Query         T0515 putative carboxynorspermidine decarboxylase, Sinorhizobium meliloti, 365 residues
Match_columns 365
No_of_seqs    121 out of 2790
Neff          8.5 
Searched_HMMs 22458
Date          Fri May 21 18:06:17 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0515.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0515.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2p3e_A Diaminopimelate decarbo 100.0       0       0  571.7  34.3  358    3-363    33-416 (420)
  2 2qgh_A Diaminopimelate decarbo 100.0       0       0  563.3  35.7  361    2-363    31-417 (425)
  3 2oo0_A ODC, ornithine decarbox 100.0       0       0  556.7  30.5  354    3-364    47-439 (471)
  4 1f3t_A ODC, ornithine decarbox 100.0       0       0  557.4  29.7  348    3-358    37-424 (425)
  5 1knw_A Diaminopimelate decarbo 100.0       0       0  545.2  35.4  353    3-363    25-417 (425)
  6 1twi_A Diaminopimelate decarbo 100.0       0       0  546.5  33.9  361    2-363    28-426 (434)
  7 7odc_A Protein (ornithine deca 100.0       0       0  548.3  29.4  347    2-357    36-423 (424)
  8 2o0t_A Diaminopimelate decarbo 100.0       0       0  546.6  30.0  360    2-363    40-446 (467)
  9 3btn_A Antizyme inhibitor 1; T 100.0       0       0  551.1  24.9  351    3-363    37-427 (448)
 10 2plj_A Lysine/ornithine decarb 100.0       0       0  537.7  32.4  342    3-352    54-418 (419)
 11 2j66_A BTRK, decarboxylase; bu 100.0       0       0  534.6  34.4  359    2-363    15-415 (428)
 12 2nva_A Arginine decarboxylase, 100.0       0       0  522.0  33.9  333    3-343    16-372 (372)
 13 2yxx_A Diaminopimelate decarbo 100.0       0       0  510.9  33.7  360    2-364    11-384 (386)
 14 3gwq_A D-serine deaminase; YP_  99.9 5.1E-22 2.3E-26  159.1  30.8  330    2-354    44-424 (426)
 15 3llx_A Predicted amino acid al  99.9 2.4E-19 1.1E-23  142.0  23.6  323    2-353    12-371 (376)
 16 1vfs_A Alanine racemase; TIM-b  99.8 1.2E-15 5.3E-20  118.3  22.5  296    3-322     5-342 (386)
 17 1xfc_A Alanine racemase; alpha  99.7   3E-14 1.3E-18  109.3  24.9  297    8-322    15-345 (384)
 18 2vd8_A Alanine racemase; pyrid  99.7 2.7E-13 1.2E-17  103.1  28.1  318    6-353    12-385 (391)
 19 1bd0_A Alanine racemase; isome  99.7   2E-13 8.9E-18  104.0  26.1  297    5-322     7-335 (388)
 20 3e5p_A Alanine racemase; ALR,   99.7 2.2E-13 9.7E-18  103.8  23.4  285    5-320     8-335 (371)
 21 3kw3_A Alanine racemase; niaid  99.6 1.2E-13 5.3E-18  105.5  20.5  291    6-321    22-345 (376)
 22 1rcq_A Catabolic alanine racem  99.6 5.2E-13 2.3E-17  101.3  22.3  286    6-322     5-326 (357)
 23 3co8_A Alanine racemase; prote  99.6 1.7E-12 7.8E-17   98.0  23.8  280    5-322     9-337 (380)
 24 2rjg_A Alanine racemase; alpha  99.6 1.4E-12 6.2E-17   98.6  22.5  292    4-322    23-348 (379)
 25 3hur_A Alanine racemase; struc  99.6 9.7E-13 4.3E-17   99.6  21.5  288    4-322     8-341 (395)
 26 2dy3_A Alanine racemase; alpha  99.6   1E-11 4.6E-16   93.0  24.7  283    8-334     7-343 (361)
 27 3cpg_A Uncharacterized protein  98.5 7.6E-06 3.4E-10   55.4  13.8  210    2-238    10-270 (282)
 28 1ct5_A Protein (yeast hypothet  93.1    0.39 1.7E-05   25.1  17.8  142   10-165    10-185 (256)
 29 1w8g_A YGGS, hypothetical UPF0  92.5    0.47 2.1E-05   24.6  18.3  176   12-198     9-204 (234)
 30 1vc3_B L-aspartate-alpha-decar  73.8     3.7 0.00017   18.8   6.1   71  279-354    25-95  (96)
 31 1uhe_A Aspartate 1-decarboxyla  70.8     4.2 0.00019   18.5   4.1   65  279-350    24-89  (97)
 32 2j6v_A UV endonuclease, UVDE;   69.3     4.7 0.00021   18.2   4.9   97   96-200    55-169 (301)
 33 2v5j_A 2,4-dihydroxyhept-2-ENE  69.0     4.8 0.00021   18.1  15.5   98   21-119    30-141 (287)
 34 1dxe_A 2-dehydro-3-deoxy-galac  68.8     4.8 0.00022   18.1  13.1  183   20-226     9-212 (256)
 35 2vws_A YFAU, 2-keto-3-deoxy su  65.0     5.7 0.00025   17.6  15.5  187   21-230     9-216 (267)
 36 1pqh_A Aspartate 1-decarboxyla  63.7     6.1 0.00027   17.5   5.1   71  279-354    66-136 (143)
 37 2c45_A Aspartate 1-decarboxyla  63.0     6.2 0.00028   17.4   5.1   71  279-354    49-119 (139)
 38 1v97_A XD, xanthine dehydrogen  58.8     7.4 0.00033   16.9   5.8   69  158-229   759-827 (1332)
 39 2f9h_A PTS system, IIA compone  57.4     7.6 0.00034   16.8   3.4   29  295-323   101-129 (129)
 40 1rm6_A 4-hydroxybenzoyl-COA re  52.8     9.2 0.00041   16.3   5.0   68  158-229   206-273 (769)
 41 1izc_A Macrophomate synthase i  50.6     9.9 0.00044   16.1   9.6  100   21-120    32-148 (339)
 42 1ffv_B CUTL, molybdoprotein of  49.9      10 0.00045   16.0   6.1   67  158-228   229-295 (803)
 43 2w3s_B Xanthine dehydrogenase;  49.1      11 0.00047   15.9   6.2   11  195-205   223-233 (777)
 44 1i60_A IOLI protein; beta barr  46.3      12 0.00052   15.7   8.7   82  150-231    56-143 (278)
 45 1d4b_A CIDE B, human cell deat  38.9      13 0.00057   15.4   2.1   26  334-364    68-93  (122)
 46 1olt_A Oxygen-independent copr  37.6      16  0.0007   14.8   3.2   37  146-182   195-231 (457)
 47 2z1c_A Hydrogenase expression/  37.4      15 0.00065   15.0   2.2   16  305-320    31-46  (75)
 48 1wbh_A KHG/KDPG aldolase; lyas  36.4      16 0.00073   14.7   5.2   60   37-96     26-91  (214)
 49 2uv8_G Fatty acid synthase sub  33.0      19 0.00083   14.4  11.1   12   12-23    628-639 (2051)
 50 3mml_B Allophanate hydrolase s  32.2      19 0.00085   14.3   2.7   34  287-322   194-228 (228)
 51 1wa3_A 2-keto-3-deoxy-6-phosph  30.8      20  0.0009   14.1   3.2   50   58-109    71-122 (205)
 52 1zzo_A RV1677; thioredoxin fol  29.9      21 0.00093   14.0   4.0   37  328-364    93-130 (136)
 53 1vhc_A Putative KHG/KDPG aldol  28.1      22   0.001   13.8   5.6   77   32-108    22-106 (224)
 54 1w32_A Endo-1,4-beta-xylanase   27.8      16  0.0007   14.8   1.1   42  157-198   211-252 (348)
 55 2ot2_A Hydrogenase isoenzymes   27.1      22 0.00096   13.9   1.7   15  306-320    38-52  (90)
 56 3bww_A Protein of unknown func  26.4      11 0.00049   15.8   0.1  138  156-299    59-214 (307)
 57 2fdr_A Conserved hypothetical   25.1      25  0.0011   13.5   4.6   10   19-28     24-33  (229)
 58 2uva_G Fatty acid synthase bet  25.0      26  0.0011   13.5  11.6   10   31-40    894-903 (2060)
 59 1mxs_A KDPG aldolase; 2-keto-3  24.5      26  0.0012   13.4   4.9  100    5-107     6-114 (225)
 60 3jyn_A Quinone oxidoreductase;  21.9      29  0.0013   13.1   7.5   19  213-231   198-216 (325)
 61 3eur_A Uncharacterized protein  21.5      30  0.0013   13.0   5.4   49  314-364    92-140 (142)
 62 3dx5_A Uncharacterized protein  20.9      31  0.0014   13.0   7.4   19   40-58     16-35  (286)
 63 2o18_A Thiamine biosynthesis l  20.8      31  0.0014   12.9   4.2  115  167-307   161-288 (340)
 64 2prv_A Uncharacterized protein  20.1      32  0.0014   12.9   5.3   52  313-364    86-137 (153)

No 1  
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5}
Probab=100.00  E-value=0  Score=571.72  Aligned_cols=358  Identities=17%  Similarity=0.190  Sum_probs=308.0

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf             88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA   80 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~   80 (365)
                      ||||||||++.|++|+++|+++|  ++++++||+|||+++.|++.+++.|+|+||+|++|+++|++.|  +.++++++|+
T Consensus        33 gTP~yv~d~~~i~~n~~~l~~a~--p~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~~p~  110 (420)
T 2p3e_A           33 GTPLYVYSSNFIKERFEAYRKAF--PDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVG  110 (420)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHS--TTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECSSC
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99889989999999999999868--9988999966689989999999819982898589999999859991106874665


Q ss_pred             CCHHHHHHHHHCCC-EECCCCHHHHHHHHHH----HCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHH----
Q ss_conf             88668999997288-0021898999999997----25887113115677745543446678871013148999999----
Q T0515            81 YGDNEIDEVVSHAD-KIIFNSISQLERFADK----AAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER----  151 (365)
Q Consensus        81 k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~----~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~----  151 (365)
                      |++++++.|+++|+ .+++||++|+++|.+.    .+..++++|+||..+...+....+++..+|||++..+....    
T Consensus       111 k~~~~i~~a~~~gv~~~~~ds~~El~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~  190 (420)
T 2p3e_A          111 KTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYA  190 (420)
T ss_dssp             CCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             31367899987401234557788889999888743999679999834877667756557776555564305668888887


Q ss_pred             ---HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCC----CCHHHHHHHHHHHHH
Q ss_conf             ---736904899850678767799999999999999---9844565166504777898889----788999999999861
Q T0515           152 ---VMDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAFSD  221 (365)
Q Consensus       152 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~  221 (365)
                         .+.++.|+|||+|||+.+++.|.++++.+.+++   .+.+.++++||+||||+++|..    .+...+...+.....
T Consensus       191 ~~~~~l~~~GlHfH~gS~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (420)
T 2p3e_A          191 SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLE  270 (420)
T ss_dssp             HTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCSTTCCCCCHHHHHHHHTTTC-
T ss_pred             HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             65479738999980898769838988778999999998887299855453067647567765443104667899998764


Q ss_pred             CCCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCC---CCCCCCCCEEEEEEECCCCC
Q ss_conf             2660899971620010550899999974047-7469998265431024201024532---33779994379997066687
Q T0515           222 RYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETA---KVLPNEGSHSYMICGKSCLA  297 (365)
Q Consensus       222 ~~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~G~~C~~  297 (365)
                      ..+++|++|||||+|++||+|+|+|+++|++ +++|+++|+|+++++.+.+......   ...++....+++|+||||++
T Consensus       271 ~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~  350 (420)
T 2p3e_A          271 NVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETKERKKVVADIVGPICET  350 (420)
T ss_dssp             -CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCCCEEESBCCC---CEEEEECSSSST
T ss_pred             CCCCEEEEEECCEEEECEEEEEEEEEEEEECCCEEEEEEECCCCCCCCHHHHCCCCCEECCCCCCCCCEEEEEEECCCCC
T ss_conf             55877999215357506189999999998479817999956757755645622442100011477882279999717888


Q ss_pred             CCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHH
Q ss_conf             635430453898897778998278845513213678867880899977880899983-687999873
Q T0515           298 GDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQS  363 (365)
Q Consensus       298 ~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~  363 (365)
                      +|+|+++..+|++++||+|+|.|+|||+++|+|+||++|+|++|+++ ||++++||| ||+||+.++
T Consensus       351 ~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~-~g~~~lir~ret~ed~~~~  416 (420)
T 2p3e_A          351 GDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE-NGSVKLIRKRENYDYIVEP  416 (420)
T ss_dssp             TCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEE-TTEEEEEECCCCHHHHHGG
T ss_pred             CCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHH
T ss_conf             88890466378899999999869673246563745489998589998-9979999768999999863


No 2  
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00  E-value=0  Score=563.34  Aligned_cols=361  Identities=17%  Similarity=0.195  Sum_probs=309.9

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf             888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV   79 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~   79 (365)
                      -||||||||++.|++|+++|+++|+..+.+++||+||||++.|++.+.+.|+|+||+|++|+++|++.|  +.++++++|
T Consensus        31 ~gTP~yv~d~~~l~~n~~~l~~a~~~~~~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~g~  110 (425)
T 2qgh_A           31 HKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGV  110 (425)
T ss_dssp             CCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHCEECCC
T ss_conf             49988997699999999999985799997599998428999999999984995998299999999975998001332155


Q ss_pred             CCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHH--
Q ss_conf             7886689999972880-021898999999997258----871131156777455434466788710131489999997--
Q T0515            80 AYGDNEIDEVVSHADK-IIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV--  152 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~----~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~--  152 (365)
                      .|++++++.++..++. +++||++|+++|.+.++.    .++++|+||.+....+....+++..+|||++..+..+..  
T Consensus       111 ~k~~~~i~~a~~~~v~~~~~ds~~el~~l~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfG~~~~~~~~~~~~  190 (425)
T 2qgh_A          111 GKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLW  190 (425)
T ss_dssp             TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             47789999987503246663031157899999886299727999983688756675504676557577116788899875


Q ss_pred             -----HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf             -----36904899850678767799999999999999---98445651665047778988897---88999999999861
Q T0515           153 -----MDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDDY---PVDAFSARLRAFSD  221 (365)
Q Consensus       153 -----~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~~---~~~~~~~~i~~~~~  221 (365)
                           .+++.|+|||+|||+.+++.|.++++.+.+.+   ...+..+++||+||||+.+|...   +.......+.....
T Consensus       191 ~~~~~~l~~~GlhfH~gS~~~~~~~~~~ai~~~~~~~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~  270 (425)
T 2qgh_A          191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQ  270 (425)
T ss_dssp             HHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHHHTT
T ss_pred             HHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             44115347889997478776760778999988899999999838987534546866778876430248999999999861


Q ss_pred             CCCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC----CCCCCCEEEEEEECCCC
Q ss_conf             2660899971620010550899999974047-746999826543102420102453233----77999437999706668
Q T0515           222 RYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV----LPNEGSHSYMICGKSCL  296 (365)
Q Consensus       222 ~~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~G~~C~  296 (365)
                      ..++++++|||||+|++||+|+|+|+++|.. +++|+++|+|+++.+...++....+..    ...++..+++|+||||+
T Consensus       271 ~~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~~~~~ivD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GptC~  350 (425)
T 2qgh_A          271 GLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKGREISPCDVVGPVCE  350 (425)
T ss_dssp             TCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECSCC---CCEEEEEECSSSS
T ss_pred             CCCCEEEEEECCEEEECCCEEEEEEEEEEECCCCEEEEECCCHHCCCCHHHCCCCCCEEECCCCCCCCCEEEEEECCCCC
T ss_conf             45753674001278633608999999997429925999877410246745505654226513567888407999904877


Q ss_pred             CCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHH
Q ss_conf             7635430453898897778998278845513213678867880899977880899983-687999873
Q T0515           297 AGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQS  363 (365)
Q Consensus       297 ~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~  363 (365)
                      ++|+|++++.||+|++||+|+|.|+|||+++|+|+||++|+|++|+++ ||++++||| ||+||++++
T Consensus       351 ~~D~l~~~~~LP~l~~GD~l~f~~~GAYt~~~~s~FN~~p~p~~v~~~-~g~~~~ir~ret~ed~~~~  417 (425)
T 2qgh_A          351 SSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE-DHKIRVIRKREALEDLWRL  417 (425)
T ss_dssp             TTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEEC-C-CEEEEECCCCGGGGTGG
T ss_pred             CCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEEE-CCEEEEEECCCCHHHHHHH
T ss_conf             778886366478999999999949751126453755489998399998-9979999768999999970


No 3  
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00  E-value=0  Score=556.73  Aligned_cols=354  Identities=18%  Similarity=0.223  Sum_probs=298.9

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf             88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA   80 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~   80 (365)
                      +|||||||++.|++++++|+++|  |+++++||+||||++.||+.+++.|+|+||+|.+|+++|+++|  +++++|++|+
T Consensus        47 ~~pfyv~D~~~i~~~~~~~~~~l--p~v~~~YAvKaN~~~~vl~~l~~~G~G~DvaS~gEl~~al~~G~~~~~Iif~gp~  124 (471)
T 2oo0_A           47 KDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPC  124 (471)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             98879968999999999999868--9986887741089899999999849939983999999999769894529997998


Q ss_pred             CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHH
Q ss_conf             886689999972880-02189899999999725887113115677745543446678871013148999------99973
Q T0515            81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERVM  153 (365)
Q Consensus        81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~~  153 (365)
                      |++++|+.|+++|+. +++||++||++|.+..++.++.+|++++...      .+++..+|||++..+.      +...+
T Consensus       125 K~~~ei~~A~~~gv~~i~~dS~~EL~~i~~~~~~~~v~lRi~~~~~~------~~~~~~~KFG~~~~~~~~~~~~~~~~~  198 (471)
T 2oo0_A          125 KQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSK------AVCRLSVKFGATLRTSRLLLERAKELN  198 (471)
T ss_dssp             CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEECCCCTT------SSBCCTTTSCBCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999999998599699967999999999750147633435678655------421146774424899999999887559


Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHC-----CC
Q ss_conf             6904899850678767799999999999999---9844565166504777898889-7889999999998612-----66
Q T0515           154 DRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDR-----YG  224 (365)
Q Consensus       154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~-----~~  224 (365)
                      +++.|||||+|||+.+++.|.++++.+..++   .+.+.++++||+|||||++|+. .+++.++..+....++     .+
T Consensus       199 l~l~GlH~HiGSq~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  278 (471)
T 2oo0_A          199 IDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSG  278 (471)
T ss_dssp             CEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCSSSSSSSCHHHHHHHHHHHHHHHSCGGGT
T ss_pred             CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             60899999828865630789999998888999998609763210246775666667778889999998877652135788


Q ss_pred             EEEEEECCCEEEECCEEEEEEEEEECCC---------------CCEEEEECCCCCCCCCCHHCCCCCCC-C-----CCCC
Q ss_conf             0899971620010550899999974047---------------74699982654310242010245323-3-----7799
Q T0515           225 VQIYLEPGEASITKSTTLEVTVLDTLYN---------------GKNLAIVDSSIEAHMLDLLIYRETAK-V-----LPNE  283 (365)
Q Consensus       225 ~~l~~EpGR~lva~ag~lit~V~~~k~~---------------~~~~~i~d~g~~~~~~~~~~~~~~~~-~-----~~~~  283 (365)
                      +++++|||||+|++||+|+|+|+++|..               ...++++|+|+++.+.+.++...+.. .     .+++
T Consensus       279 ~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~g~~~~~~~~~~~~~~~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~  358 (471)
T 2oo0_A          279 VRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDE  358 (471)
T ss_dssp             CEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCTTC
T ss_pred             CEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             46997447078641079999999999731311344444446674489998876665345676522652355437878778


Q ss_pred             CCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHH
Q ss_conf             94379997066687635430453898897778998278845513213678867880899977880899983687999873
Q T0515           284 GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQS  363 (365)
Q Consensus       284 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~  363 (365)
                      +.++++|+||||+++|+|++++.||++++||+|+|.++|||+++|+|+||++|+|++|++++++.+++|||+++.|+...
T Consensus       359 ~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~l~i~~~GAY~~s~ss~fN~~~~P~~v~v~~g~~~~lirr~e~~d~~~~  438 (471)
T 2oo0_A          359 KYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFPPE  438 (471)
T ss_dssp             CEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHHHHCC------
T ss_pred             CEEEEEEEECCCCCCCEEEECEECCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHH
T ss_conf             77689999227688878944407789998999999388763376557777999980899983884799960778766276


Q ss_pred             C
Q ss_conf             4
Q T0515           364 L  364 (365)
Q Consensus       364 ~  364 (365)
                      |
T Consensus       439 ~  439 (471)
T 2oo0_A          439 V  439 (471)
T ss_dssp             -
T ss_pred             H
T ss_conf             5


No 4  
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00  E-value=0  Score=557.41  Aligned_cols=348  Identities=19%  Similarity=0.253  Sum_probs=297.8

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf             88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA   80 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~   80 (365)
                      ||||||||++.|++|+++|+++|+  +++++||+|||+++.||++++++|+|+||+|++|+++|+++|  ++++++++|+
T Consensus        37 gtP~yv~d~~~i~~~~~~~~~~lp--~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~aG~~~~~Ii~~gp~  114 (425)
T 1f3t_A           37 GDPFFVADLGDIVRKHETWKKCLP--RVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPC  114 (425)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             983799589999999999998689--988888852489899999999839959962999999999869890429994798


Q ss_pred             CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHH
Q ss_conf             886689999972880-02189899999999725887113115677745543446678871013148999------99973
Q T0515            81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERVM  153 (365)
Q Consensus        81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~~  153 (365)
                      |++++|+.|+++|+. +++||++||+++.+..++.++.+|++|.....      +++..+|||++..+.      +...+
T Consensus       115 Ks~~el~~A~~~gv~~i~~Ds~~eL~~i~~~~~~~~v~~Ri~~~~~~~------~~~~~sKFGi~~~~~~~~l~~~~~~~  188 (425)
T 1f3t_A          115 KQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLA------RCRLSVKFGAKVEDCRFILEQAKKLN  188 (425)
T ss_dssp             CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------------CCSCBCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             999999999987999999678899999998678997279961467667------68788888987999999999998669


Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHH---HHHHHCCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCC-----C
Q ss_conf             69048998506787677999999999999---999844565166504777898889-78899999999986126-----6
Q T0515           154 DRINGFMIHNNCENKDFGLFDRMLGEIEE---RFGALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDRY-----G  224 (365)
Q Consensus       154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~~~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~~-----~  224 (365)
                      .++.|+|||+|||+.+.+.|.++++.+..   ...+++.++++||+||||++.|++ .+++.+++.+++.+++.     +
T Consensus       189 l~l~GlH~H~GS~~~~~~~~~~~i~~~~~l~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  268 (425)
T 1f3t_A          189 IDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLK  268 (425)
T ss_dssp             CEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHHSCCCTT
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             83899863267677797999999999999999999819974068645776777889999999999999999986154679


Q ss_pred             EEEEEECCCEEEECCEEEEEEEEEECCC-CCE--------------EEEECCCCCCCCCCHHCCCCCCC------CCCCC
Q ss_conf             0899971620010550899999974047-746--------------99982654310242010245323------37799
Q T0515           225 VQIYLEPGEASITKSTTLEVTVLDTLYN-GKN--------------LAIVDSSIEAHMLDLLIYRETAK------VLPNE  283 (365)
Q Consensus       225 ~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~--------------~~i~d~g~~~~~~~~~~~~~~~~------~~~~~  283 (365)
                      ++|++|||||++++||+|+|+|+++|.+ +.+              ++.+++|++..+.+.+.......      ..+++
T Consensus       269 ~~l~~EPGR~lva~ag~lvt~V~~~K~~~g~~~~i~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (425)
T 1f3t_A          269 LTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNE  348 (425)
T ss_dssp             CEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGGHHHHSCCCCCCEECSCCCTTC
T ss_pred             CEEEEECCCCEEECEEEEEEEEEEEEECCCCEEEEECCCCCCCCCEEEEECCHHCCCHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             68999046415623389999999999538815775124445765328996701036567777313430013566888888


Q ss_pred             CCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHH
Q ss_conf             94379997066687635430453898897778998278845513213678867880899977880899983-6879
Q T0515           284 GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYA  358 (365)
Q Consensus       284 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~  358 (365)
                      ..++++|+||+|+++|+|++++.||++++||+|+|+|+|||+++|+|+||++|+|++|++++++..++||| ||+|
T Consensus       349 ~~~~~~I~G~~C~~~D~l~~~~~LP~l~~GD~l~~~~~GAY~~s~ss~fn~~~~P~~v~v~~g~~~~~iR~ret~e  424 (425)
T 1f3t_A          349 KLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKSQK  424 (425)
T ss_dssp             CEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEECCSCSTTHHHHHCC--
T ss_pred             CEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf             7778999951888874994776988999999998728561037664766699998199999698079997466767


No 5  
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00  E-value=0  Score=545.16  Aligned_cols=353  Identities=18%  Similarity=0.247  Sum_probs=298.6

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCC------CCCEE
Q ss_conf             885678558999999999999972179879872021589899999998088267728899999997079------87277
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFG------KETHA   76 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~~------~~~i~   76 (365)
                      ||||||||++.|++|+++++++     .+++||+|||+++.|++++++.|+||||+|.+|+++|+++|.      +++++
T Consensus        25 GTP~yv~d~~~i~~~~~~l~~~-----~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~~~~~Ii~   99 (425)
T 1knw_A           25 GCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVF   99 (425)
T ss_dssp             CSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEE
T ss_pred             CCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             9998998799999999985266-----98999961078999999999839988998999999999869996677330797


Q ss_pred             ECCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHH------HHHH
Q ss_conf             0477886689999972880021898999999997258871131156777455434466788710131489------9999
Q T0515            77 YSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV------PKVE  150 (365)
Q Consensus        77 ~~~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~------~~~~  150 (365)
                      ++|+|+.++++.+++.|+.+++||++|++++.+.++..++.+|++++++...+....+++..+|||....      ..+.
T Consensus       100 ~~p~k~~~~i~~a~~~g~~i~~ds~~el~~l~~~~~~~~i~lRi~~~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~~  179 (425)
T 1knw_A          100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ  179 (425)
T ss_dssp             EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTTCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             47754699998666415201001478999997535667442113788664421123567776545324034467888887


Q ss_pred             HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC----CCHHHHHHHHHHHHH----C
Q ss_conf             97369048998506787677999999999999999844565166504777898889----788999999999861----2
Q T0515           151 RVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAFSD----R  222 (365)
Q Consensus       151 ~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~----~  222 (365)
                      ..+.++.|+|||+|||+.+.+.+. .+..+.+.+.+.+.++++||+|||||++|.+    .+.+.+...+....+    .
T Consensus       180 ~~~l~~~GlhfHvgS~~~~~~~~~-~~~~~~~~~~~~g~~l~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (425)
T 1knw_A          180 RHHLQLVGIHMHIGSGVDYAHLEQ-VCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARH  258 (425)
T ss_dssp             HTTCEEEEEECCCCCTTCHHHHHH-HHHHHHHHHHHHTCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCEEEEEEEECCCCCCHHHHHH-HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             569179888884277532678999-9998877654048146665215774657787777889899988888888876641


Q ss_pred             --CCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC---------CCCCCCEEEEE
Q ss_conf             --660899971620010550899999974047-746999826543102420102453233---------77999437999
Q T0515           223 --YGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV---------LPNEGSHSYMI  290 (365)
Q Consensus       223 --~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i  290 (365)
                        .+++|++|||||+|++||+++|+|+++|++ ++.|+++|+|+++++...+ +...+..         ....+..+++|
T Consensus       259 ~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~v  337 (425)
T 1knw_A          259 LGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAM-YGSYHHISALAADGRSLEHAPTVETVV  337 (425)
T ss_dssp             HTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHH-HCCCCCEEEECTTCCCCTTCCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHH-CCCCCCEEEECCCCCCCCCCCCEEEEE
T ss_conf             3652499843742201144379999989970697468997751256667566-376441256415765444689538999


Q ss_pred             EECCCCCCCEEECC-------CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHH
Q ss_conf             70666876354304-------53898897778998278845513213678867880899977880899983-68799987
Q T0515           291 CGKSCLAGDVFGEF-------RFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQ  362 (365)
Q Consensus       291 ~G~~C~~~D~~~~~-------~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~  362 (365)
                      +||||+++|+|+++       +.||++++||||+|.|+||||++|+|+||++|+|++|+++ ||++++||| ||+||+++
T Consensus       338 ~GptC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~FN~~p~p~~v~~~-~g~~~~ir~ret~~d~~~  416 (425)
T 1knw_A          338 AGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELLA  416 (425)
T ss_dssp             ECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECCCCHHHHHT
T ss_pred             EECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHH
T ss_conf             9268778707863566653335478899999999959763148653776799988689999-998999978899999972


Q ss_pred             H
Q ss_conf             3
Q T0515           363 S  363 (365)
Q Consensus       363 ~  363 (365)
                      +
T Consensus       417 ~  417 (425)
T 1knw_A          417 L  417 (425)
T ss_dssp             T
T ss_pred             C
T ss_conf             1


No 6  
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00  E-value=0  Score=546.50  Aligned_cols=361  Identities=18%  Similarity=0.185  Sum_probs=303.2

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCC
Q ss_conf             88856785589999999999999721------7987987202158989999999808826772889999999707--987
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREK------SGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKE   73 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~------~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~   73 (365)
                      .|||+||||++.|++|+++++++|+.      .+++++||+|||+++.||+++++.|+|+||+|.+|+++|++.|  +++
T Consensus        28 ~GTP~yV~d~~~i~~n~~~l~~af~~~~~~~g~~~~v~YAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~  107 (434)
T 1twi_A           28 FGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKK  107 (434)
T ss_dssp             HCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGG
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCC
T ss_conf             69988998799999999999998877676238864999986348989999999983998499789999987531257422


Q ss_pred             CEEECCCCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHC----CCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHH-
Q ss_conf             2770477886689999972880-02189899999999725----88711311567774554344667887101314899-
Q T0515            74 THAYSVAYGDNEIDEVVSHADK-IIFNSISQLERFADKAA----GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVP-  147 (365)
Q Consensus        74 ~i~~~~~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~----~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~-  147 (365)
                      +++++|+|++++++.|++.|+. +++||++|++++.+.++    ..++++|+||..+.+.+....+++..+|||....+ 
T Consensus       108 Ii~~gp~K~~~~l~~A~~~gv~~~~~ds~~el~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfG~~~~~~  187 (434)
T 1twi_A          108 IVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESG  187 (434)
T ss_dssp             EEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTS
T ss_pred             CCCCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCHH
T ss_conf             34556643066666787678603322203566666667887099855012214676756663242254222456530013


Q ss_pred             ----HHHH----HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCCC----CHHHH
Q ss_conf             ----9999----736904899850678767799999999999999---98445651665047778988897----88999
Q T0515           148 ----KVER----VMDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDDY----PVDAF  212 (365)
Q Consensus       148 ----~~~~----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~~----~~~~~  212 (365)
                          ....    .+.++.|+|||+|||+.+++.|.++++.+.+++   .+.+.++++||+||||+++|...    +...+
T Consensus       188 ~~~~~~~~~~~~~~l~~~GlhfHvgS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~  267 (434)
T 1twi_A          188 IAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQKDL  267 (434)
T ss_dssp             HHHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECCCCBCCCSSSSSCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             67899999887413655562033301224430689999999999999998399804764036666432356532102443


Q ss_pred             HHHHHHHHH-----CCCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC--CCCCC
Q ss_conf             999999861-----2660899971620010550899999974047-746999826543102420102453233--77999
Q T0515           213 SARLRAFSD-----RYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV--LPNEG  284 (365)
Q Consensus       213 ~~~i~~~~~-----~~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~--~~~~~  284 (365)
                      ...+.....     ..+++|++|||||++++||+++|+|+++|.+ +..|+++|+|+++.+.+.+.....+..  ...+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~  347 (434)
T 1twi_A          268 ADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKNE  347 (434)
T ss_dssp             HHHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCCCEEESBCCSC
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCCEEEECCCCC
T ss_conf             10123322211024677569833872132144230578998522587626997134678775302000110022026899


Q ss_pred             CEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHH
Q ss_conf             4379997066687635430453898897778998278845513213678867880899977880899983-687999873
Q T0515           285 SHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQS  363 (365)
Q Consensus       285 ~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~  363 (365)
                      ..+++|+||||+++|+|++++.+|++++||+|+|.|+|||+++|+|+||++|+|++|+++ ++++++||+ +|+||++++
T Consensus       348 ~~~~~i~G~tC~s~D~l~~~~~lp~l~~GD~l~f~~~GAY~~~~~s~FN~~~~p~~v~v~-~~~~~~ir~~~t~ed~~~~  426 (434)
T 1twi_A          348 KEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS-KKGVFLIRERETYADLIAK  426 (434)
T ss_dssp             EEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCHHHHTTT
T ss_pred             CCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHC
T ss_conf             617999944888976899453068899899999949850438464766799988299998-9908999768999999746


No 7  
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00  E-value=0  Score=548.26  Aligned_cols=347  Identities=18%  Similarity=0.200  Sum_probs=296.9

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf             888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV   79 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~   79 (365)
                      .+|||||||++.|++|+++|+++|  |+++++||+||||++.||+.+++.|+|+||+|++|+++|+++|  ++++++++|
T Consensus        36 ~~~pfyv~d~~~i~~~~~~~~~~l--p~v~~~YAvKaN~~~~il~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp  113 (424)
T 7odc_A           36 DKDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANP  113 (424)
T ss_dssp             CCCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCS
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf             998689947999999999999868--998688885138989999999984997899789999999974959363999899


Q ss_pred             CCCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHH
Q ss_conf             788668999997288-002189899999999725887113115677745543446678871013148999------9997
Q T0515            80 AYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERV  152 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~  152 (365)
                      +|++++|+.|++.|+ .+++||++||+++.+..++.++.+|++++...      .+++..+|||++..+.      +...
T Consensus       114 ~K~~~~i~~A~~~gv~~i~~ds~~EL~~i~~~~~~~~v~~Ri~~~~~~------~~~~~~skFG~~~~~~~~~~~~~~~~  187 (424)
T 7odc_A          114 CKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSK------AVCRLSVKFGATLKTSRLLLERAKEL  187 (424)
T ss_dssp             SCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------------CCCBCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             999999999998599679967999999999765557763354058643------44566678885689999999998756


Q ss_pred             HCCCEEEEEEECCCCCCHHHHHHHHHHHHH---HHHHHCCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHC-----C
Q ss_conf             369048998506787677999999999999---999844565166504777898889-7889999999998612-----6
Q T0515           153 MDRINGFMIHNNCENKDFGLFDRMLGEIEE---RFGALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDR-----Y  223 (365)
Q Consensus       153 ~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~~~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~-----~  223 (365)
                      ..++.|+|||+|||+.+++.|.++++.+..   .+.+.+.++++||+||||+++|+. .+++.+++.+++..++     .
T Consensus       188 ~l~l~Glh~HvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  267 (424)
T 7odc_A          188 NIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDS  267 (424)
T ss_dssp             TCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCGGG
T ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             98588999985887762577898888899999998752477635760787566766778989975554344665302478


Q ss_pred             CEEEEEECCCEEEECCEEEEEEEEEECCCC---------------CEEEEECCCCCCCCCCHHCCCCCCCC-------CC
Q ss_conf             608999716200105508999999740477---------------46999826543102420102453233-------77
Q T0515           224 GVQIYLEPGEASITKSTTLEVTVLDTLYNG---------------KNLAIVDSSIEAHMLDLLIYRETAKV-------LP  281 (365)
Q Consensus       224 ~~~l~~EpGR~lva~ag~lit~V~~~k~~~---------------~~~~i~d~g~~~~~~~~~~~~~~~~~-------~~  281 (365)
                      ++++++|||||+|++||+|+|+|+++|...               ..++++|+|+++.+. +.++...+..       .+
T Consensus       268 ~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~~vd~g~~~~~~-~~l~~~~~~~~~~~~~~~~  346 (424)
T 7odc_A          268 GVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFN-CILYDHAHVKALLQKRPKP  346 (424)
T ss_dssp             TCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTH-HHHHSCCCCCCEESSCCCT
T ss_pred             CCEEEECCCHHHHHHCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHH-HHHHCCCCEEEEECCCCCC
T ss_conf             966996386450232428999999999842422343454345662589998755466777-7774036504654468888


Q ss_pred             CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCH
Q ss_conf             9994379997066687635430453898897778998278845513213678867880899977880899983-687
Q T0515           282 NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTY  357 (365)
Q Consensus       282 ~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~  357 (365)
                      .++.++++|+||||+++|+|++++.||++++||+|+|.++|||+++|+|+||++|+|++|++.+++.+++||| +||
T Consensus       347 ~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~P~~v~v~~~~~~~lir~~et~  423 (424)
T 7odc_A          347 DEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQIQSH  423 (424)
T ss_dssp             TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHC-----
T ss_pred             CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCC
T ss_conf             78777899997286887688645477899999999993988512655365679999858999978966999835679


No 8  
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00  E-value=0  Score=546.63  Aligned_cols=360  Identities=18%  Similarity=0.195  Sum_probs=302.4

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf             888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV   79 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~   79 (365)
                      .|||+||||++.|++|+++++++|+ ++++++||+|||+++.|++.+.++|+|+||+|.+|+++|++.|  ++++++++|
T Consensus        40 ~GTP~yV~d~~~i~~n~~~l~~a~~-~~~~i~YAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~Ii~~gp  118 (467)
T 2o0t_A           40 YGTPLFVIDEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGN  118 (467)
T ss_dssp             HCSSEEEEEHHHHHHHHHHHHHHTS-SGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCT
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf             6999899889999999999998558-998799987548989999999981997999899999999974989662998289


Q ss_pred             CCCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHH-----HH
Q ss_conf             788668999997288-0021898999999997258----8711311567774554344667887101314899-----99
Q T0515            80 AYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVP-----KV  149 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~----~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~-----~~  149 (365)
                      +|++++++.|+..++ .+++||++|++++.+.++.    ..+++|++|++....+....+++..+|||+...+     ..
T Consensus       119 ~k~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~i~lrl~~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~  198 (467)
T 2o0t_A          119 NKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAV  198 (467)
T ss_dssp             TCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             89999999988625517886778999999998776298742222026886555542223576544567540135789999


Q ss_pred             ----HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH--------HHHCCCCCEEEECCCCCCCCCC----CCHHHHH
Q ss_conf             ----99736904899850678767799999999999999--------9844565166504777898889----7889999
Q T0515           150 ----ERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERF--------GALIARVDWVSLGGGIHFTGDD----YPVDAFS  213 (365)
Q Consensus       150 ----~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~idiGGG~~~~~~~----~~~~~~~  213 (365)
                          .....++.|+|||+|||+.+++.|.+++..+.+++        .+.+.+++++|+||||+.+|..    .+++.++
T Consensus       199 ~~~~~~~~~~l~Glh~H~gS~~~d~~~~~~a~~~~~~l~~~~~~~~~~~~~~~l~~ld~GGG~~~~~~~~~~~~~~~~~~  278 (467)
T 2o0t_A          199 RRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELA  278 (467)
T ss_dssp             HHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCCCHHHHH
T ss_pred             HHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             99973669847889985288877708899999999998888998655650766331034078676777777776378899


Q ss_pred             HHHHHHHHC-------CCEEEEEECCCEEEECCEEEEEEEEEECC------CCCEEEEECCCCCCCCCCHHCCCCCCCC-
Q ss_conf             999998612-------66089997162001055089999997404------7746999826543102420102453233-
Q T0515           214 ARLRAFSDR-------YGVQIYLEPGEASITKSTTLEVTVLDTLY------NGKNLAIVDSSIEAHMLDLLIYRETAKV-  279 (365)
Q Consensus       214 ~~i~~~~~~-------~~~~l~~EpGR~lva~ag~lit~V~~~k~------~~~~~~i~d~g~~~~~~~~~~~~~~~~~-  279 (365)
                      +.+....++       .+++|++|||||+|++||+|+|+|+.+|+      .+++|+++|+|+++++...+....++.. 
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~EPGR~lv~~ag~lvt~V~~~k~~~~k~~~~~~~v~~D~g~~~~~~~~~~~~~~~i~~  358 (467)
T 2o0t_A          279 AKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRL  358 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCCTTTCCHHHHHCCCCCEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEE
T ss_conf             99999999875320566751899557266236403899999987411223386589998765545667566077463485


Q ss_pred             ---CCCCCCEEEEEEECCCCCCCEEECCCCCC-CCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-
Q ss_conf             ---77999437999706668763543045389-8897778998278845513213678867880899977880899983-
Q T0515           280 ---LPNEGSHSYMICGKSCLAGDVFGEFRFAE-ELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-  354 (365)
Q Consensus       280 ---~~~~~~~~~~i~G~~C~~~D~~~~~~~lp-~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-  354 (365)
                         .++++.++++|+||||+++|+|++++.+| +|++||+|+|.|+|||+++|+|+||++|+|++|+++ ||++++||| 
T Consensus       359 ~~~~~~~~~~~~~v~GptC~s~D~l~~~~~lP~~l~~GD~l~~~~~GAY~~s~ss~fN~~~~P~~v~i~-~g~~~lirrr  437 (467)
T 2o0t_A          359 VSRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH-AGNARLVLRR  437 (467)
T ss_dssp             CSSCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEEEEE-TTEEEEEECC
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECC
T ss_conf             257788975799999718898779904544788899999999859213257774726699998389999-9969999888


Q ss_pred             CCHHHHHHH
Q ss_conf             687999873
Q T0515           355 FTYADYEQS  363 (365)
Q Consensus       355 ~~~~d~~~~  363 (365)
                      ||+||++.+
T Consensus       438 et~ed~~~~  446 (467)
T 2o0t_A          438 ETVDDLLSL  446 (467)
T ss_dssp             CCHHHHHTT
T ss_pred             CCHHHHHHH
T ss_conf             999999853


No 9  
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00  E-value=0  Score=551.15  Aligned_cols=351  Identities=17%  Similarity=0.185  Sum_probs=292.9

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf             88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA   80 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~   80 (365)
                      +|||||||++.|++|+++|+++|  |+++++||||||+++.||+.+++.|+|+||+|.+|+++|+++|  +++++|++|+
T Consensus        37 ~~pfyv~dl~~i~~~~~~~~~~l--p~v~~~YAvKaN~~~~vl~~l~~~G~G~DvaS~~El~~al~~G~~~~~Iif~gp~  114 (448)
T 3btn_A           37 KNAFFVGDLGKIVKKHSQWQTVV--AQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPC  114 (448)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEESSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99779926999999999999878--9986887731189899999999839949996999999999769795749999999


Q ss_pred             CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHH
Q ss_conf             886689999972880-02189899999999725887113115677745543446678871013148999------99973
Q T0515            81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VERVM  153 (365)
Q Consensus        81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~~~~  153 (365)
                      |++++|+.|++.|+. +++||++||++|.+..++.++.+||+++.....      ....+|||++..+.      +...+
T Consensus       115 Ks~~~i~~A~~~Gv~~~~vDs~~EL~~i~~~~~~~~v~lRI~~~~~~~~------~~~~sKFGi~~~~~~~~l~~~~~~~  188 (448)
T 3btn_A          115 KQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATEDNIGG------EDGNMKFGTTLKNCRHLLECAKELD  188 (448)
T ss_dssp             CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCC--------------CCCCBCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             9999999999879949998999999999976899963898614666777------7677767889999999999997679


Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-----CCE
Q ss_conf             690489985067876779999999999999---998445651665047778988897889999999998612-----660
Q T0515           154 DRINGFMIHNNCENKDFGLFDRMLGEIEER---FGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDR-----YGV  225 (365)
Q Consensus       154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~---~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~-----~~~  225 (365)
                      .++.|+|||+|||+.+++.|.++++.+..+   ..+.+.++++||+||||+.+|.  +.+++++.+++.+++     .++
T Consensus       189 l~l~GlH~HvGS~~~~~~~~~~ai~~~~~~~~~~~~~g~~l~~iDiGGGf~~~~~--~~e~~~~~i~~~l~~~~~~~~~~  266 (448)
T 3btn_A          189 VQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTEI--QLEEVNHVISPLLDIYFPEGSGI  266 (448)
T ss_dssp             CEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCSCHH--HHHHHHHHHHHHHHHHSCTTSCC
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8786743204767577799999999999999999975995305523786787888--76778999999998641226897


Q ss_pred             EEEEECCCEEEECCEEEEEEEEEECCCC-CE---------------EEEECCCCCCCCCCHHCCCCCCC--C----CCCC
Q ss_conf             8999716200105508999999740477-46---------------99982654310242010245323--3----7799
Q T0515           226 QIYLEPGEASITKSTTLEVTVLDTLYNG-KN---------------LAIVDSSIEAHMLDLLIYRETAK--V----LPNE  283 (365)
Q Consensus       226 ~l~~EpGR~lva~ag~lit~V~~~k~~~-~~---------------~~i~d~g~~~~~~~~~~~~~~~~--~----~~~~  283 (365)
                      +|++|||||+|++||+|+|+|+++|+.. .+               ++.++.|++..+...+.......  .    .+++
T Consensus       267 ~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~v~~~g~~~~~~~~~i~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~  346 (448)
T 3btn_A          267 QIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDE  346 (448)
T ss_dssp             EEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEEEEESCCTTTTTGGGGC----CCCEECCC-----
T ss_pred             EEEECCCCEEEECEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             59965986042020899999999997268614666503676661102464212330478887641355655455666788


Q ss_pred             CCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHH
Q ss_conf             94379997066687635430453898897778998278845513213678867880899977880899983-68799987
Q T0515           284 GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQ  362 (365)
Q Consensus       284 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~  362 (365)
                      +.++++|+||||+++|+|++++.||++++||||+|+|+|||+++|+|+||++|+|++|++.+++.+++||+ ++++|..-
T Consensus       347 ~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~L~~~~~GAY~~s~ss~fNg~~~Pa~v~v~~~~~~~~i~~~~~~~d~~~  426 (448)
T 3btn_A          347 PLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQDAGITSDAMM  426 (448)
T ss_dssp             CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCCGGGTTCCCEEEEEEEHHHHHHHHHTTGGGSGGG
T ss_pred             CEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHCCCCCCCCCCEEEEEEECCEEEEEECCCCCHHHHH
T ss_conf             75789999528788778917969989999999988597703132318988999870899990871033101685278897


Q ss_pred             H
Q ss_conf             3
Q T0515           363 S  363 (365)
Q Consensus       363 ~  363 (365)
                      +
T Consensus       427 ~  427 (448)
T 3btn_A          427 K  427 (448)
T ss_dssp             T
T ss_pred             H
T ss_conf             2


No 10 
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=100.00  E-value=0  Score=537.74  Aligned_cols=342  Identities=17%  Similarity=0.169  Sum_probs=293.6

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf             88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA   80 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~   80 (365)
                      ||||||||++.|++|+++|+++|+  +++++||+|||+++.|++.+.++|+|+||+|++|+++|+++|  ++++++++|+
T Consensus        54 GTP~yV~d~~~l~~n~~~~~~~~~--~~~i~YAvKAN~~~~il~~l~~~G~g~dv~S~~El~~al~aG~~~~~Ii~~gp~  131 (419)
T 2plj_A           54 GAPLLLLDCDVIRQQYRALKNALP--NVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTHPI  131 (419)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHST--TEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             998899899999999999998689--988999963288899999999839988998999999999759690218989998


Q ss_pred             CCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHH------HHHHHH
Q ss_conf             88668999997288-00218989999999972588711311567774554344667887101314899------999973
Q T0515            81 YGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVP------KVERVM  153 (365)
Q Consensus        81 k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~------~~~~~~  153 (365)
                      |++++|+.|+++|+ .+++||++|++++.+.+++.++.+|++++.....      +...+|||++..+      .++..+
T Consensus       132 Ks~~el~~al~~gv~~i~vDs~~El~~l~~~a~~~~~~iri~~r~~~~~------~~~~~kfG~~~~~~~~~~~~~~~~~  205 (419)
T 2plj_A          132 KRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNSEAF------ADLSKKFGCSPEQALVIIETAKEWN  205 (419)
T ss_dssp             CCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC---------------CCCSCBCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCC------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             8847699999739846740328899999975522505887752256333------4346887779899999999998679


Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH----HHCCCCCEEEECCCCCCCCCC--CCHHHHHHHHHHHHHCC--CE
Q ss_conf             69048998506787677999999999999999----844565166504777898889--78899999999986126--60
Q T0515           154 DRINGFMIHNNCENKDFGLFDRMLGEIEERFG----ALIARVDWVSLGGGIHFTGDD--YPVDAFSARLRAFSDRY--GV  225 (365)
Q Consensus       154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~----~~~~~~~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~--~~  225 (365)
                      .++.|+|||+|||+.+.+.|.++++.+.+.+.    +.+.++++||+||||+++|.+  .+++.+++.+.+..+..  ++
T Consensus       206 l~~~Gih~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  285 (419)
T 2plj_A          206 IRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETV  285 (419)
T ss_dssp             CEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTSCTTC
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             97678888657565775105779999999998766631777535640697674576566775677778888766303660


Q ss_pred             EEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCCC---CCCCCEEEEEEECCCCCCCEE
Q ss_conf             899971620010550899999974047-7469998265431024201024532337---799943799970666876354
Q T0515           226 QIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKVL---PNEGSHSYMICGKSCLAGDVF  301 (365)
Q Consensus       226 ~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~G~~C~~~D~~  301 (365)
                      +|++|||||+|++||+++++|+++|++ +..|+++|+|+++++.+.++....++..   .++...+++|+||+|+++|+|
T Consensus       286 ~li~EPGR~lva~ag~ll~~V~~~k~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l  365 (419)
T 2plj_A          286 HVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVI  365 (419)
T ss_dssp             EEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCCCCCEEESCCSSCEEEEEEECSSSCTTCEE
T ss_pred             EEECCCCCEEEECCEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHCCCCCCCEECCCCCCCCCEEEEECCCCCCCCEE
T ss_conf             00058761154051689999999985167258997024123567234136646446457888755599881797863588


Q ss_pred             ECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEEC--CCEEEEE
Q ss_conf             30453898897778998278845513213678867880899977--8808999
Q T0515           302 GEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIREL--DGSVRTV  352 (365)
Q Consensus       302 ~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~--dg~~~~i  352 (365)
                      +++..+|++++||+|+|.|||||+++|+||||++|+|++|++++  +++.|+|
T Consensus       366 ~~~~~lp~l~~GD~L~i~~~GAY~~~~as~fN~~~~p~~V~v~~~~~~~~Rli  418 (419)
T 2plj_A          366 AENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFVASSERMI  418 (419)
T ss_dssp             EEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECCCC-------
T ss_pred             CCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf             84538889999999998897733576628688999880899967887653341


No 11 
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00  E-value=0  Score=534.64  Aligned_cols=359  Identities=17%  Similarity=0.186  Sum_probs=298.8

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf             888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV   79 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~   79 (365)
                      .|||+||||++.|++|+++++++++ ++++++||+|||+++.|++.++++|+|+||+|++|+++|++.|  ++++++++|
T Consensus        15 ~gTP~yv~d~~~i~~n~~~l~~~~~-~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~al~~G~~~~~i~~~gp   93 (428)
T 2j66_A           15 FETPFYLYDGDFIEAHYRQLRSRTN-PAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAGFSAENIIFSGP   93 (428)
T ss_dssp             SCSSEEEEEHHHHHHHHHHHHHTSC-TTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCS
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf             1999899889999999999985268-997899987427999999999981991997599999999985999322898788


Q ss_pred             CCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHH---
Q ss_conf             7886689999972880-021898999999997258----87113115677745543446678871013148999999---
Q T0515            80 AYGDNEIDEVVSHADK-IIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER---  151 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~----~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~---  151 (365)
                      .|++++++.+++.|+. +++||.+|++++....+.    ..+.+|+++..+.. +....+++..+|||.+..+..+.   
T Consensus        94 ~k~~~~l~~a~~~gv~~~~~ds~~~~~~i~~~~~~~~~~~~v~~r~~~~~~~~-~~~~~~g~~~~kfg~~~~~~~~~~~~  172 (428)
T 2j66_A           94 GKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFG-STAIKMGGVPRQFGMDESMLDAVMDA  172 (428)
T ss_dssp             CCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC---CCCSSSCCCCSSSEEGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-EEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             66499987776258043126899999999998875398627997327875520-12221266654356420234889987


Q ss_pred             ----HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH----HHHCCCCCEEEECCCCCCCCCC----CCHHHHHHHHHHH
Q ss_conf             ----736904899850678767799999999999999----9844565166504777898889----7889999999998
Q T0515           152 ----VMDRINGFMIHNNCENKDFGLFDRMLGEIEERF----GALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAF  219 (365)
Q Consensus       152 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~----~~~~~~~~~idiGGG~~~~~~~----~~~~~~~~~i~~~  219 (365)
                          ...++.|+|||+|||+.+.+.|.++++.+.+.+    .+.+.++++||+||||+++|.+    .+++.+++.+...
T Consensus       173 ~~~~~~~~~~GlH~h~GS~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ldiGGG~~~~~~~~~~~~~~~~~~~~i~~~  252 (428)
T 2j66_A          173 VRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDY  252 (428)
T ss_dssp             HHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--CCCCCHHHHHHHHHHH
T ss_pred             HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             65315662688687378775411569999999999999999964996412123677676643356632078899999999


Q ss_pred             HHC------CCEEEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCC--------CC---CCCC
Q ss_conf             612------660899971620010550899999974047-74699982654310242010245--------32---3377
Q T0515           220 SDR------YGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRE--------TA---KVLP  281 (365)
Q Consensus       220 ~~~------~~~~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~--------~~---~~~~  281 (365)
                      .++      .+++||+|||||+|++||+|+|+|+++|++ +.+|+++|+|++++..+.+....        ..   ...+
T Consensus       253 ~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (428)
T 2j66_A          253 VQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSG  332 (428)
T ss_dssp             HHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-----------CEEEEC------
T ss_pred             HHHHHHHCCCCCEEEEECCEEEEHHCCCEEEEEEEEECCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCC
T ss_conf             99877513887469972443360111536789999714798469998450003565243363212233047774037777


Q ss_pred             CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHC-CCCCCCCCEEEEEECCCEEEEEEE-CCHHH
Q ss_conf             9994379997066687635430453898897778998278845513213-678867880899977880899983-68799
Q T0515           282 NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN-WFNGVKMPAIAIRELDGSVRTVRE-FTYAD  359 (365)
Q Consensus       282 ~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s-~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d  359 (365)
                      .+..++++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|++ +||++|+|++|+++ ||++++||| ||+||
T Consensus       333 ~~~~~~~~l~G~tC~~~D~l~~~~~lp~l~~GD~l~f~~~GAY~~s~s~~~fn~~p~p~~vl~~-~g~~~lir~ret~ed  411 (428)
T 2j66_A          333 RRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR-NGSYELIRRKGTADD  411 (428)
T ss_dssp             ---CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE-TTEEEEEECCCCHHH
T ss_pred             CCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCHHHHHCHHHCCCCCCCEEEEE-CCEEEEEECCCCHHH
T ss_conf             7884179998659997526632554788999999999188631565602122399998099998-998999978898999


Q ss_pred             HHHH
Q ss_conf             9873
Q T0515           360 YEQS  363 (365)
Q Consensus       360 ~~~~  363 (365)
                      ++.+
T Consensus       412 ~~~~  415 (428)
T 2j66_A          412 IVAT  415 (428)
T ss_dssp             HHGG
T ss_pred             HHHC
T ss_conf             9855


No 12 
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00  E-value=0  Score=521.99  Aligned_cols=333  Identities=15%  Similarity=0.161  Sum_probs=281.4

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECCC
Q ss_conf             88567855899999999999997217987987202158989999999808826772889999999707--9872770477
Q T0515             3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSVA   80 (365)
Q Consensus         3 gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~~   80 (365)
                      +|||||||++.|++|+++|+++|+  +++++||+||||++.||+.++++|+|+||+|++|+++|++.|  ++++++++|+
T Consensus        16 ~~~fyv~d~~~i~~~~~~~~~~~p--~v~~~YAvKAN~~~~il~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp~   93 (372)
T 2nva_A           16 TKSFYVSSPKIVEDLIDQWTILFP--RVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTM   93 (372)
T ss_dssp             CSEEEEECHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTCCGGGEEECCSC
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             986899709999999999998789--986888852089899999999849829994999999999859994789982897


Q ss_pred             CCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCH------HHHHHHHH
Q ss_conf             886689999972880-02189899999999725887113115677745543446678871013148------99999973
Q T0515            81 YGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWD------VPKVERVM  153 (365)
Q Consensus        81 k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~------~~~~~~~~  153 (365)
                      |++++|+.|+++|+. +++||++|++++.+..++..+.+|++++.....      ++..+|||+..      .+.++...
T Consensus        94 Ks~~el~~a~~~gv~i~~~ds~~el~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~kfg~~~~~~~~~~~~~~~~~  167 (372)
T 2nva_A           94 KTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNAT------VQLGNKFGANEDEIRHLLEYAKQLD  167 (372)
T ss_dssp             CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCCTTCS------BCCTTTSSBCGGGHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             9999999999849985897699999988653322222110024676444------6788877766466689999998669


Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCCCCCCCC-----HHHHHHHHHHHHHCCCE
Q ss_conf             6904899850678767799999999999999---984456516650477789888978-----89999999998612660
Q T0515           154 DRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDDYP-----VDAFSARLRAFSDRYGV  225 (365)
Q Consensus       154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~~~~idiGGG~~~~~~~~~-----~~~~~~~i~~~~~~~~~  225 (365)
                      .++.|+|||+|||+.+++.|.++++.+.+.+   .+.+.++++|||||||+++|.+.+     .+.....+.++....++
T Consensus       168 l~~~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (372)
T 2nva_A          168 IEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPEDTV  247 (372)
T ss_dssp             CCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHHHHHHHHHHHHCCCTTC
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             90899995258655885899999999999999887517874287755864658887767735999998765411365454


Q ss_pred             EEEEECCCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC-----C-CCCCCEEEEEEECCCCCC
Q ss_conf             899971620010550899999974047-746999826543102420102453233-----7-799943799970666876
Q T0515           226 QIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV-----L-PNEGSHSYMICGKSCLAG  298 (365)
Q Consensus       226 ~l~~EpGR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~i~G~~C~~~  298 (365)
                      +|++|||||+|++||+|+|+|+++|.+ +..++++|+|+++.+.+.+.....+..     . .+++..+++|+||+|+++
T Consensus       248 ~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~  327 (372)
T 2nva_A          248 TIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTCDGV  327 (372)
T ss_dssp             EEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTT
T ss_pred             EEECCCCCEECCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCC
T ss_conf             32057401031260599999999997188226873331146554301110366402204678878777899993697815


Q ss_pred             CEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             354304538988977789982788455132136788678808999
Q T0515           299 DVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIR  343 (365)
Q Consensus       299 D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~  343 (365)
                      |+|++++.||++++||+|+|.|+|||+++|+|||||+|+|+++++
T Consensus       328 D~l~~~~~LP~l~~GD~l~i~~~GAY~~s~ss~fNg~~~p~v~~~  372 (372)
T 2nva_A          328 DVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI  372 (372)
T ss_dssp             CEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred             CEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf             388876417999999999884955223866188889899837969


No 13 
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00  E-value=0  Score=510.92  Aligned_cols=360  Identities=15%  Similarity=0.149  Sum_probs=308.0

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--CCCCEEECC
Q ss_conf             888567855899999999999997217987987202158989999999808826772889999999707--987277047
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF--GKETHAYSV   79 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~--~~~~i~~~~   79 (365)
                      -|||+||||++.|++|++.++++++.++++++||||||+++.|++.+.++|+||||+|.+|+++++++|  ++.+++++|
T Consensus        11 ~gTP~~viD~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~aG~~~~~iv~~gp   90 (386)
T 2yxx_A           11 HGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGN   90 (386)
T ss_dssp             HCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCS
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf             79988998599999999999974664897799997618859999999984995999489999999976979776996089


Q ss_pred             CCCHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH----HHH
Q ss_conf             7886689999972880-0218989999999972588-711311567774554344667887101314899999----973
Q T0515            80 AYGDNEIDEVVSHADK-IIFNSISQLERFADKAAGI-ARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE----RVM  153 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~~-i~iDs~~el~~i~~~~~~~-~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~----~~~  153 (365)
                      +|++++++.++++++. +++||++|++++.+.++.. .+..|+++..+...+....+++..+|||.+..+..+    ..+
T Consensus        91 ~k~~~~l~~a~~~~~~~~~~ds~~el~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~srfG~~~~~~~~~~~~~~~  170 (386)
T 2yxx_A           91 GKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS  170 (386)
T ss_dssp             CCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHCHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             89999999999839985897699999999995521375268971454444577646677656568869999999996042


Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             69048998506787677999999999999999844565166504777898889--7889999999998612660899971
Q T0515           154 DRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDD--YPVDAFSARLRAFSDRYGVQIYLEP  231 (365)
Q Consensus       154 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~Ep  231 (365)
                      .++.|+|+|+||+..+.+.|.+++.++.+....  ..++.+|+|||++.+|.+  .+++.+...+.... ...+++++||
T Consensus       171 ~~~~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iggG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ep  247 (386)
T 2yxx_A          171 MNIRGLHVHIGSQITRVEPFVEAFSKVVRASER--YGFEEINIGGGWGINYSGEELDLSSYREKVVPDL-KRFKRVIVEI  247 (386)
T ss_dssp             SCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHH--HTCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGG-TTCSEEEEEE
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEECCCC
T ss_conf             577677885355679999999999999998633--4885898678778788866679899999998764-1487030377


Q ss_pred             CCEEEECCEEEEEEEEEECCC-CCEEEEECCCCCCCCCCHHCCCCCCCC--CCCCCCEEEEEEECCCCCCCEEECCCCCC
Q ss_conf             620010550899999974047-746999826543102420102453233--77999437999706668763543045389
Q T0515           232 GEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKV--LPNEGSHSYMICGKSCLAGDVFGEFRFAE  308 (365)
Q Consensus       232 GR~lva~ag~lit~V~~~k~~-~~~~~i~d~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~G~~C~~~D~~~~~~~lp  308 (365)
                      ||+++++||+++|+|+++|+. ++.++++|+|++........+...+..  ..+++.+++.|+||+|+++|+++.++.+|
T Consensus       248 Gr~l~~~a~~l~t~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp  327 (386)
T 2yxx_A          248 GRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELP  327 (386)
T ss_dssp             CHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCCCCSEEEEEECSSSSTTCEEEEEEEES
T ss_pred             CCHHHHHHEEEEEEEEEEEEECCEEEEEECCCCCCCCCHHHHCCCCCCEECCCCCCEEEEEEEEECCCCCCEEEECCCCC
T ss_conf             64622610489999999986288179998886545566666345677354178898357999912889988896553579


Q ss_pred             CCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHHC
Q ss_conf             8897778998278845513213678867880899977880899983-6879998734
Q T0515           309 ELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQSL  364 (365)
Q Consensus       309 ~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~~  364 (365)
                      ++++||+|+|+|+|||+++|+|+||++|+|++|++++||++++||| ||+||++...
T Consensus       328 ~l~~GD~l~~~~~GAY~~~~~~~Fn~~~~p~~v~~~~~g~~~~ir~~e~~~d~~~~~  384 (386)
T 2yxx_A          328 EVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDV  384 (386)
T ss_dssp             CCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECCCCHHHHTTTC
T ss_pred             CCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHC
T ss_conf             999899999969762236553777689988599996699099998379999997523


No 14 
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.93  E-value=5.1e-22  Score=159.12  Aligned_cols=330  Identities=14%  Similarity=0.100  Sum_probs=203.6

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCC
Q ss_conf             8885678558999999999999972179879872021589899999998088-267728899999997079872770477
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSVA   80 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~~   80 (365)
                      |.||+.|+|++++++|++++++..+..++++...+||++.+.|++.+.++|. |+.|++..|++..++.|.+++++..+.
T Consensus        44 l~tP~lvid~~~l~~N~~~m~~~~~~~g~~~rph~Kthks~~ia~~~l~~Ga~~~~vat~~Ea~~l~~~Gi~~illa~~~  123 (426)
T 3gwq_A           44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMANQL  123 (426)
T ss_dssp             BCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEECSCC
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEECCC
T ss_conf             89974998499999999999998865697499983112789999999977998699865999999997499987883267


Q ss_pred             CCHHHHHHHHHC------CCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHH--
Q ss_conf             886689999972------880021898999999997258871131156777455434466788710131489999997--
Q T0515            81 YGDNEIDEVVSH------ADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV--  152 (365)
Q Consensus        81 k~~~~i~~a~~~------g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~--  152 (365)
                      ..++.++.+.+.      .+.+.+||+++++.+.+.+......++|.+.++.+.++..   .........+++.+...  
T Consensus       124 ~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vD~G~~R~G---v~~~e~~~~l~~~i~~~~~  200 (426)
T 3gwq_A          124 VGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVPGGRTG---VRDAAQRNAVLEAITRYPD  200 (426)
T ss_dssp             CSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCTTSSSS---BCSHHHHHHHHHHHHTSTT
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHCC
T ss_conf             8989999999973177934999981899999999988757828999875146864567---6676899999999974337


Q ss_pred             HCCCEEEEEEECCCCCCHHHHHHHH----HHHHHHHHHHC--CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             3690489985067876779999999----99999999844--56516650477789888978899999999986126608
Q T0515           153 MDRINGFMIHNNCENKDFGLFDRML----GEIEERFGALI--ARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ  226 (365)
Q Consensus       153 ~~~i~Gih~H~gs~~~~~~~~~~~l----~~~~~~~~~~~--~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~  226 (365)
                      +..+.|++.|.|+.. +.....+..    ..+..+..+..  .....+.-||..+       ....+..+..........
T Consensus       201 ~l~l~Gi~~h~g~~~-~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~-------~~~~~~~~~~~~~~~~~~  272 (426)
T 3gwq_A          201 TLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW-------YDVVAEEFVKASETGKVE  272 (426)
T ss_dssp             TEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT-------HHHHHHHTHHHHHSSSEE
T ss_pred             CEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC-------CCCCCCCCCCCCCCCCEE
T ss_conf             759999987424447-835499999999999999999751177761354357765-------112121002356776413


Q ss_pred             EEEECCCEEEE---------------------------CCEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCCC
Q ss_conf             99971620010---------------------------550899999974047746999826543102420102453233
Q T0515           227 IYLEPGEASIT---------------------------KSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKV  279 (365)
Q Consensus       227 l~~EpGR~lva---------------------------~ag~lit~V~~~k~~~~~~~i~d~g~~~~~~~~~~~~~~~~~  279 (365)
                      ..+-||.|+..                           .+..++++|+.+.  ...++++|+|......+..........
T Consensus       273 ~~lrpG~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~--~~~~~~vd~G~k~~~~d~g~~~~~~~~  350 (426)
T 3gwq_A          273 VVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIP--EPDRAIIGLGKRDSAFDAGMPEPARHY  350 (426)
T ss_dssp             EEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEE--ETTEEEESCCTTTSCGGGCCCEEEEEE
T ss_pred             EEECCCEEEECCCCHHHHCCCCHHHCCCHHCCCCCCCCEEEEEEEEEEEEC--CCCEEEECCCCEEEEECCCCCCCCEEC
T ss_conf             686263488615631121133200013010134323311379988998775--688799826656777226777550201


Q ss_pred             CCC-------CCCEEEEEEECCCCCCC-EEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEE-E
Q ss_conf             779-------99437999706668763-54304538988977789982788455132136788678808999778808-9
Q T0515           280 LPN-------EGSHSYMICGKSCLAGD-VFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSV-R  350 (365)
Q Consensus       280 ~~~-------~~~~~~~i~G~~C~~~D-~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~-~  350 (365)
                      ...       .....+.|.|  |. .+ .+......+++++||.|.|..-  +..   ..+|.+  +..+++++|+.+ +
T Consensus       351 ~~g~~~~~~~~~~~~~~i~g--~s-dEH~iv~~~~~~~l~vGD~V~l~P~--H~c---~t~~~~--~~~~vv~~~~~v~~  420 (426)
T 3gwq_A          351 RPGNEAPRDIAASEGWEIFG--LM-DQHAYLRIPAGADLKVGDMIAFDIS--HPC---LTFDKW--RQVLVVDPAYRVTE  420 (426)
T ss_dssp             CTTSSSCEECCGGGCCEEEE--EC-SSCEEEECCTTCSCCTTCEEEEECS--SGG---GGGGGC--SEEEEECTTSBEEE
T ss_pred             CCCCCCCCCCCCCCCEEEEE--EC-CCEEEEECCCCCCCCCCCEEEEECC--CCC---CCHHHC--CEEEEEECCCEEEE
T ss_conf             25666763013799806968--82-6605998999998999999999828--788---063418--88999979996999


Q ss_pred             EEEE
Q ss_conf             9983
Q T0515           351 TVRE  354 (365)
Q Consensus       351 ~ir~  354 (365)
                      +++.
T Consensus       421 ~~~t  424 (426)
T 3gwq_A          421 VIET  424 (426)
T ss_dssp             EEEC
T ss_pred             EEEE
T ss_conf             9970


No 15 
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.87  E-value=2.4e-19  Score=141.98  Aligned_cols=323  Identities=16%  Similarity=0.088  Sum_probs=196.6

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECC-
Q ss_conf             8885678558999999999999972179879872021589899999998088-26772889999999707987277047-
Q T0515             2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSV-   79 (365)
Q Consensus         2 ~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~-   79 (365)
                      +.||++++|+++|++|++.+++.++..++++...+||++.+.|++.+.+.|+ +|.|++..|++..++.|.+++++..+ 
T Consensus        12 ~dTP~lviDl~~l~~N~~~~~~~~~~~~~~~~~~vKah~~~~i~~~~~~~G~~~~~vat~~Ea~~l~~~g~~~~l~~~~~   91 (376)
T 3llx_A           12 PDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLYAVGI   91 (376)
T ss_dssp             SCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf             79966998799999999999986414498499996105789999999978999899647999999997799966992366


Q ss_pred             C-CCHHHHHHHHHCCC--EECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCC
Q ss_conf             7-88668999997288--00218989999999972588711311567774554344667887101314899999973690
Q T0515            80 A-YGDNEIDEVVSHAD--KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRI  156 (365)
Q Consensus        80 ~-k~~~~i~~a~~~g~--~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~i  156 (365)
                      . .+.+.+..+...+.  .+.+||+++++.+.+.++.....++|.+.++.+.+......    .. .............+
T Consensus        92 ~~~~~~~~~~~~~~~~~i~~~vds~~~~~~l~~~a~~~~~~~~v~l~vd~G~~R~G~~~----~~-~~~~~~~~~~~~~~  166 (376)
T 3llx_A           92 APAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDHRGGIKP----SD-SKLLTIAKTLGEHF  166 (376)
T ss_dssp             CGGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSSSSSCBCT----TC-THHHHHHHHHGGGE
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH----HH-HHHHHHHHHHCCCC
T ss_conf             80778999987511775999968799999999999875980477640135567688792----58-99999754301333


Q ss_pred             EEEEEEECC-C-CCCHH----HHH---HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC---------------CCHHHH
Q ss_conf             489985067-8-76779----999---99999999999844565166504777898889---------------788999
Q T0515           157 NGFMIHNNC-E-NKDFG----LFD---RMLGEIEERFGALIARVDWVSLGGGIHFTGDD---------------YPVDAF  212 (365)
Q Consensus       157 ~Gih~H~gs-~-~~~~~----~~~---~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~---------------~~~~~~  212 (365)
                      .|++.|.|. . ..+.+    ...   +.+..+.+.+.+.+..+..++.||+....+..               .+....
T Consensus       167 ~gl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ggt~~~~~~~~~~~~~~~~~G~~~~~d~~~~  246 (376)
T 3llx_A          167 TGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYTTFDLVMK  246 (376)
T ss_dssp             EEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCSEECCCGGGTCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCCEEEEEEEEEECCHHHH
T ss_conf             21113131102459889999999999999998642455249986689993860454540389857999787633088775


Q ss_pred             HHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCC-----CCCCC-CCCCE
Q ss_conf             9999998612660899971620010550899999974047746999826543102420102453-----23377-99943
Q T0515           213 SARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRET-----AKVLP-NEGSH  286 (365)
Q Consensus       213 ~~~i~~~~~~~~~~l~~EpGR~lva~ag~lit~V~~~k~~~~~~~i~d~g~~~~~~~~~~~~~~-----~~~~~-~~~~~  286 (365)
                           ....           ......+..++++|+..+. ....+++|+|......+.......     ....+ .....
T Consensus       247 -----~~~~-----------~~~~~~a~~v~~~vi~~~~-~~~~~~~~~G~~~~~~d~g~~~~~~~~g~g~~~~~~g~~~  309 (376)
T 3llx_A          247 -----NIGV-----------CDFSHIAMSVVTTVIGHNK-EKNWLLTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGSVL  309 (376)
T ss_dssp             -----HHTS-----------CCGGGCCEEEEEEEEEEET-TTTEEEESCCHHHHCSCCGGGGSSSCCBTCEEECTTSCEE
T ss_pred             -----HCCC-----------CCCCCCCEEEEEEEEEECC-CCCEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf             -----0567-----------8624211599999986147-7776786266413202467766651210572236788879


Q ss_pred             EEEEEECCCCCCCEEEC--CCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf             79997066687635430--45389889777899827884551321367886788089997788089998
Q T0515           287 SYMICGKSCLAGDVFGE--FRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVR  353 (365)
Q Consensus       287 ~~~i~G~~C~~~D~~~~--~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir  353 (365)
                      +-...+.+++..=++..  ....+++++||.|.+.--  +...-   .|.+  +..+++++|..+..+-
T Consensus       310 ~~~~v~~~s~EH~ii~~~d~~~~~~l~vGD~v~l~p~--H~c~t---~~~~--~~~~vv~~~~v~~~W~  371 (376)
T 3llx_A          310 DGLCVNSTSQEHGVIELSDAYQLEDFPVGHQLRIMPN--HACAT---AAMH--PVYHVLMSDGSHNTWQ  371 (376)
T ss_dssp             EEEEBCEECSSCEEEECCTTCCGGGSCTTCEEEEECS--CHHHH---HTTC--SEEEEECTTSCEEEEE
T ss_pred             CCCEEEEECCCCCEEECCCCCCCCCCCCCCEEEEECC--CCCHH---HHHC--CEEEEEECCEEEEEEC
T ss_conf             9838941047641688888876678999989999768--65354---7618--8799999998999950


No 16 
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.75  E-value=1.2e-15  Score=118.27  Aligned_cols=296  Identities=13%  Similarity=0.049  Sum_probs=183.4

Q ss_pred             CCCEEE-ECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEE
Q ss_conf             885678-55899999999999997217987987202158----9899999998088-26772889999999707987277
Q T0515             3 ETPYYL-IDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHA   76 (365)
Q Consensus         3 gTP~~v-~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~   76 (365)
                      .++.|+ +|+++|++|++.+|+..  ++.+++--||||.    ...+.+++.++|+ +|-|++..|....++.+....++
T Consensus         5 ~~r~~~eIdl~al~~N~~~ir~~~--~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~g~~~~il   82 (386)
T 1vfs_A            5 PTRVYAEIDLDAVRANVRALRARA--PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM   82 (386)
T ss_dssp             CSSEEEEEEHHHHHHHHHHHHTTS--TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
T ss_conf             972899984999999999999768--998499999452464789999999998698999983699999999708999858


Q ss_pred             ECCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HH
Q ss_conf             047788668999997288002189899999999725887113115677745543446678871013148999------99
Q T0515            77 YSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPK------VE  150 (365)
Q Consensus        77 ~~~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~------~~  150 (365)
                      ......+++++.+++++..+++.|.++++.+.+.+......+++.+.++.+.+          ++|+...+.      ..
T Consensus        83 vl~~~~~~~~~~~~~~~~~~~i~s~~~l~~~~~~~~~~~~~~~vhLkiDTGM~----------RlG~~~~e~~~l~~~~~  152 (386)
T 1vfs_A           83 CWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKADTGLG----------RNGCQPADWAELVGAAV  152 (386)
T ss_dssp             ECCCCTTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCSSCC----------SSSBCHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCC----------CCCCCCHHHHHHHHHHH
T ss_conf             98158505688865412230206599999999765513676328999527777----------56737137899988766


Q ss_pred             HH----HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHH---HHHHCCCCCEEEECCCCCC---CCCCCCHHHHHHHHHHH
Q ss_conf             97----369048998506787-6779999999999999---9984456516650477789---88897889999999998
Q T0515           151 RV----MDRINGFMIHNNCEN-KDFGLFDRMLGEIEER---FGALIARVDWVSLGGGIHF---TGDDYPVDAFSARLRAF  219 (365)
Q Consensus       151 ~~----~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~---~~~~~~~~~~idiGGG~~~---~~~~~~~~~~~~~i~~~  219 (365)
                      ..    ...+.|+..|..+-. .+.......++.+.+.   +.+.+.+...+.++..-+.   +-..+++      +|.=
T Consensus       153 ~~~~~~~l~~~gi~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNSa~~l~~p~~~~d~------vR~G  226 (386)
T 1vfs_A          153 AAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL------VRTG  226 (386)
T ss_dssp             HHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSE------EEEC
T ss_pred             HHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCC------CCCC
T ss_conf             5421687646899860233443202778999999999999998727886056631331003582104860------2557


Q ss_pred             HHCCCEEEEE---ECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCC
Q ss_conf             6126608999---7162001055089999997404----------------77469998265431024201024532337
Q T0515           220 SDRYGVQIYL---EPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVL  280 (365)
Q Consensus       220 ~~~~~~~l~~---EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~  280 (365)
                      ..-+|..-..   .+...=..++..+.++|+.+|+                .+..++++..|+...+.+.+...... ..
T Consensus       227 i~lYG~~p~~~~~~~~~~~lkpv~~l~a~ii~v~~v~~G~~VgYg~~~~~~~~~~ia~v~iGYaDG~~R~l~~~~~v-~i  305 (386)
T 1vfs_A          227 LAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGRGPV-LV  305 (386)
T ss_dssp             GGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTTTCEE-EE
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEE-EE
T ss_conf             33067788623267334573466898888887677579975402323024677614686120004644235577089-99


Q ss_pred             CCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf             799943799970666876354304538988977789982788
Q T0515           281 PNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA  322 (365)
Q Consensus       281 ~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G  322 (365)
                         ..+.+.|.|.+|  +|.+.-++.-+++++||.+.+..-.
T Consensus       306 ---~G~~~pvvGrvs--MD~~~vDvt~~~~~~GD~V~l~G~~  342 (386)
T 1vfs_A          306 ---AGKIRRAAGRIA--MDQFVVDLGEDLAEAGDEAVILGDA  342 (386)
T ss_dssp             ---TTEEEEBCSCCC--SSCEEEEEETCCCCTTCEEEEECCG
T ss_pred             ---CCEEEEEEEEEC--CCEEEEECCCCCCCCCCEEEEEECC
T ss_conf             ---999938972985--5717998889878989999998689


No 17 
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.71  E-value=3e-14  Score=109.31  Aligned_cols=297  Identities=13%  Similarity=0.067  Sum_probs=177.9

Q ss_pred             EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             85589999999999999721798798720215----89899999998088-26772889999999707987277047788
Q T0515             8 LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSVAYG   82 (365)
Q Consensus         8 v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~~k~   82 (365)
                      ++|+++|++|++.+|+..+  +.+++--||||    -...|.+.+.++|+ +|-|++..|....++.|....++......
T Consensus        15 ~Idl~al~~N~~~lr~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Il~l~~~~   92 (384)
T 1xfc_A           15 MVDLGAIEHNVRVLREHAG--HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPP   92 (384)
T ss_dssp             EEEHHHHHHHHHHHHHHHT--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEECCCCT
T ss_pred             EECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             9829999999999997689--98399999250363788999999997796999992799999999709988669984662


Q ss_pred             HHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH----HHHCCCEE
Q ss_conf             66899999728800218989999999972588711311567774554344667887101314899999----97369048
Q T0515            83 DNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE----RVMDRING  158 (365)
Q Consensus        83 ~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~----~~~~~i~G  158 (365)
                      ++++..+++++...+++|.++++.+.+.++.....+++.+.++.+.++.....   ..+. ...+...    ....++.|
T Consensus        93 ~~~~~~~~~~~~~~~i~s~~~~~~l~~~~~~~~~~~~vhLkiDTGM~RlG~~~---~e~~-~~~~~~~~~~~~~~l~l~G  168 (384)
T 1xfc_A           93 GIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGP---AQFP-AMLTALRQAMAEDAVRLRG  168 (384)
T ss_dssp             TCCCHHHHHTTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSSCCSSSBCT---TTHH-HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH---HHHH-HHHHHHHHHHHHCCCCCEE
T ss_conf             77899987513201334589999989888753134214789746777678680---6778-8888888776421555101


Q ss_pred             EEEEECCCCC-CHHHHHHHHHHHHHH---HHHHCCCCCEEEECC--CC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             9985067876-779999999999999---998445651665047--77-8988897889999999998612660899971
Q T0515           159 FMIHNNCENK-DFGLFDRMLGEIEER---FGALIARVDWVSLGG--GI-HFTGDDYPVDAFSARLRAFSDRYGVQIYLEP  231 (365)
Q Consensus       159 ih~H~gs~~~-~~~~~~~~l~~~~~~---~~~~~~~~~~idiGG--G~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~Ep  231 (365)
                      +..|..+-.. +.....+.+.++.+.   +.+.+.+.....+..  |. -.+...+++      +|.=..-+|..-..++
T Consensus       169 i~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~~~~nS~~~~~~~~~~~d~------vRpGi~lYG~~p~~~~  242 (384)
T 1xfc_A          169 LMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDL------VRPGIAVYGLSPVPAL  242 (384)
T ss_dssp             EECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSE------ECCSGGGGTCCSSGGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHCCC------CCCCCEEECCCCCCCC
T ss_conf             2433540332430556999999999998766407871255553035554185110342------3567303225677531


Q ss_pred             CCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             62001055089999997404----------------77469998265431024201024532337799943799970666
Q T0515           232 GEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSC  295 (365)
Q Consensus       232 GR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C  295 (365)
                      -..-..++..+.++|+.+|.                .+...+++.-|+...+.+.+...... ..   ..+.+.|.|.+|
T Consensus       243 ~~~~l~pv~~l~a~ii~ir~v~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~~~~v-~i---~g~~~pivG~vs  318 (384)
T 1xfc_A          243 GDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEV-LI---NGRRCPGVGRIC  318 (384)
T ss_dssp             CCTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGTTTCEE-EE---TTEEEEEESCCC
T ss_pred             CCCCCCCCHHEEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCCEE-EE---CCEEEEEEEEEC
T ss_conf             10146763000000100044379983465630203676403676101105753104778589-99---999957844885


Q ss_pred             CCCCEEECCC-CCC-CCCCCCEEEEECCC
Q ss_conf             8763543045-389-88977789982788
Q T0515           296 LAGDVFGEFR-FAE-ELKVGDRISFQDAA  322 (365)
Q Consensus       296 ~~~D~~~~~~-~lp-~l~~GD~l~~~~~G  322 (365)
                        +|.+.-+. ..| ++++||.+.++.-.
T Consensus       319 --MD~~~vDvt~~~~~~~~Gd~V~l~G~~  345 (384)
T 1xfc_A          319 --MDQFMVDLGPGPLDVAEGDEAILFGPG  345 (384)
T ss_dssp             --SSCEEEEEESSSCCCCTTCEEEEECSS
T ss_pred             --CCCEEEECCCCCCCCCCCCEEEEECCC
T ss_conf             --662799814887779999999997089


No 18 
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.70  E-value=2.7e-13  Score=103.12  Aligned_cols=318  Identities=13%  Similarity=0.073  Sum_probs=192.5

Q ss_pred             EEE-ECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECC
Q ss_conf             678-5589999999999999721798798720215----89899999998088-26772889999999707987277047
Q T0515             6 YYL-IDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSV   79 (365)
Q Consensus         6 ~~v-~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~   79 (365)
                      .|+ +|+++|++|++.+++..+ ++.+++--||||    -...|.+.+.+.|+ +|-|++..|....++.+....++...
T Consensus        12 t~~eIdl~al~~Ni~~i~~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~i~EA~~LR~~gi~~~Ilvl~   90 (391)
T 2vd8_A           12 TWVEVDLDAIYNNVTHIXEFIP-SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVLG   90 (391)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEECS
T ss_pred             EEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEC
T ss_conf             8999859999999999997479-998799999460365887999999998798999991699999999739999889972


Q ss_pred             CCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHH-H---HHHHH---
Q ss_conf             7886689999972880021898999999997258871131156777455434466788710131489-9---99997---
Q T0515            80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV-P---KVERV---  152 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~-~---~~~~~---  152 (365)
                      ...++++..+.+++...++.|.+++..+.+..+. ...+++...++.+.+          ++|+... +   .....   
T Consensus        91 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~-~~~~~vhlkiDTGM~----------RlG~~~~~e~~~~~~~l~~~  159 (391)
T 2vd8_A           91 PSPPRDINVAAENDVALTVFQXEWVDEAIXLWDG-SSTMXYHINFDSGMG----------RIGIRERXELXGFLXSLEGA  159 (391)
T ss_dssp             CCCGGGHHHHHHTTEEEECCCHHHHHHHHHHCCS-SCCEEEEEEBCSSCC----------SSSBCCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHC-CCCEEEEEEECCCCC----------CCCCCCHHHHHHHHHHHHHC
T ss_conf             8882666787751465312148899999998614-796489999528998----------58888289999999999728


Q ss_pred             -HCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHH---HHCCCCCEEEECCC---CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             -36904899850678-7677999999999999999---84456516650477---7898889788999999999861266
Q T0515           153 -MDRINGFMIHNNCE-NKDFGLFDRMLGEIEERFG---ALIARVDWVSLGGG---IHFTGDDYPVDAFSARLRAFSDRYG  224 (365)
Q Consensus       153 -~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~---~~~~~~~~idiGGG---~~~~~~~~~~~~~~~~i~~~~~~~~  224 (365)
                       ..++.|+..|..+- ..+.....+.++.+.+.+.   +.+.+...+.+...   +..+-..+++      +|.=..-+|
T Consensus       160 ~~l~l~Gi~SH~a~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~------vR~Gi~lYG  233 (391)
T 2vd8_A          160 PFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNA------VRIGIAMYG  233 (391)
T ss_dssp             TTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTE------EEESTTTTT
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCC------CCCCHHHCC
T ss_conf             99664022421376887313567889999999999998618983205522657663674135774------516853227


Q ss_pred             EEEEEECCC----EEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf             089997162----001055089999997404----------------774699982654310242010245323377999
Q T0515           225 VQIYLEPGE----ASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEG  284 (365)
Q Consensus       225 ~~l~~EpGR----~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~  284 (365)
                      ..-. .+.+    .-..++..+-++|+.+|+                ++...+++..|+...+.+.+...  ....   .
T Consensus       234 ~~p~-~~~~~~~~~~Lkpv~sl~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r~~s~~--~v~i---~  307 (391)
T 2vd8_A          234 LSPS-VEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF--EVLV---N  307 (391)
T ss_dssp             CCSC-TTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC--EEEE---T
T ss_pred             CCCC-CCCCCCCCCCCCEEEEEEEEHHHEEECCCCCCCCCCCEEECCCCEEEEEECCEECCCCCCCCCCC--EEEE---C
T ss_conf             7786-33244555343232655411100488369997786761761366589986647257644256899--8999---9


Q ss_pred             CEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC------HHHHHH---------HCCCCCCCCCEEEEEECCCEE
Q ss_conf             43799970666876354304538988977789982788------455132---------136788678808999778808
Q T0515           285 SHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA------GYTMVK---------KNWFNGVKMPAIAIRELDGSV  349 (365)
Q Consensus       285 ~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G------AY~~~~---------~s~fn~~~~p~~v~~~~dg~~  349 (365)
                      .+.+.|.|.+|  +|.+.-+.. .++++||.+.+....      +-..+.         -+..  -+|-+.++++ +|++
T Consensus       308 g~~~pivGris--MD~~~VDi~-~~v~~GD~v~l~G~~~~~~i~~~~~A~~~gti~yEll~~l--~~Rv~R~yv~-~g~~  381 (391)
T 2vd8_A          308 GXRVPIVGRVT--MDQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI--SFRVPRIFIR-NGXV  381 (391)
T ss_dssp             TEEEEEESCCC--SSCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS--CTTSCEEEEE-TTEE
T ss_pred             CEECCEEEEEC--CCEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC--CCCCCEEEEE-CCEE
T ss_conf             98751754763--543899899-9989999999978999877899999998789757586187--8888859997-9969


Q ss_pred             EEEE
Q ss_conf             9998
Q T0515           350 RTVR  353 (365)
Q Consensus       350 ~~ir  353 (365)
                      --++
T Consensus       382 ~~~~  385 (391)
T 2vd8_A          382 VEVI  385 (391)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9983


No 19 
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=99.68  E-value=2e-13  Score=104.01  Aligned_cols=297  Identities=13%  Similarity=0.070  Sum_probs=182.9

Q ss_pred             CEE-EECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEEC
Q ss_conf             567-855899999999999997217987987202158----9899999998088-2677288999999970798727704
Q T0515             5 PYY-LIDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYS   78 (365)
Q Consensus         5 P~~-v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~   78 (365)
                      |.| =+|+++|++|++.+++..+ ++.+++--||||.    ...|.+.+.++|+ +|-|++..|....++.+.+..++..
T Consensus         7 ~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~i~EA~~LR~~gi~~~Ilvl   85 (388)
T 1bd0_A            7 DTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL   85 (388)
T ss_dssp             SEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             78999969999999999997489-99979999816036488799999999869799997689999999971899848996


Q ss_pred             CCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH-HHHCCCE
Q ss_conf             778866899999728800218989999999972588711311567774554344667887101314899999-9736904
Q T0515            79 VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE-RVMDRIN  157 (365)
Q Consensus        79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~-~~~~~i~  157 (365)
                      ....++++..+++++...++.|.+.++.+.+..+. ...+++.+.++.+.++..-   ....+-....+... .....+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~vhLkiDTGM~RlG~---~~~e~~~~~~~~~~~~~~l~l~  161 (388)
T 1bd0_A           86 GASRPADAALAAQQRIALTVFRSDWLEEASALYSG-PFPIHFHLKMDTGMGRLGV---KDEEETKRIVALIERHPHFVLE  161 (388)
T ss_dssp             SCCCGGGHHHHHHTTEEEEECCHHHHHHHHHHCCC-SSCEEEEEEBCSSSCSSSB---CSHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCCCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCC---CHHHHHHHHHHHHHHCCCCEEE
T ss_conf             27876887764134543234049988767655414-7744899998168875686---5477899999999858896046


Q ss_pred             EEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC---CCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-
Q ss_conf             8998506787-6779999999999999998445651665047778---9888978899999999986126608999716-
Q T0515           158 GFMIHNNCEN-KDFGLFDRMLGEIEERFGALIARVDWVSLGGGIH---FTGDDYPVDAFSARLRAFSDRYGVQIYLEPG-  232 (365)
Q Consensus       158 Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpG-  232 (365)
                      |+..|..+-. .+.....+.+..+.......+.+...+.++..-+   .+...+|+      ++.=..-+|.  ...++ 
T Consensus       162 Gi~tHla~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anSa~~l~~~~~~~d~------vRpGi~lyG~--~p~~~~  233 (388)
T 1bd0_A          162 GLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNM------VRFGIAMYGL--APSPGI  233 (388)
T ss_dssp             EEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTE------EEECGGGGTC--CSCGGG
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCCCCCC------EEEEEEEEEC--CCCCCC
T ss_conf             88842567777771899999999999987434665316640769886497345773------4401677805--777665


Q ss_pred             ----CEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             ----2001055089999997404----------------77469998265431024201024532337799943799970
Q T0515           233 ----EASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICG  292 (365)
Q Consensus       233 ----R~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G  292 (365)
                          ..-..++..|-++|+.+|.                .+...+++..|+.+.+.+.+.. . ....   ..+.+.|.|
T Consensus       234 ~~~~~~~lkpv~sl~a~Ii~i~~~~~G~~vgYg~~~~~~~~~~iavv~iGYaDG~~r~~~~-~-~V~i---~g~~~pivG  308 (388)
T 1bd0_A          234 KPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQH-F-HVLV---DGQKAPIVG  308 (388)
T ss_dssp             GGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCGGGGG-C-EEEE---TTEEEEEES
T ss_pred             CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC-C-EEEE---CCEEEEEEE
T ss_conf             5455446544438999998878758997255476334577836987610513565301469-8-8999---999817864


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf             666876354304538988977789982788
Q T0515           293 KSCLAGDVFGEFRFAEELKVGDRISFQDAA  322 (365)
Q Consensus       293 ~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G  322 (365)
                      .+|  +|.+.-+..- ++++||.+.+..-.
T Consensus       309 ~vs--MD~~~vDvt~-~~~~GD~V~l~G~~  335 (388)
T 1bd0_A          309 RIC--MDQCMIRLPG-PLPVGTKVTLIGRQ  335 (388)
T ss_dssp             CCC--SSCEEEECSS-CCCTTCEEEEEEEE
T ss_pred             EEE--CCEEEEECCC-CCCCCCEEEEECCC
T ss_conf             871--3628998899-98999999998789


No 20 
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.65  E-value=2.2e-13  Score=103.76  Aligned_cols=285  Identities=14%  Similarity=0.080  Sum_probs=179.5

Q ss_pred             CEEE-ECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEEC
Q ss_conf             5678-5589999999999999721798798720215----89899999998088-2677288999999970798727704
Q T0515             5 PYYL-IDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYS   78 (365)
Q Consensus         5 P~~v-~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~   78 (365)
                      |.++ +|+++|++|++.+++... ++.+++--||||    -...|.+.+.+.|+ +|-|++..|....++.+....++..
T Consensus         8 ~~~leIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~i~EA~~LR~~g~~~~ilvl   86 (371)
T 3e5p_A            8 PTRLHIDTQAITENVQKECQRLP-EGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILIL   86 (371)
T ss_dssp             SCEEEECHHHHHHHHHHHHHSSC-SSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEEE
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEE
T ss_conf             98999969999999999998579-98979999955346478899999999879799998199999999971899975776


Q ss_pred             CCCCHHHHHHHHHCCCEECCCCHHHHHHHH-HHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHH-HHCCC
Q ss_conf             778866899999728800218989999999-9725887113115677745543446678871013148999999-73690
Q T0515            79 VAYGDNEIDEVVSHADKIIFNSISQLERFA-DKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER-VMDRI  156 (365)
Q Consensus        79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~-~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~-~~~~i  156 (365)
                      ....++++..+++++..+++.|.++++++. +.++.....++|.+.++.+.++...   ..........+.... ....+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~i~s~~~l~~~~~~~a~~~~~~~~vhlkiDTGM~RlG~---~~~ee~~~~~~~~~~~~~~~~  163 (371)
T 3e5p_A           87 SVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDTGMGRIGF---LTPEETKQAVRFVQSHKEFLW  163 (371)
T ss_dssp             EECCGGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBCSSSCSSSB---CSSHHHHHHHHHHHHSTTBCC
T ss_pred             ECCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC---CCHHHHHHHHHHHHHHHCEEC
T ss_conf             05787899999864981797358998888998888539944799998279873798---737888999999876206100


Q ss_pred             EEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             489985067876-7799999999999999984456516650477789---888978899999999986126608999716
Q T0515           157 NGFMIHNNCENK-DFGLFDRMLGEIEERFGALIARVDWVSLGGGIHF---TGDDYPVDAFSARLRAFSDRYGVQIYLEPG  232 (365)
Q Consensus       157 ~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~---~~~~~~~~~~~~~i~~~~~~~~~~l~~EpG  232 (365)
                      .|+..|..+... +.+...+.+..+.+...........+.+..+...   +...++                   +.-||
T Consensus       164 ~gi~th~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~~ns~~~~~~~~~~~d-------------------~vR~G  224 (371)
T 3e5p_A          164 EGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGN-------------------MIRYG  224 (371)
T ss_dssp             CEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTTSSCS-------------------EEEEC
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCC-------------------CEEEC
T ss_conf             20222101434336768999999999999862147642675063765428412466-------------------26403


Q ss_pred             CEE---------------EECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCC
Q ss_conf             200---------------1055089999997404----------------774699982654310242010245323377
Q T0515           233 EAS---------------ITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLP  281 (365)
Q Consensus       233 R~l---------------va~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~  281 (365)
                      ..+               ..++..+.++|+.+|+                .+...+++..|+...+.+.+...  .... 
T Consensus       225 i~lYG~~p~~~~~~~~~~lkpv~~l~a~Ii~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~l~~~--~v~i-  301 (371)
T 3e5p_A          225 VAMYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF--TVLV-  301 (371)
T ss_dssp             GGGGTCCTTTTSSCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC--EEES-
T ss_pred             CEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEECCCCC--EEEE-
T ss_conf             0124899876655632255321666984038898438886676642124666338997127304611034698--8999-


Q ss_pred             CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEC
Q ss_conf             999437999706668763543045389889777899827
Q T0515           282 NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQD  320 (365)
Q Consensus       282 ~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~  320 (365)
                        ..+.+.|.|.+|  +|.+.-+.. +++++||.+.++.
T Consensus       302 --~g~~~pivG~is--MD~~~vdvt-~~~~~GD~V~l~G  335 (371)
T 3e5p_A          302 --NGKRCEIVGRVC--MDQCMIRLA-EEVPVGPVVTLVG  335 (371)
T ss_dssp             --SSCEEEEESCCC--SSCEEEEES-SCCCSCCEEEEEE
T ss_pred             --CCEEEEEEEEEC--CCEEEEECC-CCCCCCCEEEEEE
T ss_conf             --999979860873--541799888-9999999999995


No 21 
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.64  E-value=1.2e-13  Score=105.46  Aligned_cols=291  Identities=14%  Similarity=0.074  Sum_probs=171.2

Q ss_pred             EEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCC-CEEECC
Q ss_conf             67855899999999999997217987987202158----9899999998088-26772889999999707987-277047
Q T0515             6 YYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKE-THAYSV   79 (365)
Q Consensus         6 ~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~-~i~~~~   79 (365)
                      .-.+|+++|++|++.+++...  +.+++--||||.    ...|.+++.++|+ +|-|++..|....++.+.+. +++..+
T Consensus        22 ~~~Idl~al~~N~~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~illl~~   99 (376)
T 3kw3_A           22 IATIDVRAIVANYRTLAQHVA--PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIALLN   99 (376)
T ss_dssp             EEEECHHHHHHHHHHHHHHHT--TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEETT
T ss_pred             EEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHCC
T ss_conf             999859999999999997579--983999996652516499999999986969999938899999997278530677617


Q ss_pred             CCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH-------HH
Q ss_conf             78866899999728800218989999999972588711311567774554344667887101314899999-------97
Q T0515            80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE-------RV  152 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~-------~~  152 (365)
                      ....++.+.+.+++...++.|.++++.+.+.+.......++.+.++.+.+          |+|+...+..+       ..
T Consensus       100 ~~~~~~~~~~~~~~~~~~i~s~~~l~~l~~~a~~~~~~~~vhLkvDTGM~----------RlG~~~~e~~~~i~~~~~~~  169 (376)
T 3kw3_A          100 GFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNMS----------RLGLDKKELQKLIKNPTIFE  169 (376)
T ss_dssp             CCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSCC----------SSSBCHHHHHHHHHCCTHHH
T ss_pred             CCCHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCC----------CCCCCHHHHHHHHHHHHHCC
T ss_conf             89778999987414564106599999999999972897059999658887----------56778156789998876414


Q ss_pred             HCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             36904899850678-7677999999999999999844565166504777-898889788999999999861266089997
Q T0515           153 MDRINGFMIHNNCE-NKDFGLFDRMLGEIEERFGALIARVDWVSLGGGI-HFTGDDYPVDAFSARLRAFSDRYGVQIYLE  230 (365)
Q Consensus       153 ~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~E  230 (365)
                      ...+.|+..|..+- ..+.......+..+.............+.-.+|. -.+...+++      +|.=..-+|..- ..
T Consensus       170 ~l~i~Gi~THfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSa~~~~~~~~~~d~------vR~Gi~lYG~~p-~~  242 (376)
T 3kw3_A          170 KAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDL------VRPGIALYGVDP-HG  242 (376)
T ss_dssp             HSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTE------ECCSGGGGTCCT-TC
T ss_pred             CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCC------CCCCEEEECCCC-CC
T ss_conf             65268897201233456737899999999999850775455576758987682321564------104147756877-53


Q ss_pred             CCCEEEECCEEEEEEEEEECCC----------------CCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             1620010550899999974047----------------746999826543102420102453233779994379997066
Q T0515           231 PGEASITKSTTLEVTVLDTLYN----------------GKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKS  294 (365)
Q Consensus       231 pGR~lva~ag~lit~V~~~k~~----------------~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~  294 (365)
                      .......+...+-++|+.+|+-                +...+++..|+...+.+.+.......+    ..+.+.|.|.+
T Consensus       243 ~~~~~l~pv~~l~s~i~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~~~~v~i----~g~~~pivGrv  318 (376)
T 3kw3_A          243 KHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSNKGTVYF----NGHKLPIVGHI  318 (376)
T ss_dssp             CSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGTTTCEEEE----TTEEEEBCSCC
T ss_pred             CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE----CCEEEEEEEEE
T ss_conf             42212465407887777888863888656576424688749985101246763424578867999----99980794073


Q ss_pred             CCCCCEEECCCC-CC-CCCCCCEEEEECC
Q ss_conf             687635430453-89-8897778998278
Q T0515           295 CLAGDVFGEFRF-AE-ELKVGDRISFQDA  321 (365)
Q Consensus       295 C~~~D~~~~~~~-lp-~l~~GD~l~~~~~  321 (365)
                      |  +|.+.-+.. +| ++++||.+.+..-
T Consensus       319 s--MD~~~vDvt~~~~~~~vGD~V~l~G~  345 (376)
T 3kw3_A          319 S--MDSIIVDATDLDKKPQRGDWVELIGP  345 (376)
T ss_dssp             C--SSCEEEECTTCSSCCCTTCEEEEEBT
T ss_pred             C--CCEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             3--42489977788777999999999809


No 22 
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.62  E-value=5.2e-13  Score=101.33  Aligned_cols=286  Identities=16%  Similarity=0.080  Sum_probs=173.1

Q ss_pred             EEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCC-CEEECC
Q ss_conf             67855899999999999997217987987202158----9899999998088-26772889999999707987-277047
Q T0515             6 YYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKE-THAYSV   79 (365)
Q Consensus         6 ~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN~----~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~-~i~~~~   79 (365)
                      .-.+|+++|++|++.+|+..   +.+++--||||.    ...+.+++.+ |+ +|-|++..|....++.+... +++..+
T Consensus         5 ~~eIdl~al~~N~~~lr~~~---~~ki~aVVKanAYGhG~~~ia~~L~~-g~~~faVa~~~Ea~~LR~~g~~~~il~l~~   80 (357)
T 1rcq_A            5 RALIDLQALRHNYRLAREAT---GARALAVIKADAYGHGAVRCAEALAA-EADGFAVACIEEGLELREAGIRQPILLLEG   80 (357)
T ss_dssp             EEEEEHHHHHHHHHHHHHHH---CSEEEEECHHHHHTTCHHHHHHHHTT-TCSEEEESSHHHHHHHHHTTCCSCEEETTC
T ss_pred             EEEEEHHHHHHHHHHHHCCC---CCCEEEEEEECCCCCCHHHHHHHHHH-CCCEEEEEEHHHHHHHHHHCCCCCEECCCC
T ss_conf             99984999999999997066---99499999665353879999999995-699799989999999997099642011001


Q ss_pred             CCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH-------HH
Q ss_conf             78866899999728800218989999999972588711311567774554344667887101314899999-------97
Q T0515            80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVE-------RV  152 (365)
Q Consensus        80 ~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~-------~~  152 (365)
                      ...+++...+.+++..+++.|.++++.+.+.....+  +++.+.++.+.+          ++|+...+..+       ..
T Consensus        81 ~~~~~~~~~~~~~~i~~~i~s~~~~~~l~~~~~~~~--~~vhLkvDTGM~----------RlG~~~~e~~~~~~~~~~~~  148 (357)
T 1rcq_A           81 FFEASELELIVAHDFWCVVHCAWQLEAIERASLARP--LNVWLKMDSGMH----------RVGFFPEDFRAAHERLRASG  148 (357)
T ss_dssp             CSSGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSC--EEEEEEBCSSSC----------SSSBCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC--EEEEEEECCCCC----------CCCCCHHHHHHHHHHHHHCC
T ss_conf             355778898886314656587999999997463664--369999726764----------33568378888899986414


Q ss_pred             HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEECC--C-CCCCCCCCCHHHHHHHHHHHHHCCCEE--
Q ss_conf             369048998506787-6779999999999999998445651665047--7-789888978899999999986126608--
Q T0515           153 MDRINGFMIHNNCEN-KDFGLFDRMLGEIEERFGALIARVDWVSLGG--G-IHFTGDDYPVDAFSARLRAFSDRYGVQ--  226 (365)
Q Consensus       153 ~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~~~~idiGG--G-~~~~~~~~~~~~~~~~i~~~~~~~~~~--  226 (365)
                      ...+.|+..|..+-. .+.....+.+..+.+......   ..+.+..  | +-.+-..+++      +|.=..=+|..  
T Consensus       149 ~~~~~gi~tH~a~ad~~~~~~~~~q~~~f~~~~~~~~---~~~h~aNS~~~l~~~~~~~d~------vR~Gi~lYG~~p~  219 (357)
T 1rcq_A          149 KVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQGLE---GEISLRNSPAVLGWPKVPSDW------VRPGILLYGATPF  219 (357)
T ss_dssp             CEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHTTCC---SCEECCCHHHHHHCTTSCCSE------ECCCGGGGTCCSS
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHHCCCCCCCCE------ECCCCCCCCCCCC
T ss_conf             5440345653033556203679999999999875113---321146839885484024862------4667201456787


Q ss_pred             EEEECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEE
Q ss_conf             9997162001055089999997404----------------774699982654310242010245323377999437999
Q T0515           227 IYLEPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMI  290 (365)
Q Consensus       227 l~~EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i  290 (365)
                      -...+-..-..++..+-++|+.+|+                .+...+++..|+...+.+.+.......+    ..+.+.|
T Consensus       220 ~~~~~~~~~lkpv~~l~a~i~~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~~~~v~i----~G~~~pi  295 (357)
T 1rcq_A          220 ERAHPLADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADGTLVFI----DGKPGRL  295 (357)
T ss_dssp             SSCCTTGGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCTTCEEEE----TTEEEEB
T ss_pred             CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCEEEE----CCEEEEE
T ss_conf             434454434651289986668989858999876543200257607998612001575410468829999----9999378


Q ss_pred             EECCCCCCCEEECCC-CCCCCCCCCEEEEECCC
Q ss_conf             706668763543045-38988977789982788
Q T0515           291 CGKSCLAGDVFGEFR-FAEELKVGDRISFQDAA  322 (365)
Q Consensus       291 ~G~~C~~~D~~~~~~-~lp~l~~GD~l~~~~~G  322 (365)
                      .|.+|  +|.+.-+. ..|+.++||.+.+.+-.
T Consensus       296 vGris--MD~~~vdvt~~~~~~~Gd~v~l~G~~  326 (357)
T 1rcq_A          296 VGRVS--MDMLTVDLTDHPQAGLGSRVELWGPN  326 (357)
T ss_dssp             CSCCC--SSCEEEECTTCTTCCTTCEEEEESSS
T ss_pred             ECEEC--CCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             57634--04389988899778999999997899


No 23 
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=99.61  E-value=1.7e-12  Score=97.95  Aligned_cols=280  Identities=14%  Similarity=0.038  Sum_probs=171.9

Q ss_pred             CEE-EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEEC
Q ss_conf             567-85589999999999999721798798720215----89899999998088-2677288999999970798727704
Q T0515             5 PYY-LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYS   78 (365)
Q Consensus         5 P~~-v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~   78 (365)
                      |.+ -+|+++|++|++.+|+..+  +.+++-.||||    -...|.+.+.+.|+ +|-|++..|....++.|....++..
T Consensus         9 ~t~leIdl~al~~N~~~ik~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~Ilvl   86 (380)
T 3co8_A            9 STRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFILIL   86 (380)
T ss_dssp             SCEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEEEC
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             87999979999999999996579--9829999974246478899999999869799999089999999973999837862


Q ss_pred             CCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCC-------HHHHHHH
Q ss_conf             778866899999728800218989999999972588711311567774554344667887101314-------8999999
Q T0515            79 VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEW-------DVPKVER  151 (365)
Q Consensus        79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~-------~~~~~~~  151 (365)
                      ....++++..+.++++..++.|.++++.+.+.....+  ++|.+.++.+.+          |+|+.       ..+.+..
T Consensus        87 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~~~~~~~~~~--~~vhLkiDTGM~----------RlG~~~~~~~~~~~~~l~~  154 (380)
T 3co8_A           87 GPIDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEK--LSVNLAVDTGMN----------RIGVRSKKDLKDEIEFLQE  154 (380)
T ss_dssp             SCCCGGGHHHHHHTTCEEEECCHHHHHHHHHHCTTCC--EEEEEEBCSSSC----------SSSBCSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCEEEEECCHHHHHHHHHHHCCCC--CCEEEEEECCCC----------CCCCCCHHHHHHHHHHHHH
T ss_conf             6867666567765056422024999999998631588--615689826888----------6676733668999999765


Q ss_pred             H--HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCC-CCEEEECCC-CCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             7--369048998506787-67799999999999999984456-516650477-789888978899999999986126608
Q T0515           152 V--MDRINGFMIHNNCEN-KDFGLFDRMLGEIEERFGALIAR-VDWVSLGGG-IHFTGDDYPVDAFSARLRAFSDRYGVQ  226 (365)
Q Consensus       152 ~--~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~-~~~idiGGG-~~~~~~~~~~~~~~~~i~~~~~~~~~~  226 (365)
                      .  ...+.|+..|..+-. .+.+...+.+..+.+.+..+... +..+.-.++ +....             .....++  
T Consensus       155 ~~~~l~v~Gi~THfa~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~ns~a~~~~~~-------------~~~~~~d--  219 (380)
T 3co8_A          155 HSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHVMNSGAAMYHSK-------------ELPGCNS--  219 (380)
T ss_dssp             CTTTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGG-------------GCTTSCS--
T ss_pred             HCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCHH-------------HCCCCCC--
T ss_conf             1135440258713566666664899999999999997446752023314276645802-------------2565433--


Q ss_pred             EEEECCCEE---------------EECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCC
Q ss_conf             999716200---------------1055089999997404----------------774699982654310242010245
Q T0515           227 IYLEPGEAS---------------ITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRE  275 (365)
Q Consensus       227 l~~EpGR~l---------------va~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~  275 (365)
                       +.-||..+               ..++..|-++|+.+|+                ++...+++..|+...+.+.+... 
T Consensus       220 -~vR~Gi~LYG~~p~~~~~~~~~~lkpv~~l~a~i~~ik~v~~G~~VGYg~~~~a~~~~~iavv~iGYaDG~~r~~~~~-  297 (380)
T 3co8_A          220 -IARVGTVVYGVEPSEGVLGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDF-  297 (380)
T ss_dssp             -EEEESTTTTTCCTTTTSSSCGGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC-
T ss_pred             -CCCCCCEEECCCCCCCCCCCHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCC-
T ss_conf             -457873125567874545710137606999411136788588996555663203787059999415125515204798-


Q ss_pred             CCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf             32337799943799970666876354304538988977789982788
Q T0515           276 TAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA  322 (365)
Q Consensus       276 ~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G  322 (365)
                       ....   ..+.+.|.|.+|  +|.+.-+.. .+.++||.+++..-.
T Consensus       298 -~Vli---~G~~~pivGris--MD~~~VDvt-~~~~vGD~V~l~G~~  337 (380)
T 3co8_A          298 -QLLI---DGQKCRQVGQIA--MDQMMVALP-HEYPIGTEVTLIGKS  337 (380)
T ss_dssp             -EEEE---TTEEEEEESCCC--SSCEEEEES-SCCCTTCEEEEEEEE
T ss_pred             -EEEE---CCEEEEECCEEC--CCCEEEECC-CCCCCCCEEEEEECC
T ss_conf             -7999---999924725724--471799899-999999999998589


No 24 
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.60  E-value=1.4e-12  Score=98.57  Aligned_cols=292  Identities=12%  Similarity=0.076  Sum_probs=175.8

Q ss_pred             CCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCC-CEEEC
Q ss_conf             856785589999999999999721798798720215----8989999999808826772889999999707987-27704
Q T0515             4 TPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMDGTTSSSLFEVRLGRERFGKE-THAYS   78 (365)
Q Consensus         4 TP~~v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~g~dv~S~~El~~a~~~~~~~-~i~~~   78 (365)
                      +..-.+|+++|++|++.+|+..  ++.+++--||||    -...+.+.+.+.+ +|-|++..|....++.+... +++.+
T Consensus        23 ~a~~~Idl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~~-~faVa~i~EA~~LR~~gi~~~ilil~   99 (379)
T 2rjg_A           23 AATVVINRRALRHNLQRLRELA--PASKMVAVVKANAYGHGLLETARTLPDAD-AFGVARLEEALRLRAGGITKPVLLLE   99 (379)
T ss_dssp             CSEEEEEHHHHHHHHHHHHHHS--TTSEEEEECHHHHHTTCHHHHHHHCTTCS-EEEESSHHHHHHHHHTTCCSCEEETT
T ss_pred             CEEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCC-EEEEEEHHHHHHHHHHCCCCCEEECC
T ss_conf             6699997999999999999668--99869999956425487899999997099-89995999999999738998722034


Q ss_pred             CCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHH------
Q ss_conf             77886689999972880021898999999997258871131156777455434466788710131489999997------
Q T0515            79 VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV------  152 (365)
Q Consensus        79 ~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~------  152 (365)
                      +...++++..+.+++...++.|.++++.+.+...+.+  +++.+.++.+.          .++|+...+.....      
T Consensus       100 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~~~--~~vhLkvDTGM----------~RlG~~~~e~~~~~~~~~~~  167 (379)
T 2rjg_A          100 GFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEP--VTVWMKLDTGM----------HRLGVRPEQAEAFYHRLTQC  167 (379)
T ss_dssp             CCSCGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSC--BCEEEEBCSSC----------CSSSBCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCC--EEEEEEEECCC----------CCCCCCCHHHHHHHHHHHHH
T ss_conf             6788788999997377157578999999998613898--07999980888----------87888830557899999872


Q ss_pred             --HCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE--
Q ss_conf             --369048998506787-677999999999999999844565166504777898889788999999999861266089--
Q T0515           153 --MDRINGFMIHNNCEN-KDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQI--  227 (365)
Q Consensus       153 --~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l--  227 (365)
                        ...+.|+..|..+-. .+.....+.+..+.+............|=+|=+..+...+++      +|.=..-+|..-  
T Consensus       168 ~~~l~~~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~hi~nSaa~~~~~~~~~d~------vRpGi~lYG~~p~~  241 (379)
T 2rjg_A          168 KNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDW------VRPGIILYGVSPLE  241 (379)
T ss_dssp             SSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCGGGCSSE------ECCCGGGGTCCSSS
T ss_pred             CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCC------CCCCCEEECCCCCC
T ss_conf             254421258846577654333899999999999984277421230563330686112452------15772266356543


Q ss_pred             EEE-CCCEEEECCEEEEEEEEEECCC----------------CCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEE
Q ss_conf             997-1620010550899999974047----------------74699982654310242010245323377999437999
Q T0515           228 YLE-PGEASITKSTTLEVTVLDTLYN----------------GKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMI  290 (365)
Q Consensus       228 ~~E-pGR~lva~ag~lit~V~~~k~~----------------~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i  290 (365)
                      ..+ +-+.-..++..+-++|+.+|.-                +...+++..|+...+.+.+.......+    ..+.+.|
T Consensus       242 ~~~~~~~~~Lkpv~sl~a~i~~v~~v~~G~~VgYg~~~~a~~d~~ia~vpiGYaDG~pR~~s~~~~Vli----~G~~~pi  317 (379)
T 2rjg_A          242 DRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLV----NGREVPI  317 (379)
T ss_dssp             SSCCGGGGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCTTCEEEE----TTEEEEB
T ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEE----CCEEEEE
T ss_conf             435433457630478667999889847998567787265258859999833764573544679947999----9999157


Q ss_pred             EECCCCCCCEEECCC-CCCCCCCCCEEEEECCC
Q ss_conf             706668763543045-38988977789982788
Q T0515           291 CGKSCLAGDVFGEFR-FAEELKVGDRISFQDAA  322 (365)
Q Consensus       291 ~G~~C~~~D~~~~~~-~lp~l~~GD~l~~~~~G  322 (365)
                      .|..|  +|.+.-+. ..|+.++||.+.++.-+
T Consensus       318 vGrv~--MD~~~vdvt~~~~~~~GD~V~l~G~~  348 (379)
T 2rjg_A          318 VGRVA--MDMICVDLGPQAQDKAGDPVILWGEG  348 (379)
T ss_dssp             CSCCC--SSCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred             EEEEC--CCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             65972--33289988898789999999997899


No 25 
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.59  E-value=9.7e-13  Score=99.58  Aligned_cols=288  Identities=13%  Similarity=0.100  Sum_probs=177.4

Q ss_pred             CCEE-EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCC-C-CEEEECHHHHHHHHHCCCCCCEE
Q ss_conf             8567-85589999999999999721798798720215----8989999999808-8-26772889999999707987277
Q T0515             4 TPYY-LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYM-D-GTTSSSLFEVRLGRERFGKETHA   76 (365)
Q Consensus         4 TP~~-v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g-~-g~dv~S~~El~~a~~~~~~~~i~   76 (365)
                      -|.| -+|+++|++|++.+++..+  +.+++-.||||    -...|.+.+.+.| + +|-|++..|....++.+.+..++
T Consensus         8 R~t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~gg~d~faVa~ieEA~~LR~~g~~~~Il   85 (395)
T 3hur_A            8 RPTWVSVDLDAAAHNLQEIREWTK--AKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLPIW   85 (395)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHHT--CSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSCEE
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCEEE
T ss_conf             998999859999999999995689--985999995622658889999999987899999992899999999669998399


Q ss_pred             ECCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHH---HHH----
Q ss_conf             0477886689999972880021898999999997258871131156777455434466788710131489---999----
Q T0515            77 YSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV---PKV----  149 (365)
Q Consensus        77 ~~~~k~~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~---~~~----  149 (365)
                      ......++++..++++++..++.|.++++.+.+..+    .+++.+.++.+.+          ++|+...   +.+    
T Consensus        86 vl~~~~~~e~~~~~~~~i~~~i~~~~~l~~~~~~~~----~~~vhLkiDTGM~----------RlG~~~~e~~~~~~~~~  151 (395)
T 3hur_A           86 VLGAWDYSDLKLFIDHDIVITIPSLAWLQNLPDFEG----TLKVSLAIDTGMT----------RIGFDKADEISAAKKII  151 (395)
T ss_dssp             ESSCCCGGGHHHHHHTTEEEEECCHHHHHTCCCCSS----CEEEEEEBCCSSC----------SSSBCCHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC----CCEEEEEEECCCC----------CCCCCHHHHHHHHHHHH
T ss_conf             837899799999987443233226887545553168----7359999807888----------78888588899999999


Q ss_pred             HH-HHCCCEEEEEEECCCCC-CHH---HHHHHHHHHHHHHHHHCCCCCEEEECCCCCC------CCCCCCHHHHHHHHHH
Q ss_conf             99-73690489985067876-779---9999999999999984456516650477789------8889788999999999
Q T0515           150 ER-VMDRINGFMIHNNCENK-DFG---LFDRMLGEIEERFGALIARVDWVSLGGGIHF------TGDDYPVDAFSARLRA  218 (365)
Q Consensus       150 ~~-~~~~i~Gih~H~gs~~~-~~~---~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~------~~~~~~~~~~~~~i~~  218 (365)
                      .. ....+.|+..|..+-.. +..   ...+.+..+.+...+.+.+...+.++.-...      +-..+++      +|.
T Consensus       152 ~~~~~l~l~Gi~SHla~ad~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~h~~nSa~~l~~~~~p~~~~d~------vR~  225 (395)
T 3hur_A          152 DKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAA------IRP  225 (395)
T ss_dssp             HHCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSE------ECC
T ss_pred             HHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCHHCCCE------EEE
T ss_conf             85788648999885266663454016899999999999998538874204423413355225770203634------750


Q ss_pred             HHHCCCEE-----EEEECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCCC
Q ss_conf             86126608-----9997162001055089999997404----------------77469998265431024201024532
Q T0515           219 FSDRYGVQ-----IYLEPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRETA  277 (365)
Q Consensus       219 ~~~~~~~~-----l~~EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~~  277 (365)
                      =..-++..     .- .+-..-..++..+-++|+.++.                ++...+++..|+.+.+.+.+... ..
T Consensus       226 Gi~lYG~~~~~~~~~-~~~~~~l~pv~sl~a~Ii~i~~~~~G~~vGYg~~~~~~~~~~ia~v~iGYaDG~~r~l~~~-~V  303 (395)
T 3hur_A          226 GQLISGVNVSNGELK-MPPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQKS-SV  303 (395)
T ss_dssp             CGGGGTCCTTTTSSC-CCTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGGGEEEE-EE
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCHHHHEEEEEEEEEECCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCC-EE
T ss_conf             220147666732224-5654444531220001103687258986973674026776158973465566742004798-89


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCC
Q ss_conf             337799943799970666876354304538988977789982788
Q T0515           278 KVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA  322 (365)
Q Consensus       278 ~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~G  322 (365)
                       ..   ..+.+.|.|.+|  +|.+.-+.. .++++||.+.+....
T Consensus       304 -li---~G~~~pivGris--MD~~~vDvt-~~~~vGD~V~l~G~~  341 (395)
T 3hur_A          304 -II---NGKRMPIIGRIT--MDQTMVKLD-RKYPIGTRVTLIGKD  341 (395)
T ss_dssp             -EE---TTEEEEBCSCCC--SSCEEEECS-SCCCTTCEEEEEESS
T ss_pred             -EE---CCEEEEEEEEEC--CCEEEEECC-CCCCCCCEEEEEECC
T ss_conf             -99---999988874883--452899898-999999999999489


No 26 
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.57  E-value=1e-11  Score=93.00  Aligned_cols=283  Identities=14%  Similarity=0.087  Sum_probs=173.2

Q ss_pred             EECHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             85589999999999999721798798720215----89899999998088-26772889999999707987277047788
Q T0515             8 LIDKAKLTRNMERIAHVREKSGAKALLALKCF----ATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKETHAYSVAYG   82 (365)
Q Consensus         8 v~d~~~i~~n~~~~~~~~~~~~~~i~yAvKaN----~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~i~~~~~k~   82 (365)
                      -+|+++|++|++.+++..+  +.+++--||||    -...|.+++.++|+ +|-|++..|....++.|....++....-.
T Consensus         7 ~IdL~ai~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Il~l~~~~   84 (361)
T 2dy3_A            7 KIDLDAIAHNTRVLKQMAG--PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWIWTP   84 (361)
T ss_dssp             EECHHHHHHHHHHHHHHHT--TSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECCCCT
T ss_pred             EEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             9879999999999984579--98399999655364789999999998695999984299999999708999768745898


Q ss_pred             HHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHH---HH----HHCC
Q ss_conf             6689999972880021898999999997258871131156777455434466788710131489999---99----7369
Q T0515            83 DNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKV---ER----VMDR  155 (365)
Q Consensus        83 ~~~i~~a~~~g~~i~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~---~~----~~~~  155 (365)
                      +++++.+++++..+.+-|..+++.+.+...   ..+++.+.++.+.+          ++|+...+..   ..    ....
T Consensus        85 ~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~---~~~~vhLkiDTGM~----------RlG~~~~e~~~~~~~~~~~~~l~  151 (361)
T 2dy3_A           85 EQDFRAAIDRNIDLAVISPAHAKALIETDA---EHIRVSIKIDSGLH----------RSGVDEQEWEGVFSALAAAPHIE  151 (361)
T ss_dssp             TSCHHHHHTTTCEEEECSHHHHHHHHTSCC---SCEEEEEEBCCSSC----------SSSBCHHHHHHHHHHHHTCTTEE
T ss_pred             HHHHHHHHHHCEEEEEEHHHHHHHHHHHCC---CCCEEEEEECCCCC----------CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             589999875030235532888889998617---88549999768997----------67889899998888887534752


Q ss_pred             CEEEEEEECCCC-CCHHHHHHHHHHHHHHH---HHHCCC-------------------CCEEEECCCCCCCCCCCCHHHH
Q ss_conf             048998506787-67799999999999999---984456-------------------5166504777898889788999
Q T0515           156 INGFMIHNNCEN-KDFGLFDRMLGEIEERF---GALIAR-------------------VDWVSLGGGIHFTGDDYPVDAF  212 (365)
Q Consensus       156 i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~---~~~~~~-------------------~~~idiGGG~~~~~~~~~~~~~  212 (365)
                      +.|+..|..+-. .+.....+.++++.+.+   .+.+..                   .+++-.|-++-. +.+.+    
T Consensus       152 ~~gi~TH~a~ad~~d~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lYG-~~p~~----  226 (361)
T 2dy3_A          152 VTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYG-LEPVA----  226 (361)
T ss_dssp             EEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGT-CCSST----
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCHHCCCCCCCCEEEEC-CCCCC----
T ss_conf             5778987415786430369999999999999877527875055551446766493210671334547864-67864----


Q ss_pred             HHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEECC----------------CCCEEEEECCCCCCCCCCHHCCCCC
Q ss_conf             999999861266089997162001055089999997404----------------7746999826543102420102453
Q T0515           213 SARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLY----------------NGKNLAIVDSSIEAHMLDLLIYRET  276 (365)
Q Consensus       213 ~~~i~~~~~~~~~~l~~EpGR~lva~ag~lit~V~~~k~----------------~~~~~~i~d~g~~~~~~~~~~~~~~  276 (365)
                                 +    .++   -..++..+-++|+.+|.                ++...+++..|+...+.+.+.....
T Consensus       227 -----------~----~~~---~l~pv~~l~a~ii~i~~~~~G~~vgYg~~~~a~~~~~iavi~iGYaDG~~r~~~~~~~  288 (361)
T 2dy3_A          227 -----------G----LEH---GLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFS  288 (361)
T ss_dssp             -----------T----CCC---SCCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGGTTTCE
T ss_pred             -----------C----CCC---CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf             -----------4----323---3676402131300357614898656565422467715999722135675432589837


Q ss_pred             CCCCCCCCCEEEEEEECCCCCCCEEECCCC-CC-CCCCCCEEEEECCCHHH-HHHHCCCCC
Q ss_conf             233779994379997066687635430453-89-88977789982788455-132136788
Q T0515           277 AKVLPNEGSHSYMICGKSCLAGDVFGEFRF-AE-ELKVGDRISFQDAAGYT-MVKKNWFNG  334 (365)
Q Consensus       277 ~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~-lp-~l~~GD~l~~~~~GAY~-~~~~s~fn~  334 (365)
                      ..+    ..+.+.|.|.+|  +|.+.-+.. .| ++++||.+.+..-...+ ..++.+.+.
T Consensus       289 V~i----~g~~~pivG~is--MD~~~vDvt~~~~~v~~Gd~V~l~G~~~~~~~~~a~~~~t  343 (361)
T 2dy3_A          289 VTI----DGLDYPQVGRVC--MDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDT  343 (361)
T ss_dssp             EEE----TTEEEEEESCCC--SSCEEEEEETCTTCCCTTCEEEEESTTSCCHHHHHHHTTS
T ss_pred             EEE----CCEEEEEEEEEC--CCEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf             999----999903872864--7648998668845589999999978999999999998789


No 27 
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=98.46  E-value=7.6e-06  Score=55.37  Aligned_cols=210  Identities=18%  Similarity=0.115  Sum_probs=120.9

Q ss_pred             CCCCEEEECHH---HHHHHHHHHHHHHH---------CCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHH
Q ss_conf             88856785589---99999999999972---------179879872021589899999998088-267728899999997
Q T0515             2 IETPYYLIDKA---KLTRNMERIAHVRE---------KSGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRE   68 (365)
Q Consensus         2 ~gTP~~v~d~~---~i~~n~~~~~~~~~---------~~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~   68 (365)
                      ..||..++|..   .|++|++++++-..         ..++++.--+|+.+.+.| ..+.+.|+ +|-++-..|+.....
T Consensus        10 ~~~~~~~~d~~~~~~i~~nl~~v~~ri~~a~~~agR~p~~v~L~aVvK~h~~~~v-a~a~~~G~~~fg~a~vqEa~~k~~   88 (282)
T 3cpg_A           10 KNLANEVIDDARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEI-MAAIDAGVRMIGENRPQEVTAKAE   88 (282)
T ss_dssp             CCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHH-HHHHHTTCCCEEESCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             4431000587889999999999999999999981999011699999789899999-999986982111004999999999


Q ss_pred             C-------------------CC-CCCE---EECCCCCHHHHHHHHHCCC-EECCCCHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf             0-------------------79-8727---7047788668999997288-002189899999999725887113115677
Q T0515            69 R-------------------FG-KETH---AYSVAYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQV  124 (365)
Q Consensus        69 ~-------------------~~-~~~i---~~~~~k~~~~i~~a~~~g~-~i~iDs~~el~~i~~~~~~~~v~iRi~p~~  124 (365)
                      .                   +. ..++   +.++. ..+.+..++.... ..++||++.++.+.+.+......++|.+.+
T Consensus        89 ~l~~~~~~a~~~~~~~lr~~~~~~~~i~~~~ig~~-q~~~~~~~~~~~~~~~sVds~~~a~~l~~~a~~~~~~~~V~l~V  167 (282)
T 3cpg_A           89 GLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQL-QSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEV  167 (282)
T ss_dssp             HHHHHHHHTTEEECCC------CCEEECEEECSCC-CGGGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEB
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             76664322100000000012345760576047746-67899999874580655698999999999999769985389998


Q ss_pred             CCCCCCCCCCCCCCHHCCCC---HHHHHHH----HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HHHHC----CC
Q ss_conf             74554344667887101314---8999999----73690489985067876779999999999999---99844----56
Q T0515           125 SSSSFDLADPARPFSRLGEW---DVPKVER----VMDRINGFMIHNNCENKDFGLFDRMLGEIEER---FGALI----AR  190 (365)
Q Consensus       125 ~~~~~~~~~~~~~~~kfg~~---~~~~~~~----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~---~~~~~----~~  190 (365)
                      +.+...        .+.+.+   ..+.+..    .++.+.|+..|.++ ..+++...+.++.+.+.   +.+.+    ..
T Consensus       168 dtG~~~--------~~~~~~~~e~~~~~~~i~~~~~l~~~GlmTH~a~-add~~~~~~~f~~l~~~~~~l~~~~~~~~~~  238 (282)
T 3cpg_A          168 NESGEE--------SKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAH-VHDETVIRRGFSHLRKTRDLILASGEPGTDR  238 (282)
T ss_dssp             CCSSCT--------TSSSBCGGGHHHHHHHHHTCTTEEEEEEECCCCC-SSCHHHHHHHHHHHHHHHHHHHHHCCTTCTT
T ss_pred             ECCCCC--------CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             048987--------6689999999999999997799985458850487-7885779999999999999999818997688


Q ss_pred             CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEC
Q ss_conf             516650477789888978899999999986126608999716200105
Q T0515           191 VDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASITK  238 (365)
Q Consensus       191 ~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~  238 (365)
                      +..+..|.  .   .|  ++   ..+     +.+.+ ++=||.+|-++
T Consensus       239 ~~~lSmGm--S---~d--~~---~AI-----~~G~t-~VRiG~~lfG~  270 (282)
T 3cpg_A          239 CRELSMGM--T---GD--ME---LAI-----AEGST-IVRVGTAIFGE  270 (282)
T ss_dssp             CCEEECCC--T---TT--HH---HHH-----HTTCS-EEEESTTTC--
T ss_pred             CCEECCCC--C---CC--HH---HHH-----HCCCC-EEECCCCCCCC
T ss_conf             89754886--6---00--99---999-----86999-89828510128


No 28 
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=93.07  E-value=0.39  Score=25.11  Aligned_cols=142  Identities=13%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHHHHC-----------CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCC--E
Q ss_conf             589999999999999721-----------79879872021589899999998088-267728899999997079872--7
Q T0515            10 DKAKLTRNMERIAHVREK-----------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKET--H   75 (365)
Q Consensus        10 d~~~i~~n~~~~~~~~~~-----------~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~~~~~~--i   75 (365)
                      ..+.|..|++.+++-...           ..+++.-..|+-|...| +.+.+.|. .|..+-..|+..-....++++  .
T Consensus        10 ~~~~l~~~~~~v~~~i~~a~~~~~~~r~~~~v~L~aVsK~~~~~~i-~~~~~~G~~~fGEnrvQE~~~K~~~l~~~~~wH   88 (256)
T 1ct5_A           10 RKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDI-QILYDHGVREFGENYVQELIEKAKLLPDDIKWH   88 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHH-HHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEE
T ss_conf             6999999999999999999987148999576699999799899999-999985996011245999999998737895598


Q ss_pred             EECCCCCHHHHHHHHHCC-CE--ECCCCHHHHHHHHHHHCC-------CCCEEECCCCCCCCCCCCCCCCCCCHHCCCCH
Q ss_conf             704778866899999728-80--021898999999997258-------87113115677745543446678871013148
Q T0515            76 AYSVAYGDNEIDEVVSHA-DK--IIFNSISQLERFADKAAG-------IARGLRLNPQVSSSSFDLADPARPFSRLGEWD  145 (365)
Q Consensus        76 ~~~~~k~~~~i~~a~~~g-~~--i~iDs~~el~~i~~~~~~-------~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~  145 (365)
                      |.| ..-.+.++.++... +.  =++||+..++.+.+.+..       ..+.+-||..            +..+|.|+..
T Consensus        89 ~IG-~LQ~NKvk~~~~~~~~~~IhSVDsl~la~~L~~~a~k~~~~~~~~~vlIQVNi~------------~E~sK~G~~~  155 (256)
T 1ct5_A           89 FIG-GLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTS------------HEDQKSGLNN  155 (256)
T ss_dssp             ECS-CCCGGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCS------------SSCCSSSBCC
T ss_pred             EEC-CCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC------------CCCCCCCCCC
T ss_conf             878-997500899970112215512354999999999999847877872489999658------------7667789993


Q ss_pred             H----HHHHH------HHCCCEEEEEEECC
Q ss_conf             9----99999------73690489985067
Q T0515           146 V----PKVER------VMDRINGFMIHNNC  165 (365)
Q Consensus       146 ~----~~~~~------~~~~i~Gih~H~gs  165 (365)
                      .    ...+.      .++++.||..|...
T Consensus       156 ~~~~~~l~e~~~~~~l~~L~l~GLMTi~p~  185 (256)
T 1ct5_A          156 EAEIFEVIDFFLSEECKYIKLNGLMTIGSW  185 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCSEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf             899999999999864878763580541688


No 29 
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=92.48  E-value=0.47  Score=24.60  Aligned_cols=176  Identities=15%  Similarity=0.036  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHH-HH---HCCCCC--CEEECCCCC
Q ss_conf             9999999999999721--79879872021589899999998088-267728899999-99---707987--277047788
Q T0515            12 AKLTRNMERIAHVREK--SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRL-GR---ERFGKE--THAYSVAYG   82 (365)
Q Consensus        12 ~~i~~n~~~~~~~~~~--~~~~i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~El~~-a~---~~~~~~--~i~~~~~k~   82 (365)
                      ..++++++..-.....  ..+++.-..|.-|...| +.+.++|. .|.=.-..|+.. +.   ...+++  -+|.|+-=+
T Consensus         9 ~~I~~~I~~a~~~~gR~~~~V~LvaVSK~~~~~~I-~~a~~~G~r~fGENrvQE~~~K~~~l~~~~~~~i~WHfIG~LQs   87 (234)
T 1w8g_A            9 AQVRDKISAAATRCGRSPEEITLLAVSKTKPASAI-AEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQS   87 (234)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGCEEEEECTTSCHHHH-HHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEECSCCCG
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf             99999999999980999788699999788899999-99998799521006347788888988653045723322134303


Q ss_pred             HHHHHHHHHCCCEE-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCH---HHHHHH----HHC
Q ss_conf             66899999728800-2189899999999725887113115677745543446678871013148---999999----736
Q T0515            83 DNEIDEVVSHADKI-IFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWD---VPKVER----VMD  154 (365)
Q Consensus        83 ~~~i~~a~~~g~~i-~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~---~~~~~~----~~~  154 (365)
                       +.++.++.+-..| ++||+.-+++|.+.+......++|...+..        .+..+|.|+..   .+.++.    .++
T Consensus        88 -NKvk~iv~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVNi--------s~E~~K~G~~p~e~~~~~~~~~~~~~l  158 (234)
T 1w8g_A           88 -NKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINI--------SDENSKSGIQLAELDELAAAVAELPRL  158 (234)
T ss_dssp             -GGHHHHHHHCSEEEEECSHHHHHHHHHHSCTTSCCEEEEEEECC--------SCTTCCCSBCGGGHHHHHHHHHTCTTE
T ss_pred             -HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE--------CCCCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf             -22110000233566654288999998765640676117889830--------466566452211078899875137856


Q ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH---HCCCCCEEEECC
Q ss_conf             90489985067876779999999999999998---445651665047
Q T0515           155 RINGFMIHNNCENKDFGLFDRMLGEIEERFGA---LIARVDWVSLGG  198 (365)
Q Consensus       155 ~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~~~~idiGG  198 (365)
                      ++.|+..- +....+.......+.++.+.+.+   ....+..|.+|=
T Consensus       159 ~~~GLMti-~~~~~d~~~~~~~f~~l~~~~~~l~~~~~~~~~LSMGM  204 (234)
T 1w8g_A          159 RLRGLMAI-PAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGM  204 (234)
T ss_dssp             EEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCC
T ss_pred             EEEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHH
T ss_conf             78787323-78730378877569999999999872379989776730


No 30 
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=73.75  E-value=3.7  Score=18.82  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=46.7

Q ss_pred             CCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             3779994379997066687635430453898897778998278845513213678867880899977880899983
Q T0515           279 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE  354 (365)
Q Consensus       279 ~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~  354 (365)
                      ..+.+...+|.|-|+-= |+.+-...-.-...++||.|++..-+-+......+|    .|.++++++++.+.-+|+
T Consensus        25 v~NG~Rf~TYvI~g~~G-Sg~I~lNGAAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vd~~N~i~~i~~   95 (96)
T 1vc3_B           25 ITNGARLTTYALPGERG-SGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNL----KPTVVLVDERNRILEVRK   95 (96)
T ss_dssp             TTTCCEEEEECEEECTT-TTCEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTTC----CCEEEEECTTCCEEEEEE
T ss_pred             CCCCCEEEEEEEECCCC-CCEEEECCHHHEECCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEEEC
T ss_conf             98994898799963676-687985585642359999999998774798897268----777999999998998526


No 31 
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=70.82  E-value=4.2  Score=18.48  Aligned_cols=65  Identities=22%  Similarity=0.259  Sum_probs=42.5

Q ss_pred             CCCCCCCEEEEEEECCCCCCCEEECC-CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEE
Q ss_conf             37799943799970666876354304-5389889777899827884551321367886788089997788089
Q T0515           279 VLPNEGSHSYMICGKSCLAGDVFGEF-RFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVR  350 (365)
Q Consensus       279 ~~~~~~~~~~~i~G~~C~~~D~~~~~-~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~  350 (365)
                      ..+.+...+|.|-|+-  |+- ++-+ -.-...++||.|++..-+-+......+|    +|.++++++++.+.
T Consensus        24 v~NG~Rf~TYvI~g~~--sg~-I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vd~~N~i~   89 (97)
T 1uhe_A           24 VNNGERFSTYVILGKK--RGE-ICVNGAAARKVAIGDVVIILAYASMNEDEINAH----KPSIVLVDEKNEIL   89 (97)
T ss_dssp             TTTCCEEEEECEEECS--TTC-EEEEGGGGGGCCTTCEEEEEEEEEECHHHHHHC----CCEEEEECTTSCEE
T ss_pred             CCCCCEEEEEEEECCC--CCE-EEECCHHHEECCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEE
T ss_conf             9899588879995277--887-986886861259999999998164698998258----87799999999773


No 32 
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=69.33  E-value=4.7  Score=18.19  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=49.6

Q ss_pred             ECCCCHHHHHHHHHHHCCCCCE-EECCCCCCCCCCCCCCCCCCCHHCCCCH----HHHHHHHHC----CCEEEEEEECCC
Q ss_conf             0218989999999972588711-3115677745543446678871013148----999999736----904899850678
Q T0515            96 IIFNSISQLERFADKAAGIARG-LRLNPQVSSSSFDLADPARPFSRLGEWD----VPKVERVMD----RINGFMIHNNCE  166 (365)
Q Consensus        96 i~iDs~~el~~i~~~~~~~~v~-iRi~p~~~~~~~~~~~~~~~~~kfg~~~----~~~~~~~~~----~i~Gih~H~gs~  166 (365)
                      +...|+..+.++.+.....++. .|+.-.    ..+....    ..++...    .+..+..+.    .=.-+.||.|.-
T Consensus        55 ~~~~Nl~dl~~il~~n~~~~I~~yRlSS~----lfP~~s~----~~~~~~~~~~~~~~l~~iG~~ak~~~iRLS~HPgqf  126 (301)
T 2j6v_A           55 KAAENLRDLERILRFNADHGFALFRIGQH----LIPFASH----PLFPYDWEGAYEEELARLGALARAFGQRLSMHPGQY  126 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCEEECCGG----GSTTTTS----TTCCSCHHHHHHHHHHHHHHHHHHTTCEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCC----CCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf             99998999999999999759719984776----4756457----555874689999999999999998092699779986


Q ss_pred             ----CCCHHHHHHHHHHH---HHHHHHHCCCCCE--EEECCCC
Q ss_conf             ----76779999999999---9999984456516--6504777
Q T0515           167 ----NKDFGLFDRMLGEI---EERFGALIARVDW--VSLGGGI  200 (365)
Q Consensus       167 ----~~~~~~~~~~l~~~---~~~~~~~~~~~~~--idiGGG~  200 (365)
                          ..+.+...+.+.++   +.+++.+|..-..  |.+||..
T Consensus       127 ~vL~S~~~~Vve~SI~dL~~Ha~l~d~mG~~~~~inIH~gg~y  169 (301)
T 2j6v_A          127 VNPGSPDPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAY  169 (301)
T ss_dssp             CCTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCT
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             3016998899999999999999999980687665588605766


No 33 
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=68.96  E-value=4.8  Score=18.14  Aligned_cols=98  Identities=7%  Similarity=0.022  Sum_probs=62.9

Q ss_pred             HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC---EEE----ECHHHHHHH---HHCCCCCCEEECCCCCHHHHHHHH
Q ss_conf             9999721798798720215898999999980882---677----288999999---970798727704778866899999
Q T0515            21 IAHVREKSGAKALLALKCFATWSVFDLMRDYMDG---TTS----SSLFEVRLG---RERFGKETHAYSVAYGDNEIDEVV   90 (365)
Q Consensus        21 ~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g---~dv----~S~~El~~a---~~~~~~~~i~~~~~k~~~~i~~a~   90 (365)
                      +|+.+..-...+-.-+ .-++|.+.+.+...|+-   +|.    -+..++...   .+..+...++.-|...+..+..++
T Consensus        30 ~k~~L~~G~~~~G~~~-~~~sp~~~Ei~a~~GfDfv~ID~EHg~~~~~~~~~~i~a~~~~~~~~iVRvp~~~~~~i~r~L  108 (287)
T 2v5j_A           30 FKAALKAGRPQIGLWL-GLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLL  108 (287)
T ss_dssp             HHHHHHTTCCEEEEEE-CSCCHHHHHHHHTSCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEE-CCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf             9999987998799875-789969999997389799998067799999999999998743599606546889999999998


Q ss_pred             HCCCE-E---CCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             72880-0---21898999999997258871131
Q T0515            91 SHADK-I---IFNSISQLERFADKAAGIARGLR  119 (365)
Q Consensus        91 ~~g~~-i---~iDs~~el~~i~~~~~~~~v~iR  119 (365)
                      +.|+. |   .++|.+|.+.+.+.++=.+.+.|
T Consensus       109 D~Ga~GIivP~V~t~eea~~~v~a~rypP~G~R  141 (287)
T 2v5j_A          109 DVGTQTLLVPMVQNADEAREAVRATRYPPAGIR  141 (287)
T ss_dssp             HTTCCEEEESCCCSHHHHHHHHHHTSCTTTSCC
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             379986794674999999999982647999999


No 34 
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=68.75  E-value=4.8  Score=18.11  Aligned_cols=183  Identities=7%  Similarity=-0.087  Sum_probs=98.2

Q ss_pred             HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC---EEE----ECHHHHHHHH---HCCCCCCEEECCCCCHHHHHHH
Q ss_conf             99999721798798720215898999999980882---677----2889999999---7079872770477886689999
Q T0515            20 RIAHVREKSGAKALLALKCFATWSVFDLMRDYMDG---TTS----SSLFEVRLGR---ERFGKETHAYSVAYGDNEIDEV   89 (365)
Q Consensus        20 ~~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g---~dv----~S~~El~~a~---~~~~~~~i~~~~~k~~~~i~~a   89 (365)
                      ++|+.+..-...+-.-+. -++|.+.+.+...|.-   +|.    .+..++....   +..+...++.-|.-.+..+..+
T Consensus         9 ~~k~~L~~g~~~~G~~~~-~~sp~~~e~~a~~G~D~v~iD~EH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~   87 (256)
T 1dxe_A            9 KFKAALAAKQVQIGCWSA-LSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL   87 (256)
T ss_dssp             HHHHHHHTTCCEEEEEEC-SCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf             999999789964988767-8998999999816999999806889999999999999997469975997899983799999


Q ss_pred             HHCCCE-E---CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEEEEECC
Q ss_conf             972880-0---218989999999972588711311567774554344667887101314899999973690489985067
Q T0515            90 VSHADK-I---IFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRINGFMIHNNC  165 (365)
Q Consensus        90 ~~~g~~-i---~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~i~Gih~H~gs  165 (365)
                      ++.|+. +   .++|.+|++++.+.++-.+.+.|-..           .......+|.. .+.......++.     +.-
T Consensus        88 LD~Ga~gi~vP~V~sae~a~~~v~~~~ypP~G~Rg~~-----------~~~~a~~~g~~-~~y~~~an~~~~-----vi~  150 (256)
T 1dxe_A           88 LDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVS-----------VSHRANMFGTV-ADYFAQSNKNIT-----ILV  150 (256)
T ss_dssp             HHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCC-----------SSSGGGGGGTS-TTHHHHHTTSCE-----EEE
T ss_pred             HHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----------CCHHHHHCCCH-HHHHHHCCCCCE-----EEE
T ss_conf             8559887664654889999999998157999866766-----------20233303862-789986064766-----999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC-------CCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             8767799999999999999984456516650477-------789888978899999999986126608
Q T0515           166 ENKDFGLFDRMLGEIEERFGALIARVDWVSLGGG-------IHFTGDDYPVDAFSARLRAFSDRYGVQ  226 (365)
Q Consensus       166 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG-------~~~~~~~~~~~~~~~~i~~~~~~~~~~  226 (365)
                      ++++++....    +.+++.  -+-++.|-+|-+       .+..+.+..+....+.+.+.+++.+..
T Consensus       151 ~IEt~~av~n----~~eI~a--v~gvD~l~iG~~DLs~slG~~~~~~~p~v~~ai~~i~~a~~~~G~~  212 (256)
T 1dxe_A          151 QIESQQGVDN----VDAIAA--TEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKP  212 (256)
T ss_dssp             EECSHHHHHT----HHHHHT--STTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCHHHHHH----HHHHHC--CCCCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf             9777999995----999956--8777779986206888736677778878999999999999984994


No 35 
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=65.03  E-value=5.7  Score=17.65  Aligned_cols=187  Identities=12%  Similarity=0.017  Sum_probs=99.4

Q ss_pred             HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCE---EE----ECHHHHHHH---HHCCCCCCEEECCCCCHHHHHHHH
Q ss_conf             99997217987987202158989999999808826---77----288999999---970798727704778866899999
Q T0515            21 IAHVREKSGAKALLALKCFATWSVFDLMRDYMDGT---TS----SSLFEVRLG---RERFGKETHAYSVAYGDNEIDEVV   90 (365)
Q Consensus        21 ~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~---dv----~S~~El~~a---~~~~~~~~i~~~~~k~~~~i~~a~   90 (365)
                      +|+.+..-...+-.-+ .-++|.+.+.+...|.-+   |.    -+..++...   ....+...++.-|...+..+..++
T Consensus         9 lk~~L~~g~~~~G~~~-~~~sp~~~e~l~~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~~vRvp~~~~~~i~r~L   87 (267)
T 2vws_A            9 FKERLRKGEVQIGLWL-SSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVL   87 (267)
T ss_dssp             HHHHHHTTCCEEEEEE-CSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEE-CCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH
T ss_conf             9999987998799986-899979999998389899998067898989999999998614699746881578679999998


Q ss_pred             HCCCE-E---CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             72880-0---2189899999999725887113115677745543446678871013148999999736904899850678
Q T0515            91 SHADK-I---IFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRINGFMIHNNCE  166 (365)
Q Consensus        91 ~~g~~-i---~iDs~~el~~i~~~~~~~~v~iRi~p~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~i~Gih~H~gs~  166 (365)
                      +.|+. |   .++|.+|.+++.+.++=.+.+-|=   +.......        .++....+..+....++.-+     .|
T Consensus        88 D~Ga~GIivP~v~s~eea~~~v~~~rypP~G~Rg---~g~~~~~~--------~~~~~~~~y~~~~n~~~~~i-----~q  151 (267)
T 2vws_A           88 DIGAQTLLIPMVDTAEQARQVVSATRYPPYGERG---VGASVARA--------ARWGRIENYMAQVNDSLCLL-----VQ  151 (267)
T ss_dssp             HTTCCEEEECCCCSHHHHHHHHHHTSCTTTSCCC---SCGGGSGG--------GGGGTSTTHHHHHHHHCEEE-----EE
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCC---CCCCCCCC--------CCCCCHHHHHHHHHHHCCEE-----EE
T ss_conf             3899889989808889999999843279999999---98764210--------14675578999998630000-----01


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC-------CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             76779999999999999998445651665047-------77898889788999999999861266089997
Q T0515           167 NKDFGLFDRMLGEIEERFGALIARVDWVSLGG-------GIHFTGDDYPVDAFSARLRAFSDRYGVQIYLE  230 (365)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGG-------G~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~E  230 (365)
                      +++.+....    +.++..-  +-++.|=+|-       |+|..+.+..+....+.+.+.+++++..+-+-
T Consensus       152 IEt~~av~n----leeI~av--~GvD~i~iGp~DLs~slG~pg~~~~p~~~~ai~~v~~~~~~~gk~~G~~  216 (267)
T 2vws_A          152 VESKTALDN----LDEILDV--EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL  216 (267)
T ss_dssp             CCSHHHHHT----HHHHHTS--TTCCEEEECHHHHHHHTTCSSSCCTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCHHHHHH----HHHHHCC--CCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             067899997----9987456--8985356771788873399988898159999999999999879976763


No 36 
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A
Probab=63.65  E-value=6.1  Score=17.48  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=45.9

Q ss_pred             CCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             3779994379997066687635430453898897778998278845513213678867880899977880899983
Q T0515           279 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE  354 (365)
Q Consensus       279 ~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~  354 (365)
                      ..+.+...+|.|-|+-= |+.+-...-.-...++||.|+|..-+-+......+|    .|.++++++++.+.-+++
T Consensus        66 v~NG~Rf~TYvI~g~~g-Sg~I~lNGAAAr~~~~GD~vII~sYa~~~~~e~~~~----~P~vv~vde~N~i~~~~~  136 (143)
T 1pqh_A           66 VTNGKRFSTYAIAAERG-SRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTW----RPNVAYFEGDNEMKRTAK  136 (143)
T ss_dssp             TTTCCEEEEEEEEECTT-CCCEECCGGGGGTCCTTCEEEEEEEEEEEHHHHTTC----CCEEEEEETTTEECC---
T ss_pred             CCCCCEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEECC
T ss_conf             99997799999963588-875874688885479999999998865896685278----766999999998868336


No 37 
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=63.03  E-value=6.2  Score=17.41  Aligned_cols=71  Identities=14%  Similarity=0.088  Sum_probs=47.4

Q ss_pred             CCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             3779994379997066687635430453898897778998278845513213678867880899977880899983
Q T0515           279 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE  354 (365)
Q Consensus       279 ~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~  354 (365)
                      ..+.+...+|.|-|+-- |+.+-...-.-...++||.|+|..-+-+......+|    .|.++++++++.+--++.
T Consensus        49 v~NG~Rf~TYvI~g~~G-Sg~I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vd~~N~i~~~~~  119 (139)
T 2c45_A           49 IDNGARLVTYAITGERG-SGVIGINGAAAHLVHPGDLVILIAYATMDDARARTY----QPRIVFVDAYNKPIDMGH  119 (139)
T ss_dssp             TTTCCEEEECEEEECTT-TTCEEEESSTTTTSCTTCEEEEEECCEEEHHHHHSC----CCEEEECCTTCC------
T ss_pred             CCCCCEEEEEEEECCCC-CCEEEECCHHHEECCCCCEEEEEEECCCCHHHHHCC----CCEEEEECCCCCEEEECC
T ss_conf             67994888789865789-744875483440348899999998053698997168----777999899998878457


No 38 
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=58.77  E-value=7.4  Score=16.94  Aligned_cols=69  Identities=13%  Similarity=0.086  Sum_probs=32.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             899850678767799999999999999984456516650477789888978899999999986126608999
Q T0515           158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYL  229 (365)
Q Consensus       158 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~  229 (365)
                      ++++|.++|.  +...+..++.+.. +.+...++..-++||||+...........+..+....-..+++++.
T Consensus       759 ~l~v~~sTQ~--p~~~r~~iA~~Lg-lp~~~VrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVklv~  827 (1332)
T 1v97_A          759 EMELFVSTQN--AMKTQSFVAKMLG-VPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCML  827 (1332)
T ss_dssp             CEEEEECCSC--HHHHHHHHHHHHT-SCGGGEEEEECCCSCCTTTTSSTTHHHHHHHHHHHHHHSSCEEEEC
T ss_pred             EEEEEECCCC--HHHHHHHHHHHHC-CCHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             6999989957--9999999999978-9889989990887717888887660999999999998399989997


No 39 
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomics, PSI, protein structure initiative; 1.57A {Enterococcus faecalis V583} SCOP: b.161.1.1
Probab=57.45  E-value=7.6  Score=16.84  Aligned_cols=29  Identities=10%  Similarity=0.216  Sum_probs=23.1

Q ss_pred             CCCCCEEECCCCCCCCCCCCEEEEECCCH
Q ss_conf             68763543045389889777899827884
Q T0515           295 CLAGDVFGEFRFAEELKVGDRISFQDAAG  323 (365)
Q Consensus       295 C~~~D~~~~~~~lp~l~~GD~l~~~~~GA  323 (365)
                      |.++.+......+|++++||.|.|..-||
T Consensus       101 ~lpG~I~v~~~~~P~i~vG~~I~ii~~~~  129 (129)
T 2f9h_A          101 VIRNGVYLTPHQLPKITIGTTIDYLVNGA  129 (129)
T ss_dssp             SCTTEEEEESCSCCCCCTTCEEEEEC---
T ss_pred             CCCCEEEECCCCCCCCCCCCEEEEEECCC
T ss_conf             77986998788899788999999996789


No 40 
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=52.80  E-value=9.2  Score=16.32  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=35.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             899850678767799999999999999984456516650477789888978899999999986126608999
Q T0515           158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYL  229 (365)
Q Consensus       158 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~  229 (365)
                      .+++|.+||.  +......+..+.. +.+...++..-.+||||+......+....+..+...+. .+++++.
T Consensus       206 ~l~v~~~tQ~--p~~~~~~vA~~lg-lp~~~V~V~~~~~GGgFG~K~~~~~~~~~aa~aa~~~g-rPVk~~~  273 (769)
T 1rm6_A          206 MLTLNTTTQV--PYYVHLKVAACLQ-MDSARIRVIKPFLGGGFGARTEALHFEIIAGLLARKAK-GTVRLLQ  273 (769)
T ss_dssp             EEEEEECCSC--HHHHHHHHHHHHT-CCGGGEEEECCBCCCCTTTTSSCCHHHHHHHHHHHHHT-SEEEEEC
T ss_pred             EEEEECCCCC--CHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCC-CCCEEEC
T ss_conf             0467235677--1888876544311-14541499703332122055555516666666662169-9844201


No 41 
>1izc_A Macrophomate synthase intermolecular diels- alderase; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=50.61  E-value=9.9  Score=16.10  Aligned_cols=100  Identities=6%  Similarity=-0.005  Sum_probs=62.5

Q ss_pred             HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCE---EE----ECHHHHHH---HHH-CC--CCCCEEECCCCCHHHHH
Q ss_conf             99997217987987202158989999999808826---77----28899999---997-07--98727704778866899
Q T0515            21 IAHVREKSGAKALLALKCFATWSVFDLMRDYMDGT---TS----SSLFEVRL---GRE-RF--GKETHAYSVAYGDNEID   87 (365)
Q Consensus        21 ~~~~~~~~~~~i~yAvKaN~~~~vl~~l~~~g~g~---dv----~S~~El~~---a~~-~~--~~~~i~~~~~k~~~~i~   87 (365)
                      +|+++..++-.++=..=.-|++.+.+++...|.-+   |.    .+..++..   +.+ .+  ....++.-|...+..+.
T Consensus        32 l~~~~~~~~~~~~G~~~~~ps~~~ae~~a~~G~D~v~iD~EHg~~~~~~l~~~i~a~~~~~~~~~~~iVRvp~~~~~~i~  111 (339)
T 1izc_A           32 LKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLS  111 (339)
T ss_dssp             HHHHHHCGGGCEEEEEECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHH
T ss_pred             HHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf             99987557984898731589969999997699899998578899999999999999998478998618848988879999


Q ss_pred             HHHHCCCE-E---CCCCHHHHHHHHHHHCCCCCEEEC
Q ss_conf             99972880-0---218989999999972588711311
Q T0515            88 EVVSHADK-I---IFNSISQLERFADKAAGIARGLRL  120 (365)
Q Consensus        88 ~a~~~g~~-i---~iDs~~el~~i~~~~~~~~v~iRi  120 (365)
                      .+++.|+. |   .|+|.+|.+++.+.++=.+.+.|=
T Consensus       112 ~~LD~Ga~GIivP~V~s~eeA~~~V~a~rypP~G~Rg  148 (339)
T 1izc_A          112 TALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRS  148 (339)
T ss_dssp             HHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCC
T ss_pred             HHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             9971799989977869999999999974028888867


No 42 
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=49.89  E-value=10  Score=16.03  Aligned_cols=67  Identities=9%  Similarity=-0.022  Sum_probs=32.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             89985067876779999999999999998445651665047778988897889999999998612660899
Q T0515           158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIY  228 (365)
Q Consensus       158 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  228 (365)
                      .++++.++|.  +......+.++.. +.....++..-.+||||+..... .....+..+.......+++++
T Consensus       229 ~l~v~~~tQ~--p~~~~~~iA~~lg-lp~~~V~V~~~~~GGgFG~K~~~-~~~~~~a~~aa~~~grPVkl~  295 (803)
T 1ffv_B          229 DLTTYITSQA--PHVVRTVVSMLSG-IPESKVRIVSPDIGGGFGNKVGI-YPGYVCAIVASIVLGRPVKWV  295 (803)
T ss_dssp             EEEEEECCSC--HHHHHHHHHHHHC-CCGGGEEEECCCCSCCTTTTSSC-CHHHHHHHHHHHHHTSCEEEE
T ss_pred             EEEEEECCCC--HHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEE
T ss_conf             7999957622--1134433333315-78724899956635768888765-369999999998518986998


No 43 
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=49.05  E-value=11  Score=15.94  Aligned_cols=11  Identities=27%  Similarity=0.504  Sum_probs=5.0

Q ss_pred             EECCCCCCCCC
Q ss_conf             50477789888
Q T0515           195 SLGGGIHFTGD  205 (365)
Q Consensus       195 diGGG~~~~~~  205 (365)
                      ++||||+....
T Consensus       223 ~~GGgFG~k~~  233 (777)
T 2w3s_B          223 RMGGGFGGKES  233 (777)
T ss_dssp             CCSCCTTTTTT
T ss_pred             CCCCCCCCCCC
T ss_conf             65567787655


No 44 
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=46.30  E-value=12  Score=15.67  Aligned_cols=82  Identities=15%  Similarity=-0.012  Sum_probs=39.9

Q ss_pred             HHHHCCCEEEEEEECCCCCCHHHHHHHHHHH---HHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH---HHHCC
Q ss_conf             9973690489985067876779999999999---99999844565166504777898889788999999999---86126
Q T0515           150 ERVMDRINGFMIHNNCENKDFGLFDRMLGEI---EERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRA---FSDRY  223 (365)
Q Consensus       150 ~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~---~~~~~~~~~~~~~idiGGG~~~~~~~~~~~~~~~~i~~---~~~~~  223 (365)
                      ...+..+.+++.+..-...+.+...+.++.+   .+...+++.+.=.+.-|+.......+.......+.+++   +.+++
T Consensus        56 ~~~gl~~~s~~~~~~~~~~~~~~~~~~~~~~k~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~  135 (278)
T 1i60_A           56 QTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPY  135 (278)
T ss_dssp             HTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98199389996777778999899999999999999999982939899926988777787999999999999999999974


Q ss_pred             CEEEEEEC
Q ss_conf             60899971
Q T0515           224 GVQIYLEP  231 (365)
Q Consensus       224 ~~~l~~Ep  231 (365)
                      ++++.+||
T Consensus       136 gi~l~iE~  143 (278)
T 1i60_A          136 GVKIALEF  143 (278)
T ss_dssp             TCEEEEEC
T ss_pred             CCEEEEEE
T ss_conf             99899983


No 45 
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=38.92  E-value=13  Score=15.42  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=18.2

Q ss_pred             CCCCCEEEEEECCCEEEEEEECCHHHHHHHC
Q ss_conf             8678808999778808999836879998734
Q T0515           334 GVKMPAIAIRELDGSVRTVREFTYADYEQSL  364 (365)
Q Consensus       334 ~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~~  364 (365)
                      ..+.|-.+++++||..     -..||||++|
T Consensus        68 ~i~~~~~lvLeeDGT~-----VddEeYF~tL   93 (122)
T 1d4b_A           68 LLNGVLTLVLEEDGTA-----VDSEDFFQLL   93 (122)
T ss_dssp             SCCSSCEEEETTTTEE-----ECSTHHHHHS
T ss_pred             CCCCCEEEEEECCCCE-----ECCHHHHHCC
T ss_conf             9998708999479979-----8558888417


No 46 
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=37.64  E-value=16  Score=14.82  Aligned_cols=37  Identities=8%  Similarity=0.007  Sum_probs=21.2

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             9999997369048998506787677999999999999
Q T0515           146 VPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEE  182 (365)
Q Consensus       146 ~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~  182 (365)
                      .+.+...+..-..+-+-.|-.....+.|.+.++.+.+
T Consensus       195 i~~~r~~g~~~i~~DlIyGlPgqT~e~~~~tl~~~~~  231 (457)
T 1olt_A          195 LNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE  231 (457)
T ss_dssp             HHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999984255340340477998426778999999984


No 47 
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=37.42  E-value=15  Score=15.03  Aligned_cols=16  Identities=19%  Similarity=0.327  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCEEEEEC
Q ss_conf             5389889777899827
Q T0515           305 RFAEELKVGDRISFQD  320 (365)
Q Consensus       305 ~~lp~l~~GD~l~~~~  320 (365)
                      ..+|++++|||+.++-
T Consensus        31 ~lv~~~~vGDyVLVH~   46 (75)
T 2z1c_A           31 DLMPDTKPGDWVIVHT   46 (75)
T ss_dssp             TTSTTCCTTCEEEEET
T ss_pred             EEECCCCCCCEEEEEE
T ss_conf             9608999898999941


No 48 
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=36.36  E-value=16  Score=14.69  Aligned_cols=60  Identities=7%  Similarity=-0.073  Sum_probs=24.9

Q ss_pred             CCCCCHHHHHHHHHCCC-CEEEE--CHHHHHH---HHHCCCCCCEEECCCCCHHHHHHHHHCCCEE
Q ss_conf             21589899999998088-26772--8899999---9970798727704778866899999728800
Q T0515            37 KCFATWSVFDLMRDYMD-GTTSS--SLFEVRL---GRERFGKETHAYSVAYGDNEIDEVVSHADKI   96 (365)
Q Consensus        37 KaN~~~~vl~~l~~~g~-g~dv~--S~~El~~---a~~~~~~~~i~~~~~k~~~~i~~a~~~g~~i   96 (365)
                      +......+.+.+.+.|. .+|+.  ++.=++.   ..+.+++-.+=.|...+.+.++.+++.|+.+
T Consensus        26 ~~~~a~~~~~al~~~Gi~~iEItl~t~~a~~~i~~l~~~~p~~~vGaGTV~~~e~~~~a~~aGa~F   91 (214)
T 1wbh_A           26 KLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQF   91 (214)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             999999999999987998899947986799999999997798624557445489999999827787


No 49 
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=33.00  E-value=19  Score=14.35  Aligned_cols=12  Identities=17%  Similarity=0.382  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q T0515            12 AKLTRNMERIAH   23 (365)
Q Consensus        12 ~~i~~n~~~~~~   23 (365)
                      +.++++++++.+
T Consensus       628 ~~~~~ai~~l~~  639 (2051)
T 2uv8_G          628 AGMTAAIDSVVS  639 (2051)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999995


No 50 
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=32.21  E-value=19  Score=14.27  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             EEEEEECCCCCCCEEECCCCCC-CCCCCCEEEEECCC
Q ss_conf             7999706668763543045389-88977789982788
Q T0515           287 SYMICGKSCLAGDVFGEFRFAE-ELKVGDRISFQDAA  322 (365)
Q Consensus       287 ~~~i~G~~C~~~D~~~~~~~lp-~l~~GD~l~~~~~G  322 (365)
                      -|.|.|.|  +..+|-.+...| -+++||.|-|...|
T Consensus       194 GW~iIGrT--p~~lfd~~~~~p~ll~~GD~VrF~~Ig  228 (228)
T 3mml_B          194 GWQLIGHT--DAVMFDVNRDKPALLTPGMWVQFRAVG  228 (228)
T ss_dssp             CSEEEEEE--CSCSBCTTSSSSBSCCTTCEEEEEECC
T ss_pred             CCEEECCC--CHHHHCCCCCCCCCCCCCCEEEEEECC
T ss_conf             34486625--614208899997135999989999789


No 51 
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=30.82  E-value=20  Score=14.12  Aligned_cols=50  Identities=10%  Similarity=-0.073  Sum_probs=27.7

Q ss_pred             ECHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCEE--CCCCHHHHHHHHH
Q ss_conf             288999999970798727704778866899999728800--2189899999999
Q T0515            58 SSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVSHADKI--IFNSISQLERFAD  109 (365)
Q Consensus        58 ~S~~El~~a~~~~~~~~i~~~~~k~~~~i~~a~~~g~~i--~iDs~~el~~i~~  109 (365)
                      -+...++.|...|.+  .+.+|+..++-++.+.++++.+  -+-+++|+.+-.+
T Consensus        71 ~~~~~~~~a~~aGa~--fivsP~~~~~v~~~a~~~~~~~iPGv~TpsEi~~A~~  122 (205)
T 1wa3_A           71 TSVEQCRKAVESGAE--FIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK  122 (205)
T ss_dssp             CSHHHHHHHHHHTCS--EEECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC--EEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHH
T ss_conf             237889999853642--7757999999999998649975166186788999998


No 52 
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=29.93  E-value=21  Score=14.03  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             HHCCCCCCCCCEEEEEECCCEEEEEEE-CCHHHHHHHC
Q ss_conf             213678867880899977880899983-6879998734
Q T0515           328 KKNWFNGVKMPAIAIRELDGSVRTVRE-FTYADYEQSL  364 (365)
Q Consensus       328 ~~s~fn~~~~p~~v~~~~dg~~~~ir~-~~~~d~~~~~  364 (365)
                      +...|+...-|..++++++|.+..++- -+.+|...++
T Consensus        93 ~~~~~~v~~~P~~~lid~~G~i~~~~g~~~~~~l~~~l  130 (136)
T 1zzo_A           93 VWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV  130 (136)
T ss_dssp             HHHHTTCCSSSEEEEECTTCCEEEEESCCCHHHHHHHH
T ss_pred             HHHHCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHH
T ss_conf             99984998056799996998499998999999999999


No 53 
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=28.09  E-value=22  Score=13.82  Aligned_cols=77  Identities=8%  Similarity=-0.068  Sum_probs=44.3

Q ss_pred             EEEEECCCCCHHHHHHHHHCCC-CEEEECHH--HH---HHHHHCCCCCCEEECCCCCHHHHHHHHHCCCEECC--CCHHH
Q ss_conf             9872021589899999998088-26772889--99---99997079872770477886689999972880021--89899
Q T0515            32 ALLALKCFATWSVFDLMRDYMD-GTTSSSLF--EV---RLGRERFGKETHAYSVAYGDNEIDEVVSHADKIIF--NSISQ  103 (365)
Q Consensus        32 i~yAvKaN~~~~vl~~l~~~g~-g~dv~S~~--El---~~a~~~~~~~~i~~~~~k~~~~i~~a~~~g~~i~i--Ds~~e  103 (365)
                      +...........+.+++.+.|. -+|+.-..  =+   +..++.+|+-.+=.|...+.+.++.+++.|+.|.+  ..-.|
T Consensus        22 vlr~~~~~~a~~~~~al~~~Gi~~iEITl~t~~a~~~I~~l~~~~p~~~vGaGTVl~~e~~~~a~~aGA~FivSP~~~~~  101 (224)
T 1vhc_A           22 VIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPK  101 (224)
T ss_dssp             EECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHH
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEECCCCCHH
T ss_conf             99689999999999999987999899967882699999999982898458764036579999999716878778988899


Q ss_pred             HHHHH
Q ss_conf             99999
Q T0515           104 LERFA  108 (365)
Q Consensus       104 l~~i~  108 (365)
                      +-+..
T Consensus       102 v~~~a  106 (224)
T 1vhc_A          102 IVKLC  106 (224)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999


No 54 
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=27.82  E-value=16  Score=14.82  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=19.2

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             489985067876779999999999999998445651665047
Q T0515           157 NGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGG  198 (365)
Q Consensus       157 ~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~~~~idiGG  198 (365)
                      .|+++|.+.+..+.+.+.+.++.+..+-..+...+.-+|++.
T Consensus       211 IG~Q~H~~~~~~~~~~i~~~l~~~~~lg~~l~v~ITElDV~~  252 (348)
T 1w32_A          211 VGFQMHVMNDYPSIANIRQAMQKIVALSPTLKIKITELDVRL  252 (348)
T ss_dssp             EEECCEEESSSSCHHHHHHHHHHHHTTCSSCEEEEEEEEEES
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             024631057899999999999999972899716998877626


No 55 
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=27.05  E-value=22  Score=13.94  Aligned_cols=15  Identities=13%  Similarity=0.131  Sum_probs=11.6

Q ss_pred             CCCCCCCCCEEEEEC
Q ss_conf             389889777899827
Q T0515           306 FAEELKVGDRISFQD  320 (365)
Q Consensus       306 ~lp~l~~GD~l~~~~  320 (365)
                      ..|++++|||+.++-
T Consensus        38 ~~~ev~vGDyVLVH~   52 (90)
T 2ot2_A           38 ENGQPRVGQWVLVHV   52 (90)
T ss_dssp             TTSCBCTTCEEEEET
T ss_pred             CCCCCCCCCEEEEEH
T ss_conf             776457688999961


No 56 
>3bww_A Protein of unknown function DUF692/COG3220; YP_719350.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Haemophilus somnus 129PT}
Probab=26.43  E-value=11  Score=15.80  Aligned_cols=138  Identities=14%  Similarity=0.082  Sum_probs=71.0

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEECC----CCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             0489985067876779999999999999998445-----651665047----7789888978899999999986126608
Q T0515           156 INGFMIHNNCENKDFGLFDRMLGEIEERFGALIA-----RVDWVSLGG----GIHFTGDDYPVDAFSARLRAFSDRYGVQ  226 (365)
Q Consensus       156 i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~idiGG----G~~~~~~~~~~~~~~~~i~~~~~~~~~~  226 (365)
                      ..|+++.+||...-...|.+.++.+   +++..+     ++.+-..+|    -+|.+|.+..+...++.++.+-+..+..
T Consensus        59 ~HGv~LSlG~~~~ld~~~L~~l~~l---~~~~~~~~~SeHL~~~~~~g~~~dLLPlP~t~e~l~~v~~ri~~vQd~l~rp  135 (307)
T 3bww_A           59 IHGLSLSLGGQAPLDKELLSSIKAM---IKQYNTPFFSDHLSFCECDGHLYDLLPMPFTDEAVKHTAARIREVQDFLEIQ  135 (307)
T ss_dssp             EBCSCCCTTCSSCCCHHHHHHHHHH---HHHTTCCCCEECSCC---------CCCBCCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHH---HHHHCCCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             6267505678998899999999999---9987878675001142168754665786765999999999999999986897


Q ss_pred             EEEECCCEEEECCEEEEEEEEEE---CCCCCEEEEECCC------CCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             99971620010550899999974---0477469998265------43102420102453233779994379997066687
Q T0515           227 IYLEPGEASITKSTTLEVTVLDT---LYNGKNLAIVDSS------IEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLA  297 (365)
Q Consensus       227 l~~EpGR~lva~ag~lit~V~~~---k~~~~~~~i~d~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~  297 (365)
                      +.+|--.+.+.....-+++.-..   -++..-.+.+|-+      .|+...++.-   +....|-+......|+|.+.+.
T Consensus       136 lllEN~s~Y~~~~~~~m~E~eFl~~l~~~tgcgLLLDvnNvyvna~Nhg~~Dp~~---yL~~lPl~rV~eIHlAG~~~~~  212 (307)
T 3bww_A          136 ISVENTSYYLHSETSTMNEVEFLNAIVQEANCGIHLDVNNIYVNAVNHGLLDPHV---FIDNVDLKRVNYIHIAGHDDEH  212 (307)
T ss_dssp             CEEECCCCSCBCTTCSSCHHHHHHHHHHHHTCEEEEEHHHHHHHHHHHCCSCHHH---HHHHSCGGGEEEEEECC-----
T ss_pred             EEEECCHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHCCCCCHHH---HHHHCCHHHHHHHHHCCCCCCC
T ss_conf             6995424304788787789999999999609809997015677643068999999---9873899987743331665434


Q ss_pred             CC
Q ss_conf             63
Q T0515           298 GD  299 (365)
Q Consensus       298 ~D  299 (365)
                      ..
T Consensus       213 ~~  214 (307)
T 3bww_A          213 AA  214 (307)
T ss_dssp             --
T ss_pred             CC
T ss_conf             55


No 57 
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, HAD-superfamily hydrolase, putative B-phosphoglucomutase, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=25.15  E-value=25  Score=13.49  Aligned_cols=10  Identities=0%  Similarity=0.019  Sum_probs=3.6

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999997217
Q T0515            19 ERIAHVREKS   28 (365)
Q Consensus        19 ~~~~~~~~~~   28 (365)
                      +.+..++...
T Consensus        24 ~a~~~~~~~~   33 (229)
T 2fdr_A           24 QVESRLLTEA   33 (229)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
T ss_conf             9999999986


No 58 
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=25.05  E-value=26  Score=13.47  Aligned_cols=10  Identities=10%  Similarity=0.069  Sum_probs=4.6

Q ss_pred             EEEEEECCCC
Q ss_conf             7987202158
Q T0515            31 KALLALKCFA   40 (365)
Q Consensus        31 ~i~yAvKaN~   40 (365)
                      |++|..+++-
T Consensus       894 KPwFG~~~~G  903 (2060)
T 2uva_G          894 KVWFGRNSAG  903 (2060)
T ss_dssp             SEETTBCTTS
T ss_pred             CCCCCCCCCC
T ss_conf             7774547888


No 59 
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=24.54  E-value=26  Score=13.41  Aligned_cols=100  Identities=10%  Similarity=0.016  Sum_probs=56.6

Q ss_pred             CEEEECHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHCCC-CEEEE--CHHHHHHH---HHCCCCCCEEE
Q ss_conf             56785589999999999999721798-79872021589899999998088-26772--88999999---97079872770
Q T0515             5 PYYLIDKAKLTRNMERIAHVREKSGA-KALLALKCFATWSVFDLMRDYMD-GTTSS--SLFEVRLG---RERFGKETHAY   77 (365)
Q Consensus         5 P~~v~d~~~i~~n~~~~~~~~~~~~~-~i~yAvKaN~~~~vl~~l~~~g~-g~dv~--S~~El~~a---~~~~~~~~i~~   77 (365)
                      |-.-++.....+.+..+   +....+ -+...........+.+++.+.|+ -+|+.  |+.-++..   ++.+|+-.+=.
T Consensus         6 ~~~~~~m~~~~~~i~~~---~~~~~iipvi~~~~~~~a~~~a~al~~~Gi~~iEitl~tp~a~~~i~~l~~~~p~~~iGa   82 (225)
T 1mxs_A            6 PQPKLSMADKAARIDAI---CEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGA   82 (225)
T ss_dssp             ----CCHHHHHHHHHHH---HHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCCHHHHHHHHHHH---HHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             99965688899999999---986987899974999999999999998699889995898049999999997589838976


Q ss_pred             CCCCCHHHHHHHHHCCCEECC--CCHHHHHHH
Q ss_conf             477886689999972880021--898999999
Q T0515            78 SVAYGDNEIDEVVSHADKIIF--NSISQLERF  107 (365)
Q Consensus        78 ~~~k~~~~i~~a~~~g~~i~i--Ds~~el~~i  107 (365)
                      |...+.+.++.+++.|+.+.+  ..-.|+-..
T Consensus        83 GTV~~~~~~~~a~~aGa~FivsP~~~~~v~~~  114 (225)
T 1mxs_A           83 GTVLDRSMFAAVEAAGAQFVVTPGITEDILEA  114 (225)
T ss_dssp             ECCCSHHHHHHHHHHTCSSEECSSCCHHHHHH
T ss_pred             EECCCHHHHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf             51367999999997898199779899999999


No 60 
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=21.93  E-value=29  Score=13.09  Aligned_cols=19  Identities=11%  Similarity=0.211  Sum_probs=7.4

Q ss_pred             HHHHHHHHHCCCEEEEEEC
Q ss_conf             9999998612660899971
Q T0515           213 SARLRAFSDRYGVQIYLEP  231 (365)
Q Consensus       213 ~~~i~~~~~~~~~~l~~Ep  231 (365)
                      .+.+++.....++.+++|+
T Consensus       198 ~~~i~~~~~~~g~D~vid~  216 (325)
T 3jyn_A          198 AKRVLELTDGKKCPVVYDG  216 (325)
T ss_dssp             HHHHHHHTTTCCEEEEEES
T ss_pred             HHHHHHHHCCCCCCEEEEC
T ss_conf             9999997189995389989


No 61 
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein structure initiative; HET: MSE; 1.30A {Bacteroides fragilis nctc 9343}
Probab=21.54  E-value=30  Score=13.04  Aligned_cols=49  Identities=18%  Similarity=0.226  Sum_probs=30.7

Q ss_pred             CEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHC
Q ss_conf             789982788455132136788678808999778808999836879998734
Q T0515           314 DRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL  364 (365)
Q Consensus       314 D~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~~  364 (365)
                      ++.+..+.+.. ......|+-...|..++++.||.+. .|.-++++....|
T Consensus        92 ~~~~~~d~~~~-~~~~~~~~v~~~P~~~liD~~G~Iv-~~~~~~~~ie~~L  140 (142)
T 3eur_A           92 EWTNGYDKELV-IKNKNLYDLRAIPTLYLLDKNKTVL-LKDATLQKVEQYL  140 (142)
T ss_dssp             TSEEEECTTCH-HHHTTCSCCTTCSEEEEECTTCBEE-EEEECHHHHHHHH
T ss_pred             CCCEEECCCCC-HHHHHHCCCCCCCEEEEECCCCEEE-EEECCHHHHHHHH
T ss_conf             98566546310-2467762766764699996999899-8629989999986


No 62 
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=20.89  E-value=31  Score=12.95  Aligned_cols=19  Identities=5%  Similarity=-0.115  Sum_probs=9.5

Q ss_pred             CCHHHHHHHHHCCC-CEEEE
Q ss_conf             89899999998088-26772
Q T0515            40 ATWSVFDLMRDYMD-GTTSS   58 (365)
Q Consensus        40 ~~~~vl~~l~~~g~-g~dv~   58 (365)
                      +.+.+++.+++.|. |+|..
T Consensus        16 ~l~e~~~~a~~~G~~gIEl~   35 (286)
T 3dx5_A           16 SFTDIVQFAYENGFEGIELW   35 (286)
T ss_dssp             CHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHHHHHHHCCCCEEEEC
T ss_conf             99999999998099999982


No 63 
>2o18_A Thiamine biosynthesis lipoprotein APBE; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.20A {Escherichia coli}
Probab=20.84  E-value=31  Score=12.95  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             CCCHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE----CCCEE--
Q ss_conf             767799999--99999999998445651665047778988---89788999999999861266089997----16200--
Q T0515           167 NKDFGLFDR--MLGEIEERFGALIARVDWVSLGGGIHFTG---DDYPVDAFSARLRAFSDRYGVQIYLE----PGEAS--  235 (365)
Q Consensus       167 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~idiGGG~~~~~---~~~~~~~~~~~i~~~~~~~~~~l~~E----pGR~l--  235 (365)
                      ..|+....|  +++.+.+.+++.+..--.||+||-+-...   .+.+|                ++-+|    +.+.+  
T Consensus       161 ~lDlggIaKGyavD~~~~~L~~~gv~~~lv~~GGdi~~~G~~~~g~pW----------------~IgI~~P~~~~~~~~~  224 (340)
T 2o18_A          161 YVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPW----------------RVAIQKPTDKENAVQA  224 (340)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESBCSSSSBC----------------CEEECCCCCC----CE
T ss_pred             EEEECCEEHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCCCCE----------------EEEEECCCCCCCCCEE
T ss_conf             674520136999999999998739970488615724765668889950----------------8998388886667569


Q ss_pred             --EECCEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCC
Q ss_conf             --105508999999740477469998265431024201024532337799943799970666876354304538
Q T0515           236 --ITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFA  307 (365)
Q Consensus       236 --va~ag~lit~V~~~k~~~~~~~i~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~l  307 (365)
                        .-.-+.+.|+     -+.+++...++-.++|+.+|--...     .......++|..+.|...|.|+.-.++
T Consensus       225 ~~~l~~~avaTS-----G~y~~~~~~~g~~~~HIidP~TG~p-----~~~~~~svTVia~~~~~ADalaTa~~v  288 (340)
T 2o18_A          225 VVDINGHGISTS-----GSYRNYYELDGKRLSHVIDPQTGRP-----IEHNLVSVTVIAPTALEADAWDTGLMV  288 (340)
T ss_dssp             EECCBTEEEEEE-----ECCCC-------CCCCCBCTTTSSB-----CCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEECCCCEEEEC-----CCCCCEEEECCEEECCCCCCCCCCC-----CCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf             997478389823-----5557548769917623117888974-----778947999998988899999999984


No 64 
>2prv_A Uncharacterized protein YOBK; NP_389780.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=20.14  E-value=32  Score=12.85  Aligned_cols=52  Identities=2%  Similarity=-0.114  Sum_probs=30.1

Q ss_pred             CCEEEEECCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHC
Q ss_conf             7789982788455132136788678808999778808999836879998734
Q T0515           313 GDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL  364 (365)
Q Consensus       313 GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~~dg~~~~ir~~~~~d~~~~~  364 (365)
                      ..++.|.+.|...+.+-..-.....+.+++.+.+....-....|+++|+.++
T Consensus        86 ~~~i~~~~~gg~~~~~d~~~~~~~e~~Vv~~d~~~~~~~~~A~SF~efL~~~  137 (153)
T 2prv_A           86 DGLVVIEDVDYFAYCLDTNKMKDGECPVVEWDRVIGYQDTVADSFIEFFYNK  137 (153)
T ss_dssp             TTEEEEEECSSEEEEEETTSCBTTBCCEEEEETTTEEEEEEESSHHHHHHHH
T ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHH
T ss_conf             7679998079957999833677886748999758985888313999999999


Done!