~~~~~~~~~~~ 212 (365)
+.|+..|..+-. .+.....+.++++.+.+ .+.+.. .+++-.|-++-. +.+.+
T Consensus 152 ~~gi~TH~a~ad~~d~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lYG-~~p~~---- 226 (361)
T 2dy3_A 152 VTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYG-LEPVA---- 226 (361)
T ss_dssp EEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGT-CCSST----
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCHHCCCCCCCCEEEEC-CCCCC----
T ss_conf 5778987415786430369999999999999877527875055551446766493210671334547864-67864----
Q ss_pred HHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCC
Q ss_conf 999999861266089997162001055089999997404----------------7746999826543102420102453
Q T0515 213 SARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRET 276 (365)
Q Consensus 213 ~~~i~~~~~~~~~~l~~EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~ 276 (365)
+ .++ -..++..+-++|+.+|. ++...+++..|+...+.+.+.....
T Consensus 227 -----------~----~~~---~l~pv~~l~a~ii~i~~~~~G~~vgYg~~~~a~~~~~iavi~iGYaDG~~r~~~~~~~ 288 (361)
T 2dy3_A 227 -----------G----LEH---GLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFS 288 (361)
T ss_dssp -----------T----CCC---SCCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGGTTTCE
T ss_pred -----------C----CCC---CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf -----------4----323---3676402131300357614898656565422467715999722135675432589837
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCEEECCCC-CC-CCCCCCEEEEECCCHHH-HHHHCCCCC
Q ss_conf 233779994379997066687635430453-89-88977789982788455-132136788
Q T0515 277 AKVLPNEGSHSYMICGKSCLAGDVFGEFRF-AE-ELKVGDRISFQDAAGYT-MVKKNWFNG 334 (365)
Q Consensus 277 ~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~-lp-~l~~GD~l~~~~~GAY~-~~~~s~fn~ 334 (365)
..+ ..+.+.|.|.+| +|.+.-+.. .| ++++||.+.+..-...+ ..++.+.+.
T Consensus 289 V~i----~g~~~pivG~is--MD~~~vDvt~~~~~v~~Gd~V~l~G~~~~~~~~~a~~~~t 343 (361)
T 2dy3_A 289 VTI----DGLDYPQVGRVC--MDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDT 343 (361)
T ss_dssp EEE----TTEEEEEESCCC--SSCEEEEEETCTTCCCTTCEEEEESTTSCCHHHHHHHTTS
T ss_pred EEE----CCEEEEEEEEEC--CCEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 999----999903872864--7648998668845589999999978999999999998789
No 27
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=98.46 E-value=7.6e-06 Score=55.37 Aligned_cols=210 Identities=18% Similarity=0.115 Sum_probs=120.9
Q ss_pred CCCCEEEECHH---HHHHHHHHHHHHHH---------CCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHH
Q ss_conf 88856785589---99999999999972---------179879872021589899999998088-267728899999997
Q T0515 2 IETPYYLIDKA---KLTRNMERIAHVRE---------KSGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRE 68 (365)
Q Consensus 2 ~gTP~~v~d~~---~i~~n~~~~~~~~~---------~~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~ 68 (365)
..||..++|.. .|++|++++++-.. ..++++.--+|+.+.+.| ..+.+.|+ +|-++-..|+.....
T Consensus 10 ~~~~~~~~d~~~~~~i~~nl~~v~~ri~~a~~~agR~p~~v~L~aVvK~h~~~~v-a~a~~~G~~~fg~a~vqEa~~k~~ 88 (282)
T 3cpg_A 10 KNLANEVIDDARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEI-MAAIDAGVRMIGENRPQEVTAKAE 88 (282)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHH-HHHHHTTCCCEEESCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 4431000587889999999999999999999981999011699999789899999-999986982111004999999999
Q ss_pred C-------------------CC-CCCE---EECCCCCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 0-------------------79-8727---7047788668999997288-002189899999999725887113115677
Q T0515 69 R-------------------FG-KETH---AYSVAYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQV 124 (365)
Q Consensus 69 ~-------------------~~-~~~i---~~~~~k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~~~v~iRi~p~~ 124 (365)
. +. ..++ +.++. ..+.+..++.... ..++||++.++.+.+.+......++|.+.+
T Consensus 89 ~l~~~~~~a~~~~~~~lr~~~~~~~~i~~~~ig~~-q~~~~~~~~~~~~~~~sVds~~~a~~l~~~a~~~~~~~~V~l~V 167 (282)
T 3cpg_A 89 GLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQL-QSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEV 167 (282)
T ss_dssp HHHHHHHHTTEEECCC------CCEEECEEECSCC-CGGGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEB
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 76664322100000000012345760576047746-67899999874580655698999999999999769985389998
Q ss_pred CCCCCCCCCCCCCCHHCCCC---HHHHHHH----HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HHHHC----CC
Q ss_conf 74554344667887101314---8999999----73690489985067876779999999999999---99844----56
Q T0515 125 SSSSFDLADPARPFSRLGEW---DVPKVER----VMDRINGFMIHNNCENKDFGLFDRMLGEIEER---FGALI----AR 190 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~kfg~~---~~~~~~~----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~---~~~~~----~~ 190 (365)
+.+... .+.+.+ ..+.+.. .++.+.|+..|.++ ..+++...+.++.+.+. +.+.+ ..
T Consensus 168 dtG~~~--------~~~~~~~~e~~~~~~~i~~~~~l~~~GlmTH~a~-add~~~~~~~f~~l~~~~~~l~~~~~~~~~~ 238 (282)
T 3cpg_A 168 NESGEE--------SKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAH-VHDETVIRRGFSHLRKTRDLILASGEPGTDR 238 (282)
T ss_dssp CCSSCT--------TSSSBCGGGHHHHHHHHHTCTTEEEEEEECCCCC-SSCHHHHHHHHHHHHHHHHHHHHHCCTTCTT
T ss_pred ECCCCC--------CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 048987--------6689999999999999997799985458850487-7885779999999999999999818997688
Q ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEC
Q ss_conf 516650477789888978899999999986126608999716200105
Q T0515 191 VDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASITK 238 (365)
Q Consensus 191 ~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ 238 (365)
+..+..|. . .| ++ ..+ +.+.+ ++=||.+|-++
T Consensus 239 ~~~lSmGm--S---~d--~~---~AI-----~~G~t-~VRiG~~lfG~ 270 (282)
T 3cpg_A 239 CRELSMGM--T---GD--ME---LAI-----AEGST-IVRVGTAIFGE 270 (282)
T ss_dssp CCEEECCC--T---TT--HH---HHH-----HTTCS-EEEESTTTC--
T ss_pred CCEECCCC--C---CC--HH---HHH-----HCCCC-EEECCCCCCCC
T ss_conf 89754886--6---00--99---999-----86999-89828510128
No 28
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=93.07 E-value=0.39 Score=25.11 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHHHHC-----------CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCC--E
Q ss_conf 589999999999999721-----------79879872021589899999998088-267728899999997079872--7
Q T0515 10 DKAKLTRNMERIAHVREK-----------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKET--H 75 (365)
Q Consensus 10 d~~~i~~n~~~~~~~~~~-----------~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~--i 75 (365)
..+.|..|++.+++-... ..+++.-..|+-|...| +.+.+.|. .|..+-..|+..-....++++ .
T Consensus 10 ~~~~l~~~~~~v~~~i~~a~~~~~~~r~~~~v~L~aVsK~~~~~~i-~~~~~~G~~~fGEnrvQE~~~K~~~l~~~~~wH 88 (256)
T 1ct5_A 10 RKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDI-QILYDHGVREFGENYVQELIEKAKLLPDDIKWH 88 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHH-HHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEE
T ss_conf 6999999999999999999987148999576699999799899999-999985996011245999999998737895598
Q ss_pred EECCCCCHHHHHHHHHCC-CE--ECCCCHHHHHHHHHHHCC-------CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCH
Q ss_conf 704778866899999728-80--021898999999997258-------87113115677745543446678871013148
Q T0515 76 AYSVAYGDNEIDEVVSHA-DK--IIFNSISQLERFADKAAG-------IARGLRLNPQVSSSSFDLADPARPFSRLGEWD 145 (365)
Q Consensus 76 ~~~~~k~~~~i~~a~~~g-~~--i~iDs~~el~~i~~~~~~-------~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~ 145 (365)
|.| ..-.+.++.++... +. =++||+..++.+.+.+.. ..+.+-||.. +..+|.|+..
T Consensus 89 ~IG-~LQ~NKvk~~~~~~~~~~IhSVDsl~la~~L~~~a~k~~~~~~~~~vlIQVNi~------------~E~sK~G~~~ 155 (256)
T 1ct5_A 89 FIG-GLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTS------------HEDQKSGLNN 155 (256)
T ss_dssp ECS-CCCGGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCS------------SSCCSSSBCC
T ss_pred EEC-CCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC------------CCCCCCCCCC
T ss_conf 878-997500899970112215512354999999999999847877872489999658------------7667789993
Q ss_pred H----HHHHH------HHCCCEEEEEEECC
Q ss_conf 9----99999------73690489985067
Q T0515 146 V----PKVER------VMDRINGFMIHNNC 165 (365)
Q Consensus 146 ~----~~~~~------~~~~i~Gih~H~gs 165 (365)
. ...+. .++++.||..|...
T Consensus 156 ~~~~~~l~e~~~~~~l~~L~l~GLMTi~p~ 185 (256)
T 1ct5_A 156 EAEIFEVIDFFLSEECKYIKLNGLMTIGSW 185 (256)
T ss_dssp HHHHHHHHHHHHSTTCCSEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf 899999999999864878763580541688
No 29
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=92.48 E-value=0.47 Score=24.60 Aligned_cols=176 Identities=15% Similarity=0.036 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHH-HH---HCCCCC--CEEECCCCC
Q ss_conf 9999999999999721--79879872021589899999998088-267728899999-99---707987--277047788
Q T0515 12 AKLTRNMERIAHVREK--SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRL-GR---ERFGKE--THAYSVAYG 82 (365)
Q Consensus 12 ~~i~~n~~~~~~~~~~--~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~-a~---~~~~~~--~i~~~~~k~ 82 (365)
..++++++..-..... ..+++.-..|.-|...| +.+.++|. .|.=.-..|+.. +. ...+++ -+|.|+-=+
T Consensus 9 ~~I~~~I~~a~~~~gR~~~~V~LvaVSK~~~~~~I-~~a~~~G~r~fGENrvQE~~~K~~~l~~~~~~~i~WHfIG~LQs 87 (234)
T 1w8g_A 9 AQVRDKISAAATRCGRSPEEITLLAVSKTKPASAI-AEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQS 87 (234)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCEEEEECTTSCHHHH-HHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEECSCCCG
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 99999999999980999788699999788899999-99998799521006347788888988653045723322134303
Q ss_pred HHHHHHHHHCCCEE-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCH---HHHHHH----HHC
Q ss_conf 66899999728800-2189899999999725887113115677745543446678871013148---999999----736
Q T0515 83 DNEIDEVVSHADKI-IFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWD---VPKVER----VMD 154 (365)
Q Consensus 83 ~~~i~~a~~~g~~i-~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~---~~~~~~----~~~ 154 (365)
+.++.++.+-..| ++||+.-+++|.+.+......++|...+.. .+..+|.|+.. .+.++. .++
T Consensus 88 -NKvk~iv~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVNi--------s~E~~K~G~~p~e~~~~~~~~~~~~~l 158 (234)
T 1w8g_A 88 -NKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINI--------SDENSKSGIQLAELDELAAAVAELPRL 158 (234)
T ss_dssp -GGHHHHHHHCSEEEEECSHHHHHHHHHHSCTTSCCEEEEEEECC--------SCTTCCCSBCGGGHHHHHHHHHTCTTE
T ss_pred -HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE--------CCCCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf -22110000233566654288999998765640676117889830--------466566452211078899875137856
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH---HCCCCCEEEECC
Q ss_conf 90489985067876779999999999999998---445651665047
Q T0515 155 RINGFMIHNNCENKDFGLFDRMLGEIEERFGA---LIARVDWVSLGG 198 (365)
Q Consensus 155 ~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~~~~idiGG 198 (365)
++.|+..- +....+.......+.++.+.+.+ ....+..|.+|=
T Consensus 159 ~~~GLMti-~~~~~d~~~~~~~f~~l~~~~~~l~~~~~~~~~LSMGM 204 (234)
T 1w8g_A 159 RLRGLMAI-PAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGM 204 (234)
T ss_dssp EEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCC
T ss_pred EEEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHH
T ss_conf 78787323-78730378877569999999999872379989776730
No 30
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=73.75 E-value=3.7 Score=18.82 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 3779994379997066687635430453898897778998278845513213678867880899977880899983
Q T0515 279 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE 354 (365)
Q Consensus 279 ~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~ 354 (365)
..+.+...+|.|-|+-= |+.+-...-.-...++||.|++..-+-+......+| .|.++++++++.+.-+|+
T Consensus 25 v~NG~Rf~TYvI~g~~G-Sg~I~lNGAAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vd~~N~i~~i~~ 95 (96)
T 1vc3_B 25 ITNGARLTTYALPGERG-SGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNL----KPTVVLVDERNRILEVRK 95 (96)
T ss_dssp TTTCCEEEEECEEECTT-TTCEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTTC----CCEEEEECTTCCEEEEEE
T ss_pred CCCCCEEEEEEEECCCC-CCEEEECCHHHEECCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEEEC
T ss_conf 98994898799963676-687985585642359999999998774798897268----777999999998998526
No 31
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=70.82 E-value=4.2 Score=18.48 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=42.5
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEECC-CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEE
Q ss_conf 37799943799970666876354304-5389889777899827884551321367886788089997788089
Q T0515 279 VLPNEGSHSYMICGKSCLAGDVFGEF-RFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVR 350 (365)
Q Consensus 279 ~~~~~~~~~~~i~G~~C~~~D~~~~~-~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~ 350 (365)
..+.+...+|.|-|+- |+- ++-+ -.-...++||.|++..-+-+......+| +|.++++++++.+.
T Consensus 24 v~NG~Rf~TYvI~g~~--sg~-I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vd~~N~i~ 89 (97)
T 1uhe_A 24 VNNGERFSTYVILGKK--RGE-ICVNGAAARKVAIGDVVIILAYASMNEDEINAH----KPSIVLVDEKNEIL 89 (97)
T ss_dssp TTTCCEEEEECEEECS--TTC-EEEEGGGGGGCCTTCEEEEEEEEEECHHHHHHC----CCEEEEECTTSCEE
T ss_pred CCCCCEEEEEEEECCC--CCE-EEECCHHHEECCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEE
T ss_conf 9899588879995277--887-986886861259999999998164698998258----87799999999773
No 32
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=69.33 E-value=4.7 Score=18.19 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=49.6
Q ss_pred ECCCCHHHHHHHHHHHCCCCCE-EECCCCCCCCCCCCCCCCCCCHHCCCCH----HHHHHHHHC----CCEEEEEEECCC
Q ss_conf 0218989999999972588711-3115677745543446678871013148----999999736----904899850678
Q T0515 96 IIFNSISQLERFADKAAGIARG-LRLNPQVSSSSFDLADPARPFSRLGEWD----VPKVERVMD----RINGFMIHNNCE 166 (365)
Q Consensus 96 i~iDs~~el~~i~~~~~~~~v~-iRi~p~~~~~~~~~~~~~~~~~kfg~~~----~~~~~~~~~----~i~Gih~H~gs~ 166 (365)
+...|+..+.++.+.....++. .|+.-. ..+.... ..++... .+..+..+. .=.-+.||.|.-
T Consensus 55 ~~~~Nl~dl~~il~~n~~~~I~~yRlSS~----lfP~~s~----~~~~~~~~~~~~~~l~~iG~~ak~~~iRLS~HPgqf 126 (301)
T 2j6v_A 55 KAAENLRDLERILRFNADHGFALFRIGQH----LIPFASH----PLFPYDWEGAYEEELARLGALARAFGQRLSMHPGQY 126 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEECCGG----GSTTTTS----TTCCSCHHHHHHHHHHHHHHHHHHTTCEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCC----CCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 99998999999999999759719984776----4756457----555874689999999999999998092699779986
Q ss_pred ----CCCHHHHHHHHHHH---HHHHHHHCCCCCE--EEECCCC
Q ss_conf ----76779999999999---9999984456516--6504777
Q T0515 167 ----NKDFGLFDRMLGEI---EERFGALIARVDW--VSLGGGI 200 (365)
Q Consensus 167 ----~~~~~~~~~~l~~~---~~~~~~~~~~~~~--idiGGG~ 200 (365)
..+.+...+.+.++ +.+++.+|..-.. |.+||..
T Consensus 127 ~vL~S~~~~Vve~SI~dL~~Ha~l~d~mG~~~~~inIH~gg~y 169 (301)
T 2j6v_A 127 VNPGSPDPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAY 169 (301)
T ss_dssp CCTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCT
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 3016998899999999999999999980687665588605766
No 33
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=68.96 E-value=4.8 Score=18.14 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=62.9
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC---EEE----ECHHHHHHH---HHCCCCCCEEECCCCCHHHHHHHH
Q ss_conf 9999721798798720215898999999980882---677----288999999---970798727704778866899999
Q T0515 21 IAHVREKSGAKALLALKCFATWSVFDLMRDYMDG---TTS----SSLFEVRLG---RERFGKETHAYSVAYGDNEIDEVV 90 (365)
Q Consensus 21 ~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g---~dv----~S~~El~~a---~~~~~~~~i~~~~~k~~~~i~~a~ 90 (365)
+|+.+..-...+-.-+ .-++|.+.+.+...|+- +|. -+..++... .+..+...++.-|...+..+..++
T Consensus 30 ~k~~L~~G~~~~G~~~-~~~sp~~~Ei~a~~GfDfv~ID~EHg~~~~~~~~~~i~a~~~~~~~~iVRvp~~~~~~i~r~L 108 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWL-GLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLL 108 (287)
T ss_dssp HHHHHHTTCCEEEEEE-CSCCHHHHHHHHTSCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEE-CCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 9999987998799875-789969999997389799998067799999999999998743599606546889999999998
Q ss_pred HCCCE-E---CCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 72880-0---21898999999997258871131
Q T0515 91 SHADK-I---IFNSISQLERFADKAAGIARGLR 119 (365)
Q Consensus 91 ~~g~~-i---~iDs~~el~~i~~~~~~~~v~iR 119 (365)
+.|+. | .++|.+|.+.+.+.++=.+.+.|
T Consensus 109 D~Ga~GIivP~V~t~eea~~~v~a~rypP~G~R 141 (287)
T 2v5j_A 109 DVGTQTLLVPMVQNADEAREAVRATRYPPAGIR 141 (287)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHHTSCTTTSCC
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 379986794674999999999982647999999
No 34
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=68.75 E-value=4.8 Score=18.11 Aligned_cols=183 Identities=7% Similarity=-0.087 Sum_probs=98.2
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC---EEE----ECHHHHHHHH---HCCCCCCEEECCCCCHHHHHHH
Q ss_conf 99999721798798720215898999999980882---677----2889999999---7079872770477886689999
Q T0515 20 RIAHVREKSGAKALLALKCFATWSVFDLMRDYMDG---TTS----SSLFEVRLGR---ERFGKETHAYSVAYGDNEIDEV 89 (365)
Q Consensus 20 ~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g---~dv----~S~~El~~a~---~~~~~~~i~~~~~k~~~~i~~a 89 (365)
++|+.+..-...+-.-+. -++|.+.+.+...|.- +|. .+..++.... +..+...++.-|.-.+..+..+
T Consensus 9 ~~k~~L~~g~~~~G~~~~-~~sp~~~e~~a~~G~D~v~iD~EH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 9 KFKAALAAKQVQIGCWSA-LSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHHTTCCEEEEEEC-SCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 999999789964988767-8998999999816999999806889999999999999997469975997899983799999
Q ss_pred HHCCCE-E---CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEEEEECC
Q ss_conf 972880-0---218989999999972588711311567774554344667887101314899999973690489985067
Q T0515 90 VSHADK-I---IFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRINGFMIHNNC 165 (365)
Q Consensus 90 ~~~g~~-i---~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~i~Gih~H~gs 165 (365)
++.|+. + .++|.+|++++.+.++-.+.+.|-.. .......+|.. .+.......++. +.-
T Consensus 88 LD~Ga~gi~vP~V~sae~a~~~v~~~~ypP~G~Rg~~-----------~~~~a~~~g~~-~~y~~~an~~~~-----vi~ 150 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVS-----------VSHRANMFGTV-ADYFAQSNKNIT-----ILV 150 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCC-----------SSSGGGGGGTS-TTHHHHHTTSCE-----EEE
T ss_pred HHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----------CCHHHHHCCCH-HHHHHHCCCCCE-----EEE
T ss_conf 8559887664654889999999998157999866766-----------20233303862-789986064766-----999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC-------CCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 8767799999999999999984456516650477-------789888978899999999986126608
Q T0515 166 ENKDFGLFDRMLGEIEERFGALIARVDWVSLGGG-------IHFTGDDYPVDAFSARLRAFSDRYGVQ 226 (365)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG-------~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (365)
++++++.... +.+++. -+-++.|-+|-+ .+..+.+..+....+.+.+.+++.+..
T Consensus 151 ~IEt~~av~n----~~eI~a--v~gvD~l~iG~~DLs~slG~~~~~~~p~v~~ai~~i~~a~~~~G~~ 212 (256)
T 1dxe_A 151 QIESQQGVDN----VDAIAA--TEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKP 212 (256)
T ss_dssp EECSHHHHHT----HHHHHT--STTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCHHHHHH----HHHHHC--CCCCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 9777999995----999956--8777779986206888736677778878999999999999984994
No 35
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=65.03 E-value=5.7 Score=17.65 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=99.4
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCE---EE----ECHHHHHHH---HHCCCCCCEEECCCCCHHHHHHHH
Q ss_conf 99997217987987202158989999999808826---77----288999999---970798727704778866899999
Q T0515 21 IAHVREKSGAKALLALKCFATWSVFDLMRDYMDGT---TS----SSLFEVRLG---RERFGKETHAYSVAYGDNEIDEVV 90 (365)
Q Consensus 21 ~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~---dv----~S~~El~~a---~~~~~~~~i~~~~~k~~~~i~~a~ 90 (365)
+|+.+..-...+-.-+ .-++|.+.+.+...|.-+ |. -+..++... ....+...++.-|...+..+..++
T Consensus 9 lk~~L~~g~~~~G~~~-~~~sp~~~e~l~~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~~vRvp~~~~~~i~r~L 87 (267)
T 2vws_A 9 FKERLRKGEVQIGLWL-SSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVL 87 (267)
T ss_dssp HHHHHHTTCCEEEEEE-CSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEE-CCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH
T ss_conf 9999987998799986-899979999998389899998067898989999999998614699746881578679999998
Q ss_pred HCCCE-E---CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 72880-0---2189899999999725887113115677745543446678871013148999999736904899850678
Q T0515 91 SHADK-I---IFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRINGFMIHNNCE 166 (365)
Q Consensus 91 ~~g~~-i---~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~i~Gih~H~gs~ 166 (365)
+.|+. | .++|.+|.+++.+.++=.+.+-|= +....... .++....+..+....++.-+ .|
T Consensus 88 D~Ga~GIivP~v~s~eea~~~v~~~rypP~G~Rg---~g~~~~~~--------~~~~~~~~y~~~~n~~~~~i-----~q 151 (267)
T 2vws_A 88 DIGAQTLLIPMVDTAEQARQVVSATRYPPYGERG---VGASVARA--------ARWGRIENYMAQVNDSLCLL-----VQ 151 (267)
T ss_dssp HTTCCEEEECCCCSHHHHHHHHHHTSCTTTSCCC---SCGGGSGG--------GGGGTSTTHHHHHHHHCEEE-----EE
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCC---CCCCCCCC--------CCCCCHHHHHHHHHHHCCEE-----EE
T ss_conf 3899889989808889999999843279999999---98764210--------14675578999998630000-----01
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC-------CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76779999999999999998445651665047-------77898889788999999999861266089997
Q T0515 167 NKDFGLFDRMLGEIEERFGALIARVDWVSLGG-------GIHFTGDDYPVDAFSARLRAFSDRYGVQIYLE 230 (365)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGG-------G~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~E 230 (365)
+++.+.... +.++..- +-++.|=+|- |+|..+.+..+....+.+.+.+++++..+-+-
T Consensus 152 IEt~~av~n----leeI~av--~GvD~i~iGp~DLs~slG~pg~~~~p~~~~ai~~v~~~~~~~gk~~G~~ 216 (267)
T 2vws_A 152 VESKTALDN----LDEILDV--EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL 216 (267)
T ss_dssp CCSHHHHHT----HHHHHTS--TTCCEEEECHHHHHHHTTCSSSCCTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHH----HHHHHCC--CCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 067899997----9987456--8985356771788873399988898159999999999999879976763
No 36
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A
Probab=63.65 E-value=6.1 Score=17.48 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=45.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 3779994379997066687635430453898897778998278845513213678867880899977880899983
Q T0515 279 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE 354 (365)
Q Consensus 279 ~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~ 354 (365)
..+.+...+|.|-|+-= |+.+-...-.-...++||.|+|..-+-+......+| .|.++++++++.+.-+++
T Consensus 66 v~NG~Rf~TYvI~g~~g-Sg~I~lNGAAAr~~~~GD~vII~sYa~~~~~e~~~~----~P~vv~vde~N~i~~~~~ 136 (143)
T 1pqh_A 66 VTNGKRFSTYAIAAERG-SRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTW----RPNVAYFEGDNEMKRTAK 136 (143)
T ss_dssp TTTCCEEEEEEEEECTT-CCCEECCGGGGGTCCTTCEEEEEEEEEEEHHHHTTC----CCEEEEEETTTEECC---
T ss_pred CCCCCEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEECC
T ss_conf 99997799999963588-875874688885479999999998865896685278----766999999998868336
No 37
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=63.03 E-value=6.2 Score=17.41 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 3779994379997066687635430453898897778998278845513213678867880899977880899983
Q T0515 279 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE 354 (365)
Q Consensus 279 ~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~ 354 (365)
..+.+...+|.|-|+-- |+.+-...-.-...++||.|+|..-+-+......+| .|.++++++++.+--++.
T Consensus 49 v~NG~Rf~TYvI~g~~G-Sg~I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vd~~N~i~~~~~ 119 (139)
T 2c45_A 49 IDNGARLVTYAITGERG-SGVIGINGAAAHLVHPGDLVILIAYATMDDARARTY----QPRIVFVDAYNKPIDMGH 119 (139)
T ss_dssp TTTCCEEEECEEEECTT-TTCEEEESSTTTTSCTTCEEEEEECCEEEHHHHHSC----CCEEEECCTTCC------
T ss_pred CCCCCEEEEEEEECCCC-CCEEEECCHHHEECCCCCEEEEEEECCCCHHHHHCC----CCEEEEECCCCCEEEECC
T ss_conf 67994888789865789-744875483440348899999998053698997168----777999899998878457
No 38
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=58.77 E-value=7.4 Score=16.94 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=32.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 899850678767799999999999999984456516650477789888978899999999986126608999
Q T0515 158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYL 229 (365)
Q Consensus 158 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 229 (365)
++++|.++|. +...+..++.+.. +.+...++..-++||||+...........+..+....-..+++++.
T Consensus 759 ~l~v~~sTQ~--p~~~r~~iA~~Lg-lp~~~VrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVklv~ 827 (1332)
T 1v97_A 759 EMELFVSTQN--AMKTQSFVAKMLG-VPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCML 827 (1332)
T ss_dssp CEEEEECCSC--HHHHHHHHHHHHT-SCGGGEEEEECCCSCCTTTTSSTTHHHHHHHHHHHHHHSSCEEEEC
T ss_pred EEEEEECCCC--HHHHHHHHHHHHC-CCHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6999989957--9999999999978-9889989990887717888887660999999999998399989997
No 39
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomics, PSI, protein structure initiative; 1.57A {Enterococcus faecalis V583} SCOP: b.161.1.1
Probab=57.45 E-value=7.6 Score=16.84 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCCCEEECCCCCCCCCCCCEEEEECCCH
Q ss_conf 68763543045389889777899827884
Q T0515 295 CLAGDVFGEFRFAEELKVGDRISFQDAAG 323 (365)
Q Consensus 295 C~~~D~~~~~~~lp~l~~GD~l~~~~~GA 323 (365)
|.++.+......+|++++||.|.|..-||
T Consensus 101 ~lpG~I~v~~~~~P~i~vG~~I~ii~~~~ 129 (129)
T 2f9h_A 101 VIRNGVYLTPHQLPKITIGTTIDYLVNGA 129 (129)
T ss_dssp SCTTEEEEESCSCCCCCTTCEEEEEC---
T ss_pred CCCCEEEECCCCCCCCCCCCEEEEEECCC
T ss_conf 77986998788899788999999996789
No 40
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=52.80 E-value=9.2 Score=16.32 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=35.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 899850678767799999999999999984456516650477789888978899999999986126608999
Q T0515 158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYL 229 (365)
Q Consensus 158 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 229 (365)
.+++|.+||. +......+..+.. +.+...++..-.+||||+......+....+..+...+. .+++++.
T Consensus 206 ~l~v~~~tQ~--p~~~~~~vA~~lg-lp~~~V~V~~~~~GGgFG~K~~~~~~~~~aa~aa~~~g-rPVk~~~ 273 (769)
T 1rm6_A 206 MLTLNTTTQV--PYYVHLKVAACLQ-MDSARIRVIKPFLGGGFGARTEALHFEIIAGLLARKAK-GTVRLLQ 273 (769)
T ss_dssp EEEEEECCSC--HHHHHHHHHHHHT-CCGGGEEEECCBCCCCTTTTSSCCHHHHHHHHHHHHHT-SEEEEEC
T ss_pred EEEEECCCCC--CHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCC-CCCEEEC
T ss_conf 0467235677--1888876544311-14541499703332122055555516666666662169-9844201
No 41
>1izc_A Macrophomate synthase intermolecular diels- alderase; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=50.61 E-value=9.9 Score=16.10 Aligned_cols=100 Identities=6% Similarity=-0.005 Sum_probs=62.5
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCE---EE----ECHHHHHH---HHH-CC--CCCCEEECCCCCHHHHH
Q ss_conf 99997217987987202158989999999808826---77----28899999---997-07--98727704778866899
Q T0515 21 IAHVREKSGAKALLALKCFATWSVFDLMRDYMDGT---TS----SSLFEVRL---GRE-RF--GKETHAYSVAYGDNEID 87 (365)
Q Consensus 21 ~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~---dv----~S~~El~~---a~~-~~--~~~~i~~~~~k~~~~i~ 87 (365)
+|+++..++-.++=..=.-|++.+.+++...|.-+ |. .+..++.. +.+ .+ ....++.-|...+..+.
T Consensus 32 l~~~~~~~~~~~~G~~~~~ps~~~ae~~a~~G~D~v~iD~EHg~~~~~~l~~~i~a~~~~~~~~~~~iVRvp~~~~~~i~ 111 (339)
T 1izc_A 32 LKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLS 111 (339)
T ss_dssp HHHHHHCGGGCEEEEEECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHH
T ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf 99987557984898731589969999997699899998578899999999999999998478998618848988879999
Q ss_pred HHHHCCCE-E---CCCCHHHHHHHHHHHCCCCCEEEC
Q ss_conf 99972880-0---218989999999972588711311
Q T0515 88 EVVSHADK-I---IFNSISQLERFADKAAGIARGLRL 120 (365)
Q Consensus 88 ~a~~~g~~-i---~iDs~~el~~i~~~~~~~~v~iRi 120 (365)
.+++.|+. | .|+|.+|.+++.+.++=.+.+.|=
T Consensus 112 ~~LD~Ga~GIivP~V~s~eeA~~~V~a~rypP~G~Rg 148 (339)
T 1izc_A 112 TALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRS 148 (339)
T ss_dssp HHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCC
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 9971799989977869999999999974028888867
No 42
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=49.89 E-value=10 Score=16.03 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=32.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 89985067876779999999999999998445651665047778988897889999999998612660899
Q T0515 158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIY 228 (365)
Q Consensus 158 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 228 (365)
.++++.++|. +......+.++.. +.....++..-.+||||+..... .....+..+.......+++++
T Consensus 229 ~l~v~~~tQ~--p~~~~~~iA~~lg-lp~~~V~V~~~~~GGgFG~K~~~-~~~~~~a~~aa~~~grPVkl~ 295 (803)
T 1ffv_B 229 DLTTYITSQA--PHVVRTVVSMLSG-IPESKVRIVSPDIGGGFGNKVGI-YPGYVCAIVASIVLGRPVKWV 295 (803)
T ss_dssp EEEEEECCSC--HHHHHHHHHHHHC-CCGGGEEEECCCCSCCTTTTSSC-CHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEECCCC--HHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEE
T ss_conf 7999957622--1134433333315-78724899956635768888765-369999999998518986998
No 43
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=49.05 E-value=11 Score=15.94 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=5.0
Q ss_pred EECCCCCCCCC
Q ss_conf 50477789888
Q T0515 195 SLGGGIHFTGD 205 (365)
Q Consensus 195 diGGG~~~~~~ 205 (365)
++||||+....
T Consensus 223 ~~GGgFG~k~~ 233 (777)
T 2w3s_B 223 RMGGGFGGKES 233 (777)
T ss_dssp CCSCCTTTTTT
T ss_pred CCCCCCCCCCC
T ss_conf 65567787655
No 44
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=46.30 E-value=12 Score=15.67 Aligned_cols=82 Identities=15% Similarity=-0.012 Sum_probs=39.9
Q ss_pred HHHHCCCEEEEEEECCCCCCHHHHHHHHHHH---HHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH---HHHCC
Q ss_conf 9973690489985067876779999999999---99999844565166504777898889788999999999---86126
Q T0515 150 ERVMDRINGFMIHNNCENKDFGLFDRMLGEI---EERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRA---FSDRY 223 (365)
Q Consensus 150 ~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~---~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~---~~~~~ 223 (365)
...+..+.+++.+..-...+.+...+.++.+ .+...+++.+.=.+.-|+.......+.......+.+++ +.+++
T Consensus 56 ~~~gl~~~s~~~~~~~~~~~~~~~~~~~~~~k~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 135 (278)
T 1i60_A 56 QTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPY 135 (278)
T ss_dssp HTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98199389996777778999899999999999999999982939899926988777787999999999999999999974
Q ss_pred CEEEEEEC
Q ss_conf 60899971
Q T0515 224 GVQIYLEP 231 (365)
Q Consensus 224 ~~~l~~Ep 231 (365)
++++.+||
T Consensus 136 gi~l~iE~ 143 (278)
T 1i60_A 136 GVKIALEF 143 (278)
T ss_dssp TCEEEEEC
T ss_pred CCEEEEEE
T ss_conf 99899983
No 45
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=38.92 E-value=13 Score=15.42 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=18.2
Q ss_pred CCCCCEEEEEECCCEEEEEEECCHHHHHHHC
Q ss_conf 8678808999778808999836879998734
Q T0515 334 GVKMPAIAIRELDGSVRTVREFTYADYEQSL 364 (365)
Q Consensus 334 ~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~~ 364 (365)
..+.|-.+++++||.. -..||||++|
T Consensus 68 ~i~~~~~lvLeeDGT~-----VddEeYF~tL 93 (122)
T 1d4b_A 68 LLNGVLTLVLEEDGTA-----VDSEDFFQLL 93 (122)
T ss_dssp SCCSSCEEEETTTTEE-----ECSTHHHHHS
T ss_pred CCCCCEEEEEECCCCE-----ECCHHHHHCC
T ss_conf 9998708999479979-----8558888417
No 46
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=37.64 E-value=16 Score=14.82 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 9999997369048998506787677999999999999
Q T0515 146 VPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEE 182 (365)
Q Consensus 146 ~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~ 182 (365)
.+.+...+..-..+-+-.|-.....+.|.+.++.+.+
T Consensus 195 i~~~r~~g~~~i~~DlIyGlPgqT~e~~~~tl~~~~~ 231 (457)
T 1olt_A 195 LNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231 (457)
T ss_dssp HHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999984255340340477998426778999999984
No 47
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=37.42 E-value=15 Score=15.03 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=12.8
Q ss_pred CCCCCCCCCCEEEEEC
Q ss_conf 5389889777899827
Q T0515 305 RFAEELKVGDRISFQD 320 (365)
Q Consensus 305 ~~lp~l~~GD~l~~~~ 320 (365)
..+|++++|||+.++-
T Consensus 31 ~lv~~~~vGDyVLVH~ 46 (75)
T 2z1c_A 31 DLMPDTKPGDWVIVHT 46 (75)
T ss_dssp TTSTTCCTTCEEEEET
T ss_pred EEECCCCCCCEEEEEE
T ss_conf 9608999898999941
No 48
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=36.36 E-value=16 Score=14.69 Aligned_cols=60 Identities=7% Similarity=-0.073 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHCCC-CEEEE--CHHHHHH---HHHCCCCCCEEECCCCCHHHHHHHHHCCCEE
Q ss_conf 21589899999998088-26772--8899999---9970798727704778866899999728800
Q T0515 37 KCFATWSVFDLMRDYMD-GTTSS--SLFEVRL---GRERFGKETHAYSVAYGDNEIDEVVSHADKI 96 (365)
Q Consensus 37 KaN~~~~vl~~l~~~g~-g~dv~--S~~El~~---a~~~~~~~~i~~~~~k~~~~i~~a~~~g~~i 96 (365)
+......+.+.+.+.|. .+|+. ++.=++. ..+.+++-.+=.|...+.+.++.+++.|+.+
T Consensus 26 ~~~~a~~~~~al~~~Gi~~iEItl~t~~a~~~i~~l~~~~p~~~vGaGTV~~~e~~~~a~~aGa~F 91 (214)
T 1wbh_A 26 KLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQF 91 (214)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 999999999999987998899947986799999999997798624557445489999999827787
No 49
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=33.00 E-value=19 Score=14.35 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q T0515 12 AKLTRNMERIAH 23 (365)
Q Consensus 12 ~~i~~n~~~~~~ 23 (365)
+.++++++++.+
T Consensus 628 ~~~~~ai~~l~~ 639 (2051)
T 2uv8_G 628 AGMTAAIDSVVS 639 (2051)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999995
No 50
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=32.21 E-value=19 Score=14.27 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=24.5
Q ss_pred EEEEEECCCCCCCEEECCCCCC-CCCCCCEEEEECCC
Q ss_conf 7999706668763543045389-88977789982788
Q T0515 287 SYMICGKSCLAGDVFGEFRFAE-ELKVGDRISFQDAA 322 (365)
Q Consensus 287 ~~~i~G~~C~~~D~~~~~~~lp-~l~~GD~l~~~~~G 322 (365)
-|.|.|.| +..+|-.+...| -+++||.|-|...|
T Consensus 194 GW~iIGrT--p~~lfd~~~~~p~ll~~GD~VrF~~Ig 228 (228)
T 3mml_B 194 GWQLIGHT--DAVMFDVNRDKPALLTPGMWVQFRAVG 228 (228)
T ss_dssp CSEEEEEE--CSCSBCTTSSSSBSCCTTCEEEEEECC
T ss_pred CCEEECCC--CHHHHCCCCCCCCCCCCCCEEEEEECC
T ss_conf 34486625--614208899997135999989999789
No 51
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=30.82 E-value=20 Score=14.12 Aligned_cols=50 Identities=10% Similarity=-0.073 Sum_probs=27.7
Q ss_pred ECHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCEE--CCCCHHHHHHHHH
Q ss_conf 288999999970798727704778866899999728800--2189899999999
Q T0515 58 SSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVSHADKI--IFNSISQLERFAD 109 (365)
Q Consensus 58 ~S~~El~~a~~~~~~~~i~~~~~k~~~~i~~a~~~g~~i--~iDs~~el~~i~~ 109 (365)
-+...++.|...|.+ .+.+|+..++-++.+.++++.+ -+-+++|+.+-.+
T Consensus 71 ~~~~~~~~a~~aGa~--fivsP~~~~~v~~~a~~~~~~~iPGv~TpsEi~~A~~ 122 (205)
T 1wa3_A 71 TSVEQCRKAVESGAE--FIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK 122 (205)
T ss_dssp CSHHHHHHHHHHTCS--EEECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC--EEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHH
T ss_conf 237889999853642--7757999999999998649975166186788999998
No 52
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=29.93 E-value=21 Score=14.03 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHHC
Q ss_conf 213678867880899977880899983-6879998734
Q T0515 328 KKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQSL 364 (365)
Q Consensus 328 ~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~~ 364 (365)
+...|+...-|..++++++|.+..++- -+.+|...++
T Consensus 93 ~~~~~~v~~~P~~~lid~~G~i~~~~g~~~~~~l~~~l 130 (136)
T 1zzo_A 93 VWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV 130 (136)
T ss_dssp HHHHTTCCSSSEEEEECTTCCEEEEESCCCHHHHHHHH
T ss_pred HHHHCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHH
T ss_conf 99984998056799996998499998999999999999
No 53
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=28.09 E-value=22 Score=13.82 Aligned_cols=77 Identities=8% Similarity=-0.068 Sum_probs=44.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCC-CEEEECHH--HH---HHHHHCCCCCCEEECCCCCHHHHHHHHHCCCEECC--CCHHH
Q ss_conf 9872021589899999998088-26772889--99---99997079872770477886689999972880021--89899
Q T0515 32 ALLALKCFATWSVFDLMRDYMD-GTTSSSLF--EV---RLGRERFGKETHAYSVAYGDNEIDEVVSHADKIIF--NSISQ 103 (365)
Q Consensus 32 i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~--El---~~a~~~~~~~~i~~~~~k~~~~i~~a~~~g~~i~i--Ds~~e 103 (365)
+...........+.+++.+.|. -+|+.-.. =+ +..++.+|+-.+=.|...+.+.++.+++.|+.|.+ ..-.|
T Consensus 22 vlr~~~~~~a~~~~~al~~~Gi~~iEITl~t~~a~~~I~~l~~~~p~~~vGaGTVl~~e~~~~a~~aGA~FivSP~~~~~ 101 (224)
T 1vhc_A 22 VIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPK 101 (224)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEECCCCCHH
T ss_conf 99689999999999999987999899967882699999999982898458764036579999999716878778988899
Q ss_pred HHHHH
Q ss_conf 99999
Q T0515 104 LERFA 108 (365)
Q Consensus 104 l~~i~ 108 (365)
+-+..
T Consensus 102 v~~~a 106 (224)
T 1vhc_A 102 IVKLC 106 (224)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 54
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=27.82 E-value=16 Score=14.82 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=19.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 489985067876779999999999999998445651665047
Q T0515 157 NGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGG 198 (365)
Q Consensus 157 ~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGG 198 (365)
.|+++|.+.+..+.+.+.+.++.+..+-..+...+.-+|++.
T Consensus 211 IG~Q~H~~~~~~~~~~i~~~l~~~~~lg~~l~v~ITElDV~~ 252 (348)
T 1w32_A 211 VGFQMHVMNDYPSIANIRQAMQKIVALSPTLKIKITELDVRL 252 (348)
T ss_dssp EEECCEEESSSSCHHHHHHHHHHHHTTCSSCEEEEEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 024631057899999999999999972899716998877626
No 55
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=27.05 E-value=22 Score=13.94 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=11.6
Q ss_pred CCCCCCCCCEEEEEC
Q ss_conf 389889777899827
Q T0515 306 FAEELKVGDRISFQD 320 (365)
Q Consensus 306 ~lp~l~~GD~l~~~~ 320 (365)
..|++++|||+.++-
T Consensus 38 ~~~ev~vGDyVLVH~ 52 (90)
T 2ot2_A 38 ENGQPRVGQWVLVHV 52 (90)
T ss_dssp TTSCBCTTCEEEEET
T ss_pred CCCCCCCCCEEEEEH
T ss_conf 776457688999961
No 56
>3bww_A Protein of unknown function DUF692/COG3220; YP_719350.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Haemophilus somnus 129PT}
Probab=26.43 E-value=11 Score=15.80 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=71.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEECC----CCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 0489985067876779999999999999998445-----651665047----7789888978899999999986126608
Q T0515 156 INGFMIHNNCENKDFGLFDRMLGEIEERFGALIA-----RVDWVSLGG----GIHFTGDDYPVDAFSARLRAFSDRYGVQ 226 (365)
Q Consensus 156 i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~idiGG----G~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (365)
..|+++.+||...-...|.+.++.+ +++..+ ++.+-..+| -+|.+|.+..+...++.++.+-+..+..
T Consensus 59 ~HGv~LSlG~~~~ld~~~L~~l~~l---~~~~~~~~~SeHL~~~~~~g~~~dLLPlP~t~e~l~~v~~ri~~vQd~l~rp 135 (307)
T 3bww_A 59 IHGLSLSLGGQAPLDKELLSSIKAM---IKQYNTPFFSDHLSFCECDGHLYDLLPMPFTDEAVKHTAARIREVQDFLEIQ 135 (307)
T ss_dssp EBCSCCCTTCSSCCCHHHHHHHHHH---HHHTTCCCCEECSCC---------CCCBCCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHH---HHHHCCCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6267505678998899999999999---9987878675001142168754665786765999999999999999986897
Q ss_pred EEEECCCEEEECCEEEEEEEEEE---CCCCCEEEEECCC------CCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99971620010550899999974---0477469998265------43102420102453233779994379997066687
Q T0515 227 IYLEPGEASITKSTTLEVTVLDT---LYNGKNLAIVDSS------IEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLA 297 (365)
Q Consensus 227 l~~EpGR~lva~ag~lit~V~~~---k~~~~~~~i~d~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~ 297 (365)
+.+|--.+.+.....-+++.-.. -++..-.+.+|-+ .|+...++.- +....|-+......|+|.+.+.
T Consensus 136 lllEN~s~Y~~~~~~~m~E~eFl~~l~~~tgcgLLLDvnNvyvna~Nhg~~Dp~~---yL~~lPl~rV~eIHlAG~~~~~ 212 (307)
T 3bww_A 136 ISVENTSYYLHSETSTMNEVEFLNAIVQEANCGIHLDVNNIYVNAVNHGLLDPHV---FIDNVDLKRVNYIHIAGHDDEH 212 (307)
T ss_dssp CEEECCCCSCBCTTCSSCHHHHHHHHHHHHTCEEEEEHHHHHHHHHHHCCSCHHH---HHHHSCGGGEEEEEECC-----
T ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHCCCCCHHH---HHHHCCHHHHHHHHHCCCCCCC
T ss_conf 6995424304788787789999999999609809997015677643068999999---9873899987743331665434
Q ss_pred CC
Q ss_conf 63
Q T0515 298 GD 299 (365)
Q Consensus 298 ~D 299 (365)
..
T Consensus 213 ~~ 214 (307)
T 3bww_A 213 AA 214 (307)
T ss_dssp --
T ss_pred CC
T ss_conf 55
No 57
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, HAD-superfamily hydrolase, putative B-phosphoglucomutase, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=25.15 E-value=25 Score=13.49 Aligned_cols=10 Identities=0% Similarity=0.019 Sum_probs=3.6
Q ss_pred HHHHHHHHCC
Q ss_conf 9999997217
Q T0515 19 ERIAHVREKS 28 (365)
Q Consensus 19 ~~~~~~~~~~ 28 (365)
+.+..++...
T Consensus 24 ~a~~~~~~~~ 33 (229)
T 2fdr_A 24 QVESRLLTEA 33 (229)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
T ss_conf 9999999986
No 58
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=25.05 E-value=26 Score=13.47 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.6
Q ss_pred EEEEEECCCC
Q ss_conf 7987202158
Q T0515 31 KALLALKCFA 40 (365)
Q Consensus 31 ~i~yAvKaN~ 40 (365)
|++|..+++-
T Consensus 894 KPwFG~~~~G 903 (2060)
T 2uva_G 894 KVWFGRNSAG 903 (2060)
T ss_dssp SEETTBCTTS
T ss_pred CCCCCCCCCC
T ss_conf 7774547888
No 59
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=24.54 E-value=26 Score=13.41 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=56.6
Q ss_pred CEEEECHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHCCC-CEEEE--CHHHHHHH---HHCCCCCCEEE
Q ss_conf 56785589999999999999721798-79872021589899999998088-26772--88999999---97079872770
Q T0515 5 PYYLIDKAKLTRNMERIAHVREKSGA-KALLALKCFATWSVFDLMRDYMD-GTTSS--SLFEVRLG---RERFGKETHAY 77 (365)
Q Consensus 5 P~~v~d~~~i~~n~~~~~~~~~~~~~-~i~yAvKaN~~~~vl~~l~~~g~-g~dv~--S~~El~~a---~~~~~~~~i~~ 77 (365)
|-.-++.....+.+..+ +....+ -+...........+.+++.+.|+ -+|+. |+.-++.. ++.+|+-.+=.
T Consensus 6 ~~~~~~m~~~~~~i~~~---~~~~~iipvi~~~~~~~a~~~a~al~~~Gi~~iEitl~tp~a~~~i~~l~~~~p~~~iGa 82 (225)
T 1mxs_A 6 PQPKLSMADKAARIDAI---CEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGA 82 (225)
T ss_dssp ----CCHHHHHHHHHHH---HHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHH---HHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99965688899999999---986987899974999999999999998699889995898049999999997589838976
Q ss_pred CCCCCHHHHHHHHHCCCEECC--CCHHHHHHH
Q ss_conf 477886689999972880021--898999999
Q T0515 78 SVAYGDNEIDEVVSHADKIIF--NSISQLERF 107 (365)
Q Consensus 78 ~~~k~~~~i~~a~~~g~~i~i--Ds~~el~~i 107 (365)
|...+.+.++.+++.|+.+.+ ..-.|+-..
T Consensus 83 GTV~~~~~~~~a~~aGa~FivsP~~~~~v~~~ 114 (225)
T 1mxs_A 83 GTVLDRSMFAAVEAAGAQFVVTPGITEDILEA 114 (225)
T ss_dssp ECCCSHHHHHHHHHHTCSSEECSSCCHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf 51367999999997898199779899999999
No 60
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=21.93 E-value=29 Score=13.09 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCEEEEEEC
Q ss_conf 9999998612660899971
Q T0515 213 SARLRAFSDRYGVQIYLEP 231 (365)
Q Consensus 213 ~~~i~~~~~~~~~~l~~Ep 231 (365)
.+.+++.....++.+++|+
T Consensus 198 ~~~i~~~~~~~g~D~vid~ 216 (325)
T 3jyn_A 198 AKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp HHHHHHHTTTCCEEEEEES
T ss_pred HHHHHHHHCCCCCCEEEEC
T ss_conf 9999997189995389989
No 61
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein structure initiative; HET: MSE; 1.30A {Bacteroides fragilis nctc 9343}
Probab=21.54 E-value=30 Score=13.04 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=30.7
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHC
Q ss_conf 789982788455132136788678808999778808999836879998734
Q T0515 314 DRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL 364 (365)
Q Consensus 314 D~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~~ 364 (365)
++.+..+.+.. ......|+-...|..++++.||.+. .|.-++++....|
T Consensus 92 ~~~~~~d~~~~-~~~~~~~~v~~~P~~~liD~~G~Iv-~~~~~~~~ie~~L 140 (142)
T 3eur_A 92 EWTNGYDKELV-IKNKNLYDLRAIPTLYLLDKNKTVL-LKDATLQKVEQYL 140 (142)
T ss_dssp TSEEEECTTCH-HHHTTCSCCTTCSEEEEECTTCBEE-EEEECHHHHHHHH
T ss_pred CCCEEECCCCC-HHHHHHCCCCCCCEEEEECCCCEEE-EEECCHHHHHHHH
T ss_conf 98566546310-2467762766764699996999899-8629989999986
No 62
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=20.89 E-value=31 Score=12.95 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHCCC-CEEEE
Q ss_conf 89899999998088-26772
Q T0515 40 ATWSVFDLMRDYMD-GTTSS 58 (365)
Q Consensus 40 ~~~~vl~~l~~~g~-g~dv~ 58 (365)
+.+.+++.+++.|. |+|..
T Consensus 16 ~l~e~~~~a~~~G~~gIEl~ 35 (286)
T 3dx5_A 16 SFTDIVQFAYENGFEGIELW 35 (286)
T ss_dssp CHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999998099999982
No 63
>2o18_A Thiamine biosynthesis lipoprotein APBE; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.20A {Escherichia coli}
Probab=20.84 E-value=31 Score=12.95 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=62.1
Q ss_pred CCCHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE----CCCEE--
Q ss_conf 767799999--99999999998445651665047778988---89788999999999861266089997----16200--
Q T0515 167 NKDFGLFDR--MLGEIEERFGALIARVDWVSLGGGIHFTG---DDYPVDAFSARLRAFSDRYGVQIYLE----PGEAS-- 235 (365)
Q Consensus 167 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~idiGGG~~~~~---~~~~~~~~~~~i~~~~~~~~~~l~~E----pGR~l-- 235 (365)
..|+....| +++.+.+.+++.+..--.||+||-+-... .+.+| ++-+| +.+.+
T Consensus 161 ~lDlggIaKGyavD~~~~~L~~~gv~~~lv~~GGdi~~~G~~~~g~pW----------------~IgI~~P~~~~~~~~~ 224 (340)
T 2o18_A 161 YVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPW----------------RVAIQKPTDKENAVQA 224 (340)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESBCSSSSBC----------------CEEECCCCCC----CE
T ss_pred EEEECCEEHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCCCCE----------------EEEEECCCCCCCCCEE
T ss_conf 674520136999999999998739970488615724765668889950----------------8998388886667569
Q ss_pred --EECCEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCC
Q ss_conf --105508999999740477469998265431024201024532337799943799970666876354304538
Q T0515 236 --ITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFA 307 (365)
Q Consensus 236 --va~ag~lit~V~~~k~~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~l 307 (365)
.-.-+.+.|+ -+.+++...++-.++|+.+|--... .......++|..+.|...|.|+.-.++
T Consensus 225 ~~~l~~~avaTS-----G~y~~~~~~~g~~~~HIidP~TG~p-----~~~~~~svTVia~~~~~ADalaTa~~v 288 (340)
T 2o18_A 225 VVDINGHGISTS-----GSYRNYYELDGKRLSHVIDPQTGRP-----IEHNLVSVTVIAPTALEADAWDTGLMV 288 (340)
T ss_dssp EECCBTEEEEEE-----ECCCC-------CCCCCBCTTTSSB-----CCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEC-----CCCCCEEEECCEEECCCCCCCCCCC-----CCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 997478389823-----5557548769917623117888974-----778947999998988899999999984
No 64
>2prv_A Uncharacterized protein YOBK; NP_389780.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=20.14 E-value=32 Score=12.85 Aligned_cols=52 Identities=2% Similarity=-0.114 Sum_probs=30.1
Q ss_pred CCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHC
Q ss_conf 7789982788455132136788678808999778808999836879998734
Q T0515 313 GDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL 364 (365)
Q Consensus 313 GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~~ 364 (365)
..++.|.+.|...+.+-..-.....+.+++.+.+....-....|+++|+.++
T Consensus 86 ~~~i~~~~~gg~~~~~d~~~~~~~e~~Vv~~d~~~~~~~~~A~SF~efL~~~ 137 (153)
T 2prv_A 86 DGLVVIEDVDYFAYCLDTNKMKDGECPVVEWDRVIGYQDTVADSFIEFFYNK 137 (153)
T ss_dssp TTEEEEEECSSEEEEEETTSCBTTBCCEEEEETTTEEEEEEESSHHHHHHHH
T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHH
T ss_conf 7679998079957999833677886748999758985888313999999999
Done!