Query T0516 NP_765248.1, Staphylococcus epidermidis atcc 12228, 229 residues
Match_columns 229
No_of_seqs 115 out of 573
Neff 8.6
Searched_HMMs 22458
Date Fri May 21 18:04:18 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0516.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0516.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qcx_A Transcriptional activat 100.0 0 0 390.7 31.2 223 1-227 28-251 (263)
2 3ibx_A TENA, HP1287, putative 100.0 0 0 346.4 26.0 216 1-218 5-221 (221)
3 1udd_A Transcriptional regulat 100.0 0 0 338.7 26.0 215 1-222 3-219 (226)
4 1rtw_A Transcriptional activat 100.0 0 0 335.9 25.8 210 3-222 2-212 (220)
5 2gm8_A TENA homolog/THI-4 thia 100.0 0 0 328.2 26.4 210 2-218 10-220 (221)
6 2a2m_A Hypothetical protein BT 100.0 0 0 324.8 24.3 209 2-224 49-257 (258)
7 2qzc_A Transcriptional activat 100.0 0 0 324.5 21.5 205 1-219 5-210 (214)
8 2f2g_A SEED maturation protein 100.0 0 0 332.4 14.6 213 2-219 5-221 (221)
9 1z72_A Transcriptional regulat 100.0 1.3E-42 0 300.4 22.5 210 2-218 15-225 (225)
10 1wwm_A Hypothetical protein TT 100.0 3.1E-40 1.4E-44 284.6 19.0 185 3-215 4-189 (190)
11 1rcw_A CT610, CADD; iron, DI-i 100.0 2.3E-31 1E-35 225.8 18.7 214 1-222 6-225 (231)
12 3dde_A TENA/THI-4 protein, dom 100.0 1.9E-30 8.5E-35 219.6 21.5 223 1-227 2-229 (239)
13 3hlx_A Pyrroloquinoline-quinon 99.9 9.9E-23 4.4E-27 168.5 24.0 216 3-226 12-239 (258)
14 3bjd_A Putative 3-oxoacyl-(acy 99.5 9.2E-13 4.1E-17 102.3 16.5 205 6-218 109-325 (332)
15 3b5o_A CADD-like protein of un 99.5 1.7E-12 7.4E-17 100.6 16.5 201 4-215 8-225 (244)
16 1n45_A Heme oxygenase 1, HO-1; 98.7 4.7E-06 2.1E-10 57.8 18.7 202 1-216 11-218 (233)
17 1wzd_A Heme oxygenase; electro 98.7 4.6E-06 2.1E-10 57.9 17.7 186 2-206 7-202 (215)
18 1wov_A Heme oxygenase 2; HOMO 98.6 2.4E-05 1.1E-09 53.1 19.8 191 1-207 1-201 (250)
19 1we1_A Heme oxygenase 1; oxido 98.6 2E-06 9.1E-11 60.2 13.9 190 1-206 3-197 (240)
20 2q32_A Heme oxygenase 2, HO-2; 98.5 4.1E-05 1.8E-09 51.6 18.4 197 2-213 32-235 (264)
21 1j02_A Heme oxygenase 1; alpha 98.4 4.8E-05 2.1E-09 51.1 16.1 200 2-215 12-217 (267)
22 1j77_A HEMO, heme oxygenase; p 92.7 0.45 2E-05 24.8 18.0 181 1-218 9-194 (209)
23 1sk7_A Hypothetical protein PA 60.4 6.7 0.0003 17.0 16.8 170 1-205 12-186 (198)
24 1dvk_A PRP18; PRE-mRNA splicin 31.6 19 0.00084 14.0 3.3 15 120-134 108-122 (173)
25 2v0o_A FCHO2, FCH domain only 23.7 26 0.0012 13.1 2.0 57 1-62 5-62 (276)
26 1j5w_A Glycyl-tRNA synthetase 23.6 13 0.00058 15.1 0.0 38 1-39 13-53 (298)
No 1
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=100.00 E-value=0 Score=390.72 Aligned_cols=223 Identities=23% Similarity=0.368 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
|+||++|++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++++|+++++..+...+.++++
T Consensus 28 M~Fse~L~~~~~~~W~~~~~HPFv~~L~~GtL~~e~f~~YL~QDy~Yl~~~~r~la~~~aka~~~e~~~~~~~~~~~~~~ 107 (263)
T 2qcx_A 28 MKFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYE 107 (263)
T ss_dssp SSHHHHHHHHTHHHHHHHHTCHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 82999999877899999978999999765999999999999999999999999999998439998999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999998709998786101578668999999999985157879999999999999999999999842388976035
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVT 160 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y 160 (229)
+|+.+|+.+++.+|++.+++... +++|+|.+|++||++.+ ..++++++++||+||+|+|.+||+++.+. ..++++|
T Consensus 108 ~E~~l~~~~~~~~gi~~~~l~~~-~~~p~~~aY~~~l~~~a-~~g~~~e~laAllpc~~~Y~~ig~~l~~~--~~~~~~Y 183 (263)
T 2qcx_A 108 AEMALHREFAELLEISEEERKAF-KPSPTAYSFTSHMYRSV-LSGNFAEILAALLPCYWLYYEVGEKLLHC--DPGHPIY 183 (263)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHSC-CCCHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHTTC--CCCSHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHCC-CCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHH
T ss_conf 99999999999849998898347-76615558999999998-46998999999999999999999998753--7878568
Q ss_pred HHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 899871382-5899999999999998841898899999999999999999999998612579998777
Q T0516 161 SKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEKWEYGGNN 227 (229)
Q Consensus 161 ~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~w~~~~~~ 227 (229)
++||++|++ +|.+.|+.+.+++|+++++++++++++|+++|+++|+||++||||||++|+||.++..
T Consensus 184 ~eWI~~y~~~~f~~~v~~l~~~ld~~a~~~~~~~~~~l~~~F~~a~~lE~~FWd~Ay~~e~W~~~~~~ 251 (263)
T 2qcx_A 184 QKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSDSAIK 251 (263)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99998728878999999999999999876999999999999999999999999988427899983135
No 2
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrolase; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=100.00 E-value=0 Score=346.43 Aligned_cols=216 Identities=24% Similarity=0.355 Sum_probs=204.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
|+||++|+++++|+|+++++||||++|++||||++.|++||+|||+||.+|+|+++++++++|+.+++..+...+.+.++
T Consensus 5 m~~s~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~~a~~~a~~~~~~~~~~~~~~~~~~~~ 84 (221)
T 3ibx_A 5 MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLYLLEYAKVFALGVVKACDEAVMREFSNAIQDILN 84 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 27999999858999999988999999775999999999999999999999999999987517988999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999998709998786101578668999999999985157879999999999999999999999842388976035
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVT 160 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y 160 (229)
+|+.+|+.+++.+|++.+++... +++|+|.+|++|++..+. .++++.+++|++||+|+|.++|+.+.+.++..++++|
T Consensus 85 ~E~~~~~~~~~~~g~~~~~~~~~-~p~~~~~~y~~~~~~~a~-~~~~~~~l~al~~~~~~y~~~~~~l~~~~~~~~~~~~ 162 (221)
T 3ibx_A 85 NEMSIHNHYIRELQITQKELQNA-CPTLANKSYTSYMLAEGF-KGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFY 162 (221)
T ss_dssp CTTSHHHHHHHHTTCCHHHHHHC-CCCHHHHHHHHHHHHHHH-HSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHCC-CCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 87789999999949987777416-751778899999999984-5984889999999999999998999863377888558
Q ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89987138-25899999999999998841898899999999999999999999998612
Q T0516 161 SKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN 218 (229)
Q Consensus 161 ~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~ 218 (229)
++||++|+ ++|.++|..+.+++|+++..+++.+++++.++|+++|+||++||||||+.
T Consensus 163 ~~wi~~y~~~~~~~~v~~~~~~ld~~~~~~~~~~~~~~~~~f~~~~~lE~~Fwd~ay~~ 221 (221)
T 3ibx_A 163 GHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEYEYLFWDMAYQS 221 (221)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999867920699999999999999875999999999999999999999999987529
No 3
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii OT3} SCOP: a.132.1.3
Probab=100.00 E-value=0 Score=338.73 Aligned_cols=215 Identities=21% Similarity=0.317 Sum_probs=193.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
|.||++|+++++|+|+++++||||++|++||||+++|++||+||++||.+|+|+++++++++++++... +...+...+.
T Consensus 3 ~~fs~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~-~~~~~~~~~~ 81 (226)
T 1udd_A 3 VMITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKAEYPLMAE-LIELARDEVT 81 (226)
T ss_dssp CCHHHHHHHTTHHHHHHHHTCHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHH-HHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHH
T ss_conf 479999998779999999889899997759999999999999999999999999999987167199999-9999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999998709998786101578668999999999985157879999999999999999999999842388976035
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVT 160 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y 160 (229)
.|+++|+++++.+|++.+++.... ++|+|.+|++||++++ ..|++.++++||+||+|+|.+||+++.+..+.+++++|
T Consensus 82 ~e~~~~~~~~~~~g~~~~~~~~~~-~~~a~~~Y~~~l~~~a-~~g~~~~~l~al~pc~~~Y~~i~~~~~~~~~~~~~~~y 159 (226)
T 1udd_A 82 VEVENYVKLLKELDLTLEDAIKTE-PTLVNSAYMDFMLATA-YKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIY 159 (226)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHSC-CCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHTHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHCCC-CCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 999999989998599967753037-5435678999999987-16880899999999999999999999873056887608
Q ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Q ss_conf 89987138-258999999999999988418988999999999999999999999986125-799
Q T0516 161 SKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINE-KWE 222 (229)
Q Consensus 161 ~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e-~w~ 222 (229)
++||+.|+ ++|.+.|+.+.+++|++ ++.++++++++|+++|+||++||||||+.. -|+
T Consensus 160 ~~Wi~~y~~~~f~~~v~~l~~~~d~~----~~~~~~~~~~~F~~~~~lE~~Fwd~Ay~~~~~~~ 219 (226)
T 1udd_A 160 REWGKVYLSNEYLNLVGRLRKIIDSS----GHSGYDRLRRIFITGSKFELAFWEMAWRGGDVFL 219 (226)
T ss_dssp HHHHHGGGSHHHHHHHHHHHHHHHTS----CSSCHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99998737879999999999999867----9899999999999999999999999876898323
No 4
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein structure initiative; HET: MP5; 2.35A {Pyrococcus furiosus dsm 3638} SCOP: a.132.1.3
Probab=100.00 E-value=0 Score=335.92 Aligned_cols=210 Identities=19% Similarity=0.245 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77899998589999986085789985589998999999999999999999999999984599889999999999999999
Q T0516 3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGE 82 (229)
Q Consensus 3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e 82 (229)
||++|++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++++|+.+ +..+. .+...++.|
T Consensus 2 Fs~~L~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~Yl~QDy~yl~~~~r~~~~~~~~a~~~~-~~~~~-~~~~~~~~E 79 (220)
T 1rtw_A 2 FSEELIKENENIWRRFLPHKFLIEMAENTIKKENFEKWLVNDYYFVKNALRFMALLMAKAPDDL-LPFFA-ESIYYISKE 79 (220)
T ss_dssp HHHHHHHHSHHHHGGGTTCHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG-HHHHH-HHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHH-HHHHHHHHH
T ss_conf 2899988689999999889799998629999999999999999999999999999986699699-99999-998889999
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999999870999878610157866899999999998515787999999999999999999999984238897603589
Q T0516 83 VEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSK 162 (229)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~ 162 (229)
+.+|+++++.+|++.+ .+++|+|++|++||++.+ ..+++..+++||+||+|+|.++|+++.+.. .++++|++
T Consensus 80 l~~~~~~~~~~g~~~~-----~~~~p~~~aY~~~l~~~a-~~~~~~~~l~al~pce~~Y~~~~~~~~~~~--~~~~~y~~ 151 (220)
T 1rtw_A 80 LEMFEKKAQELGISLN-----GEIDWRAKSYVNYLLSVA-SLGSFLEGFTALYCEEKAYYEAWKWVRENL--KERSPYQE 151 (220)
T ss_dssp HHHHHHHHHHTTCCSS-----SCCCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHHHHHC--SSCCTTHH
T ss_pred HHHHHHHHHHCCCCCC-----CCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHH
T ss_conf 9999999998199633-----323565799999999987-459858899999999999999998765326--77886899
Q ss_pred HHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 987138-258999999999999988418988999999999999999999999986125799
Q T0516 163 WFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEKWE 222 (229)
Q Consensus 163 wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~w~ 222 (229)
||+.|+ ++|.+.|.++++++|++++++++.++++++++|+++|+||++||||||++|||-
T Consensus 152 wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~f~~~~~lE~~Fwd~ay~~e~~~ 212 (220)
T 1rtw_A 152 FINHWSSQEFGEYVKRIEKILNSLAEKHGEFEKERAREVFKEVSKFELIFWDIAYGGEGNV 212 (220)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9998378678999999999999999878999999999999999999999999998189752
No 5
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum str} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=100.00 E-value=0 Score=328.19 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG 81 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~ 81 (229)
.||++|++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++.+++++|+++.+..+...+.+.+++
T Consensus 10 g~~~~L~~~~~~~w~~~~~HPFv~~l~~GtL~~e~f~~yl~QDy~yl~~~~r~la~~~~ka~~~~~~~~~~~~~~~~~~~ 89 (221)
T 2gm8_A 10 GVTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTG 89 (221)
T ss_dssp SHHHHHHHHTHHHHHHHHTCHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 18999999749999999889899997759999999999999989999999999999987399879999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99999999987099987861015786689999999999851578799999999999999999999998423889760358
Q T0516 82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTS 161 (229)
Q Consensus 82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~ 161 (229)
|+++|+.+++.+|++.+++... +++|+|.+|++|+++++ ..+++.++++||+||+|+|.+||+++.+..+..++++|+
T Consensus 90 E~~~~~~~~~~~gi~~~~~~~~-~~~~~~~~y~~~l~~~a-~~~~~~~~l~al~pc~~~Y~~i~~~~~~~~~~~~~~~y~ 167 (221)
T 2gm8_A 90 EMANYEALLKEVGLSLRDAAEA-EPNRVNVSYMAYLKSTC-ALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYK 167 (221)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHS-CCCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCCCHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHC-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 9999999999819898898523-75241479999999987-059999999999788879999999998524678898509
Q ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9987138-25899999999999998841898899999999999999999999998612
Q T0516 162 KWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN 218 (229)
Q Consensus 162 ~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~ 218 (229)
+||+.|+ ++|.++|+.+.+++|+.. .+++++.++|+++|++|++||||||+.
T Consensus 168 ~wi~~~~~~~~~~~v~~l~~~ld~~~-----~~~~~~~~~f~~a~~lE~~Fwd~ay~~ 220 (221)
T 2gm8_A 168 KWASVYLSPEYRGLVERLRAVLDSSG-----LSAEELWPYFKEASLYELEFWQAAYEG 220 (221)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHTSS-----CCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99997188889999999999984584-----209999999999999999999997725
No 6
>2a2m_A Hypothetical protein BT3146; NP_812058.1, structural genomics, joint center for structural genomics, JCSG; 1.88A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=100.00 E-value=0 Score=324.80 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG 81 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~ 81 (229)
+|+.+||+.+.++|++++|||||++|++||||+++|++||+|||+||.+|+|+++.+++++|+.+.+.++... +.+
T Consensus 49 ~~~~~Lw~~~~~~~~~~~nh~Fv~~L~~GtL~~e~F~~YL~QDy~YL~~~~r~la~~~aka~~~~~~~~~~~~----l~~ 124 (258)
T 2a2m_A 49 SLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLMVQDGYYCFRGRDDYATAATCAQDETLREFFKAK----AKS 124 (258)
T ss_dssp SHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----HHH
T ss_conf 5999999975999999978889999872999999999999986999999999999998849998999999999----999
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99999999987099987861015786689999999999851578799999999999999999999998423889760358
Q T0516 82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTS 161 (229)
Q Consensus 82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~ 161 (229)
+.++|+.+++.+|+...+ ..+++|+|.+|++||++++. .+++.++++||+||+|+|.+||+++.+. ..++++|+
T Consensus 125 e~~~~~~~~~~~gi~~~~---~~~~~pat~aY~~~L~~~a~-~g~~~~~laAllpC~~~Y~~igk~l~~~--~~~~~~y~ 198 (258)
T 2a2m_A 125 YDEYNETYHQTWHLREAS---GLIPGTDIKDYADYEAYVAG-SLASPYMCVVMLPCEYLWPWIANFLDGY--TPTNSLYR 198 (258)
T ss_dssp HHHHHHHHHHTSCBCCGG---GBCCCHHHHHHHHHHHHHHH-HSCTHHHHHHHHHHHHHHHHHHHHHGGG--SCTTSTTH
T ss_pred HHHHHHHHHHHCCCCHHH---CCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHH
T ss_conf 999999999981998031---08977479999999999984-4999999999999999999999998755--78897189
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 998713825899999999999998841898899999999999999999999998612579998
Q T0516 162 KWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEKWEYG 224 (229)
Q Consensus 162 ~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~w~~~ 224 (229)
+||+.| ++|.+.+..+++++|+++... +++++.++|+++|+||++||||||..++|+-|
T Consensus 199 ~WI~~y-~~f~~~~~~l~~~ld~~~~~~---~~~~~~~iF~~~~~lE~~Fwd~A~~~~~~~~~ 257 (258)
T 2a2m_A 199 FWIEWN-GGTPNGAYQMGNMLEQYRDKI---DEDKAVEIFNTAMNYELKVFTSSTILTTIENG 257 (258)
T ss_dssp HHHHHH-CSCCHHHHHHHHHHHTTGGGS---CHHHHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHC-CCHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 998848-409999999999999863834---79999999999999999999989878768537
No 7
>2qzc_A Transcriptional activator TENA-1; NP_343586.1, putative TENA-like thiaminase II, structural genomics; 1.50A {Sulfolobus solfataricus P2}
Probab=100.00 E-value=0 Score=324.47 Aligned_cols=205 Identities=19% Similarity=0.330 Sum_probs=184.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
|+|++.|++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++++|+.+....+ ..+.+.+.
T Consensus 5 ~~~~e~L~~~~~~~W~~~~~HpFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~la~~~~k~~~~~~~~~l-~~~~~~~~ 83 (214)
T 2qzc_A 5 VGNVENLINGVGELWNKYVKHEFILKMRDGSLPLDIFRYYLIQDGKYVEDMLRALLIASSKGPIDKVTKIL-NLVFSSRD 83 (214)
T ss_dssp CHHHHHHHHHTTTHHHHHHTCHHHHHHHTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHH
T ss_conf 56999999972999999878989999771999999999999999999999999999998749979999999-99988999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999998709998786101578668999999999985157879999999999999999999999842388976035
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVT 160 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y 160 (229)
+|+++|+++++.+|++.+++... +++|+|.+|++||+.++ .+++.++++||+||+|+|.++|+++.+ .++++|
T Consensus 84 ~E~~~~~~~~~~~gi~~~~~~~~-~~~~~~~~y~~~l~~~a--~~~~~~~l~al~pc~~~Y~~~~~~~~~----~~~~~y 156 (214)
T 2qzc_A 84 KGLETHGKLYSKLDISRDVIVKT-GYNLINYAYTRHLYYYA--NLDWNKFLVAWTPCMFGYSIVGDYVID----SPNEVY 156 (214)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHS-CCCHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTT----CSCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHH-CCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCH
T ss_conf 99999999999859798898652-21248899999999987--488998999999999999999999874----655338
Q ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89987138-258999999999999988418988999999999999999999999986125
Q T0516 161 SKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINE 219 (229)
Q Consensus 161 ~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e 219 (229)
++||+.|+ ++|.+.|..+.+++|+++. ++++.++|+++|+||++||||||++|
T Consensus 157 ~~Wi~~y~~~ef~~~v~~l~~~~d~~~~------~e~~~~iF~~~~~lE~~Fwd~Ay~~~ 210 (214)
T 2qzc_A 157 KTWASFYASTEYKKRIEAILYALDEVSI------TEDLLNIFINSVRFEIGFWDASLRKD 210 (214)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8899971998999999999999821345------99999999999999999999887468
No 8
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, structural genomics; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*
Probab=100.00 E-value=0 Score=332.35 Aligned_cols=213 Identities=12% Similarity=0.113 Sum_probs=192.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Q ss_conf 57789999858999998608578998558999899999999999999999999999998459988999999999999---
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFM--- 78 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~--- 78 (229)
+|+++|++++.++|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++++++++++..+...+.+.
T Consensus 5 ~~~~~l~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~yl~QD~~yl~~~~r~~a~~~~~a~~~~~~~~~~~~l~~~~~~ 84 (221)
T 2f2g_A 5 GVIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRACKDSGESSDMEVVLGGIAS 84 (221)
T ss_dssp CHHHHHHHHTHHHHHHHTSCSCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 19999999779999999889899997729999999999999999999999999999988589979999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999987099987861015786689999999999851578799999999999999999999998423889760
Q T0516 79 LEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKES 158 (229)
Q Consensus 79 ~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~ 158 (229)
...|+.+|+++++.+|++.+. .++.|+|++|++|+..++...++++.++++++||+|+|.+||+++.+.+. ..++
T Consensus 85 ~~~e~~~~~~~~~~~g~~~~~----~~~~~~~~~y~~~l~~~~~~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~-~~~~ 159 (221)
T 2f2g_A 85 LNDEIEWFKREGSKWDVDFST----VVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGN-KTPV 159 (221)
T ss_dssp HHHHHHHHHHHHHHTTCCGGG----CCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHHH-TSSS
T ss_pred HHHHHHHHHHHHHHCCCCHHH----CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 999999999997656762420----68755589999999999870798898999999899999999999974467-5553
Q ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3589987138-258999999999999988418988999999999999999999999986125
Q T0516 159 VTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINE 219 (229)
Q Consensus 159 ~y~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e 219 (229)
+|++||++|+ ++|.++|.++.+++|+++..+++++++++.++|+++|++|++||||||++|
T Consensus 160 ~y~~wi~~y~~~~~~~~~~~~~~~~d~~~~~~s~e~~~~~~~~f~~~~~lE~~Fwd~Ay~~e 221 (221)
T 2f2g_A 160 ELTGACHRWGNDGFKQYCSSVKNIAERCLENASGEVLGEAEDVLVRVLELEVAFWEMSRGGQ 221 (221)
T ss_dssp CCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 49999997188679999999999999998769999999999999999999999999861699
No 9
>1z72_A Transcriptional regulator, putative; structural genomics, PSI, protein structure initiative; 1.45A {Streptococcus pneumoniae TIGR4} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=100.00 E-value=1.3e-42 Score=300.41 Aligned_cols=210 Identities=18% Similarity=0.302 Sum_probs=193.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG 81 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~ 81 (229)
+++.+|++.+.+.|+++++||||++|++||||++.|++||+|||+||.+|+|+++++++++|+.+.+..+...+....++
T Consensus 15 ~~~~~L~~~~~~~w~~~~~HPFv~~l~~GtL~~e~f~~yl~Qdy~yv~~~~r~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (225)
T 1z72_A 15 LTVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEAD 94 (225)
T ss_dssp HHHHHHHHTTHHHHHHHHTCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 69999999689999999889999997569999999999999999999999999999988598989999999999999976
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99999999987099987861015786689999999999851578799999999999999999999998423889760358
Q T0516 82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTS 161 (229)
Q Consensus 82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~ 161 (229)
|.++|+++++.+|++.+++... +++|+|.+|++|+...+ ..+++..++++++||+|+|..||+++.. ...+++|.
T Consensus 95 e~~~~~~~~~~~gi~~~~~~~~-~~~~~~~~y~~~l~~~a-~~~~~~~~l~al~~~~~~y~~~~~~~~~---~~~~~~~~ 169 (225)
T 1z72_A 95 EDGYFQKAFKELKVAENDYLEV-TLHPVTKAFQDLMYSAV-ASSDYAHLLVMLVIAEGLYLDWGSKDLA---LPEVYIHS 169 (225)
T ss_dssp HHHHHHHHHHHTTCCTHHHHSC-CCCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHTCSSC---CCSSHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHCC-CCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCH
T ss_conf 6789999999939598887314-65235667999999987-1498799999999999977989989988---63697420
Q ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9987138-25899999999999998841898899999999999999999999998612
Q T0516 162 KWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN 218 (229)
Q Consensus 162 ~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~ 218 (229)
+||+.|+ ++|.++++.+.+++|+++. ++++++++.++|+++|++|++||||||+.
T Consensus 170 ~wi~~~~~~~~~~~~~~~~~~ld~~~~--~~~~~~~~~~~f~~a~~lE~~F~d~ay~l 225 (225)
T 1z72_A 170 EWINLHRGPFFAEWVQFLVDELNRVGK--NREDLTELQQRWNQAVALELAFFDIGYDV 225 (225)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 377734876599999999999998729--99999999999999999999999986478
No 10
>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structural genomics; 2.61A {Thermus thermophilus HB8} SCOP: a.132.1.3
Probab=100.00 E-value=3.1e-40 Score=284.61 Aligned_cols=185 Identities=10% Similarity=0.095 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77899998589999986085789985589998999999999999999999999999984599889999999999999999
Q T0516 3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGE 82 (229)
Q Consensus 3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e 82 (229)
||.+||+++.|||++|.+||| |||.++|++||+|||+||.+|+|+++++++|+|+.+.+..+. .+.. +..|
T Consensus 4 ~~~~l~~~~~~i~~~i~~~Pf-------~L~~e~F~~YL~QD~~YL~~yar~~a~~~~ka~~~~~~~~~~-~~~~-~~~E 74 (190)
T 1wwm_A 4 LGLDLLKEVPGLLEEIKALPL-------RLDEERFRFWLQQDYPFVEALYRYQVGLLLEAPQAHRAPLVQ-ALMA-TVEE 74 (190)
T ss_dssp -------CCSSHHHHHHHCCC-------CCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHH-HHHH
T ss_conf 169999874689999984887-------899999999999899999999999999998299899999999-9989-9999
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999999870999878610157866899999999998515787999999999999999999999984238897603589
Q T0516 83 VEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSK 162 (229)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~ 162 (229)
+.+|+.++..+|+ +++|+|.+|++||.+.+ .++++++++|++||+|+|.+||+++. .+++||++
T Consensus 75 ~~~~~~~~~~~~~---------~~~p~~~aY~~~l~~~a--~~~~~e~laal~pc~~~Y~~ig~~~~-----~~~~py~e 138 (190)
T 1wwm_A 75 LDWLLLQGASPSA---------PVHPVRAGYIALLEEMG--RLPYAYRVVFFYFLNGLFLEAWAHHV-----PEEGPWAE 138 (190)
T ss_dssp HHHHHTTTCCSSS---------CCCHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHS-----CSSSHHHH
T ss_pred HHHHHHHHHHCCC---------CCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHH
T ss_conf 9999998876599---------99835899999999874--77839999999999999999999752-----24783899
Q ss_pred HHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987138-25899999999999998841898899999999999999999999998
Q T0516 163 WFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMA 215 (229)
Q Consensus 163 wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~A 215 (229)
||++|+ ++|.+.|..+.+++|++++.++++ ++.++|+++|++|+.||||+
T Consensus 139 WI~~Y~~~ef~~~v~~l~~~vd~~~~~~~~e---~~~~~f~~~~~lE~~FW~M~ 189 (190)
T 1wwm_A 139 LSQHWFAPEFQAVLYDLEVLARGLWEDLDPE---VVRTYLRRILEAEKATWSLL 189 (190)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf 9987199889999999999999986339999---99999999999999997504
No 11
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase, toxin; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=100.00 E-value=2.3e-31 Score=225.78 Aligned_cols=214 Identities=11% Similarity=0.097 Sum_probs=174.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q ss_conf 9577899998589999986085789985589998999999999999999999999999984599889999999999999-
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFML- 79 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~- 79 (229)
|+|.++|++...+ ..+.+|||+++|.+|+|+++.|++|++|||+|+.+|+|.++.+++++|+++.+..+...+.+..
T Consensus 6 ~~f~~~l~~~~~~--~~~~~HPf~~~l~~G~l~~e~~~~yl~Q~y~~~~~f~r~la~~~~~~~~~~~~~~l~~~l~~e~~ 83 (231)
T 1rcw_A 6 MNFLDQLDLIIQN--KHMLEHTFYVKWSKGELTKEQLQAYAKDYYLHIKAFPKYLSAIHSRCDDLEARKLLLDNLMDEEN 83 (231)
T ss_dssp -CHHHHHHHHHHH--TCGGGSHHHHHHHTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6899999999965--50216869999776999999999999999999999999999997709971678999999999862
Q ss_pred --HHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
Q ss_conf --99999999999870999878610157866899999999998515787999999999999999999999984238897-
Q T0516 80 --EGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNK- 156 (229)
Q Consensus 80 --~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~- 156 (229)
+++..++.++++.+|++.+++.... +.|+|.+|+++++..+ ..+++..++++++||+|+|..+++.+.+..+...
T Consensus 84 ~~~~h~~l~~~~~~~~g~~~~~i~~~~-~~p~~~~~~~~~~~~~-~~~~~~~~~a~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (231)
T 1rcw_A 84 GYPNHIDLWKQFVFALGVTPEELEAHE-PSEAAKAKVATFMRWC-TGDSLAAGVAALYSYESQIPRIAREKIRGLTEYFG 161 (231)
T ss_dssp SSSCHHHHHHHHHHHTTCCHHHHHHCC-CCHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHCC-CHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 335279999998887469999984024-2168899999999998-13259999999999999999999999987775279
Q ss_pred --CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf --603589987138258999999999999988418988999999999999999999999986125799
Q T0516 157 --ESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEKWE 222 (229)
Q Consensus 157 --~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~w~ 222 (229)
+...-.+++.|.....++.+.+.++++.+ ++++++++.++|.++|++|+.|||++|+...-+
T Consensus 162 ~~~~~~~~~f~~h~~~D~~H~~~~~~l~~~~----~~e~~~~~~~~~~~~~~~~~~f~d~~y~~~~~~ 225 (231)
T 1rcw_A 162 FSNPEDYAYFTEHEEADVRHAREEKALIEML----LKDDADKVLEASQEVTQSLYGFLDSFLDPGTCC 225 (231)
T ss_dssp CCSGGGGHHHHHHHHHHHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9856788998999999899999999999877----999999999999999999999999866767795
No 12
>3dde_A TENA/THI-4 protein, domain of unknown function with A heme oxygenase-like fold; YP_564736.1, structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=99.98 E-value=1.9e-30 Score=219.64 Aligned_cols=223 Identities=15% Similarity=0.145 Sum_probs=180.9
Q ss_pred CCH--HHHHHHHHHHHHHHHH-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHH
Q ss_conf 957--7899998589999986-0857899855899989999999999999999999999999845998899999-99999
Q T0516 1 MTF--SKELREASRPIIDDIY-NDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFL-VEQIE 76 (229)
Q Consensus 1 Msf--s~~L~~~~~~l~~~~~-~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l-~~~~~ 76 (229)
||+ -.+|++++.++|+..+ +|||+++|.+|||+++.|+.|++|||+|+.+|+|.++.+++++++.+..... .....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~hPf~~~l~~G~l~~~~~~~yl~q~y~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (239)
T 3dde_A 2 MSIIDLTKLEQKVATMWDSILTNSPFIHEVLDGKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYLSFCFHHA 81 (239)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHTTCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 54754999999999999999972979999865999999999999999999999999999998752311189999998762
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 99999999999999870999878610157866899999999998515787999999999999999999999984238-89
Q T0516 77 FMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPK-LN 155 (229)
Q Consensus 77 ~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~-~~ 155 (229)
....++..++.++++.+|++.+++.... +.|+|.+|+++++..+ ..+++..++++++||+|+|..+++.+..-.+ ..
T Consensus 82 ~~E~~h~~l~~~~l~~lGi~~~~l~~~~-p~p~t~~~~~~l~~~~-~~~~~~~~laa~~~~E~~~~~~~~~~~~~~~~~~ 159 (239)
T 3dde_A 82 HEEAGHELMALSDIASIGFDREDVLSSK-PLPATETLIAYLYWIS-ATGNPVQRLGYSYWAENVYGYIDPVLKAIQSTLD 159 (239)
T ss_dssp HHHTTTHHHHHHHHHHTTCCHHHHHTCC-CCHHHHHHHHHHHHHH-HSSCGGGGHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHHHCCCHHHHHHCC-CCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6640378999999999695999986179-9869999999999998-6699999999999999856889999999986269
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 760358998713825899999999999998841898899999999999999999999998612579998777
Q T0516 156 KESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEKWEYGGNN 227 (229)
Q Consensus 156 ~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~w~~~~~~ 227 (229)
.++....|+..|+..+.+++..+.+++++++. ++++++++.++|.+++++|++|||++|+++.+-.++-.
T Consensus 160 ~~~~~~~~~~~h~~~d~~H~~~~~~ll~~~~~--s~e~~~~v~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~ 229 (239)
T 3dde_A 160 LTPQSMKFFIAHSKIDAKHAEEVNEMLHEVCK--TQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGAS 229 (239)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88000132110086459999999999998849--99999999999999999999999999999887643551
No 13
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=99.92 E-value=9.9e-23 Score=168.46 Aligned_cols=216 Identities=12% Similarity=0.081 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---
Q ss_conf 77899998589999986085789985589998999999999999999999999999984599889999999999999---
Q T0516 3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFML--- 79 (229)
Q Consensus 3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~--- 79 (229)
|.++|.++.... -.+|||+++|.+|+|+++.++.|+.|+|+|+.+|+|.++.++++|||++..+.++..+....
T Consensus 12 F~~~L~~~~~~~---h~~HPF~~~~~~G~ls~~~l~~~~~q~y~yv~~fpr~laai~s~~~d~~~r~~l~~nl~eE~g~~ 88 (258)
T 3hlx_A 12 FEEALRAKGDFY---HIHHPYHIAMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSH 88 (258)
T ss_dssp HHHHHHHGGGGS---GGGSHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHH---CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999987763---47986999987799999999999998889999779999999981998899999999999986667
Q ss_pred --HHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CC
Q ss_conf --999999999998709998786101578668999999999985157879999999999999999999999842----38
Q T0516 80 --EGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMED----PK 153 (229)
Q Consensus 80 --~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~----~~ 153 (229)
+++.+++.++++.+|++.+++....++.|+|+.+++++...+ ..+++..+++++ ..++..+.+.+....- ..
T Consensus 89 ~~~~H~el~~~f~~alG~~~e~v~~~~~~lp~t~~~v~~~~~~~-~~~~~~~~~Aa~-~~E~~~p~i~~~~i~gl~~~y~ 166 (258)
T 3hlx_A 89 GEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFA-RRACWQEAACSS-LTELFAPQIHQSRLDSWPQHYP 166 (258)
T ss_dssp SSCHHHHHHHHHHHHTTCCHHHHHTCCSCCHHHHHHHHHHHHHH-HHSCHHHHHHGG-GGGGTHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88737999999999919998884013458839999999999975-136599999999-9999808999999998998638
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCC
Q ss_conf 89760358998713825899999999999998841898899999999999999999999998---61257999877
Q T0516 154 LNKESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMA---YINEKWEYGGN 226 (229)
Q Consensus 154 ~~~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~A---y~~e~w~~~~~ 226 (229)
..++.. -+|+..+......+++...+++++++. ++++++++.+++..+|++.|.|||+. |....||+-++
T Consensus 167 ~~~~~~-l~fF~~h~~~d~~h~e~~~~lv~~~a~--t~e~q~~~l~a~~~~~~~lw~flDgi~~aY~~~~~~~~~~ 239 (258)
T 3hlx_A 167 WIKEEG-YFFFRSRLSQANRDVEHGLALAKAYCD--SAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTV 239 (258)
T ss_dssp TSCGGG-GHHHHHHHHHHHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCTTTTT
T ss_pred CCCHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 788678-899999886226779999999999839--9999999999999999999999999999857899997767
No 14
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthase; structural genomics, APC5632, PSI-2, protein structure initiative; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=99.53 E-value=9.2e-13 Score=102.31 Aligned_cols=205 Identities=12% Similarity=0.086 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHH--HHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----
Q ss_conf 999985899999--86085789985589998999999999999999999999999984599889999999999999----
Q T0516 6 ELREASRPIIDD--IYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFML---- 79 (229)
Q Consensus 6 ~L~~~~~~l~~~--~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~---- 79 (229)
.+.+....+..+ -.+|||.+.+.+|+++++.++.|+.|.|+|...+.+..+.+++++++.+....+...+....
T Consensus 109 ~f~~~L~~~i~~~~~~~HPf~~~~~~G~~s~eqlr~~~~~r~~y~~~~~~~~aa~~~~~~d~~~r~~l~~~l~DE~G~g~ 188 (332)
T 3bjd_A 109 DFQKRLEQEIAAQSRERHPMSQYVFSGSASRAQLQVFLRHQWFRTFRLYRDAADLLVNLTDVDEAAALARYLYGELGEED 188 (332)
T ss_dssp HHHHHHHHHHHCC--CCCHHHHHHHHTCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHTCCSHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999874202578949999876999999999999999887516676099998269988999999999999718987
Q ss_pred --HHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCC
Q ss_conf --9999999999987099987861015786689999999999851578799999999999999999999----9984238
Q T0516 80 --EGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGK----RAMEDPK 153 (229)
Q Consensus 80 --~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~----~~~~~~~ 153 (229)
.++..++.++++.+|++.+.. .. ...|.|.++++.+... +...++..+++++...|+.-+.+.+ -+.+.+
T Consensus 189 ~~~~H~~l~~rl~ealGl~~d~~-~~-~~lp~t~a~vn~~~~~-~~~~~~~~avg~~~~tEl~~P~i~~~~i~gl~r~g- 264 (332)
T 3bjd_A 189 EKGSHPRLLAKLLEAIGLEADFQ-AV-STMPEEIAYLNNRARA-FRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAG- 264 (332)
T ss_dssp GGGCHHHHHHHHHHHTTCCCCTT-CC-CCCHHHHHHHHHHHHH-HHCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHCCCHHHH-HC-CCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-
T ss_conf 66638999999999929982332-11-4578999999999999-81544899999999999955377899999999849-
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89760358998713825899999999999998841898899999999999999999999998612
Q T0516 154 LNKESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN 218 (229)
Q Consensus 154 ~~~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~ 218 (229)
.++. -..+++.|-.....+++...++|.+.+. +++.++.+.+.-...|+..|.++|+-|+.
T Consensus 265 l~~~--~l~yF~~Hi~~d~~ha~~~~~lV~~~~~--t~e~q~~al~al~~~~~~l~~~lDal~~~ 325 (332)
T 3bjd_A 265 LSED--QAEYYKVHISLVPPRAKREWQLIARRIP--DVQFQNAFLTSLSQHFRVERAYYDAIWEE 325 (332)
T ss_dssp CCTT--TTHHHHHHHHHCC---CTTHHHHHTTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHHCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9978--9899999988277989999999986589--99999999999999999999999999999
No 15
>3b5o_A CADD-like protein of unknown function; ZP_00108531.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.35A {Nostoc punctiforme pcc 73102} PDB: 3b5p_A*
Probab=99.51 E-value=1.7e-12 Score=100.63 Aligned_cols=201 Identities=9% Similarity=-0.057 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHH--HHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH
Q ss_conf 78999985899999--8608578998558999899999999999999999999999998459---988999999999999
Q T0516 4 SKELREASRPIIDD--IYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMS---SMEDVKFLVEQIEFM 78 (229)
Q Consensus 4 s~~L~~~~~~l~~~--~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~---~~~~~~~l~~~~~~~ 78 (229)
|++|.+.....+.+ +.+|||++.+.+||+ +..+.|+.|.++|+.+|.+++..++..++ ++.....++.++...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~hP~~~~l~~~s~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~L~~Nl~eE 85 (244)
T 3b5o_A 8 TKQLNQLLAQDYVAFSITENPVVQMLSQASF--AQIAYVMQQYSIFPKELVGFTELARRKALGAGWNGVAQELQENIDEE 85 (244)
T ss_dssp HHHHHHHHHHHCGGGCTTTCTTGGGTTTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 5999999999999864004849999983679--99999999999999999999999998664468767999999999998
Q ss_pred H------HHHHHHHHHHHHHC-CCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHH---H
Q ss_conf 9------99999999999870-999878610157866899999999998515787999999999999999-99999---9
Q T0516 79 L------EGEVEAHEVLADFI-NEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVY-AVIGK---R 147 (229)
Q Consensus 79 ~------~~e~~~~~~~~~~~-g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y-~~i~~---~ 147 (229)
. ..+..+++++++.. |.+ ....++.|.|+.+++.+.+...+ +...+++|++.-++.- +.+.+ -
T Consensus 86 ~G~g~~~~~H~~L~~~~l~~~~~~~----~~~~~p~p~T~~~i~~~~~l~~~--~~~~~lgA~~a~E~~~i~~~~~l~~g 159 (244)
T 3b5o_A 86 MGSTTGGISHYTLLADGLEEGLGVA----VKNTMPSVATSKLLRTVLSLFDR--QVDYVLGATYAIEATSIPELTLIVKL 159 (244)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHCCC----CTTCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCC----HHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5789887668999999999727843----32068987999999999999847--80999999998663211899999999
Q ss_pred HHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9842388976035899871382-5899999999999998841898899999999999999999999998
Q T0516 148 AMEDPKLNKESVTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMA 215 (229)
Q Consensus 148 ~~~~~~~~~~~~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~A 215 (229)
+........++....+++.|.. ...++...+.+++..++ ++++..++.+.++.++.....||+.=
T Consensus 160 ~~~~~~~~~~~~~~~ff~~Hi~e~D~eHa~~~~~ll~~~~---~~e~~~~i~~g~~~~Ld~~~~fW~~L 225 (244)
T 3b5o_A 160 VEWLHEGAIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYI---QPEEFGEFAAGFRAMIDAMQVWWQEL 225 (244)
T ss_dssp HHHHCSSCCCHHHHHHHHHHHC-------CHHHHHHHTTC---CGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986357787534359998785551779999999999987---94789999999999999999999999
No 16
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* 1xk1_A* ...
Probab=98.72 E-value=4.7e-06 Score=57.81 Aligned_cols=202 Identities=12% Similarity=0.152 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
++||++|++...+.=+.+-++||++.+.+|+++++.+..||.|-|++....-+.+...... +...... . ...+.
T Consensus 11 ~~ls~~Lr~~T~~~H~~~E~~~~~~~l~~g~~s~~~Y~~~L~~~~~vy~~lE~~l~~~~~~-~~~~~~~-~----~~~l~ 84 (233)
T 1n45_A 11 QDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKES-PVFAPVY-F----PEELH 84 (233)
T ss_dssp CSHHHHHHHHTHHHHHHHHHSHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTTGGGC-C----HHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCC-C----HHHHC
T ss_conf 7799999999999999998676999987699899999999999999999899999873266-3011215-9----78750
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCC
Q ss_conf 999999999987099987861015786689999999999851578799999999999999999999----9984238897
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGK----RAMEDPKLNK 156 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~----~~~~~~~~~~ 156 (229)
....+..++...+|.++.+ ..++.|++..|++++...+. ++....++.++.-+.+=.--|+ .+.+..+..+
T Consensus 85 R~~~l~~Dl~~l~g~~~~~---~~~~~~a~~~yv~~i~~~~~--~~P~~lla~~YV~y~g~l~GGq~i~k~~~~~l~l~~ 159 (233)
T 1n45_A 85 RKAALEQDLAFWYGPRWQE---VIPYTPAMQRYVKRLHEVGR--TEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPS 159 (233)
T ss_dssp CHHHHHHHHHHHHCTTGGG---TSCCCHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred CHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1377898999874985202---47787679999999999875--099999999999998886088999999999708999
Q ss_pred C-CHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6-03589987138258-999999999999988418988999999999999999999999986
Q T0516 157 E-SVTSKWFQFYSTEM-DELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAY 216 (229)
Q Consensus 157 ~-~~y~~wi~~ys~ef-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay 216 (229)
+ .-+. +..+++.+. ..+-..+.+.+|.+. .++++++++++--..+-++=..-|+.--
T Consensus 160 ~~~~~~-f~~~~~~~d~~~~k~~~r~~ld~~~--l~~~~~~~ii~eA~~aF~~~~~lf~eL~ 218 (233)
T 1n45_A 160 SGEGLA-FFTFPNIASATKFKQLYRSRMNSLE--MTPAVRQRVIEEAKTAFLLNIQLFEELQ 218 (233)
T ss_dssp CSCSCG-GGCCTTCSCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCE-EECCCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887600-0027874679999999999987356--9999999999999999999999999999
No 17
>1wzd_A Heme oxygenase; electron-transfer, metal, artificial metalloprotein, oxidoreductase; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=98.68 E-value=4.6e-06 Score=57.87 Aligned_cols=186 Identities=11% Similarity=0.109 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHH
Q ss_conf 577899998589999986085789985589998999999999999999999999999984599-----889999999999
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSS-----MEDVKFLVEQIE 76 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~-----~~~~~~l~~~~~ 76 (229)
.|+.+|++...++=+++-+|||+..+.+|+++++.+..||.|-|++....-..+......... ++..+
T Consensus 7 ~l~~~Lr~~T~~~H~~~E~~~~~~~l~~g~~s~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~~~~R------- 79 (215)
T 1wzd_A 7 GLAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNR------- 79 (215)
T ss_dssp CHHHHHHHHTHHHHHHHHTCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTSCGGGCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHH-------
T ss_conf 8999999999999999982769999877999999999999999999999999999714472000224656665-------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHCC
Q ss_conf 999999999999998709998786101578668999999999985157879999999999999999999----9998423
Q T0516 77 FMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIG----KRAMEDP 152 (229)
Q Consensus 77 ~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~----~~~~~~~ 152 (229)
...+..++.. +|.+..... ..++.|++..|++++...+ ...+....++.++.-+.+-.--| +.+.+..
T Consensus 80 -----~~~l~~DL~~-l~~~~~~~~-~~~~~~~~~~y~~~~~~~~-~~~~p~~llg~~Yv~e~G~~~GGq~i~k~l~~~l 151 (215)
T 1wzd_A 80 -----AEVLARDLDK-LNGSSEWRS-RITASPAVIDYVNRLEEIR-DNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHY 151 (215)
T ss_dssp -----HHHHHHHHHH-HHSSSTHHH-HCCCCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH-HCCCCCCCC-CCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_conf -----5668999999-717732101-5777734999999999988-2389999999999998888720438999999841
Q ss_pred CCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 88976035899871382-5899999999999998841898899999999999999
Q T0516 153 KLNKESVTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTI 206 (229)
Q Consensus 153 ~~~~~~~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~ 206 (229)
..+++. ..+..+++. +-...-..+.+.+|.+. .++++++++++.-..+-+
T Consensus 152 ~l~~~~--~~fy~f~~~~d~~~~k~~~r~~l~~~~--~~~~~~~~ii~eA~~aF~ 202 (215)
T 1wzd_A 152 GVDPEA--LGFYHFEGIAKLKVYKDEYREKLNNLE--LSDEQREHLLKEATDAFV 202 (215)
T ss_dssp CCCGGG--CGGGCCTTCSCHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCC--CCCEECCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHH
T ss_conf 999877--610127886888999999999986467--999999999999999999
No 18
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A*
Probab=98.61 E-value=2.4e-05 Score=53.07 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=106.0
Q ss_pred CC-HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q ss_conf 95-77899998589999986085789985589998999999999999999999999999984-59988999999999999
Q T0516 1 MT-FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPK-MSSMEDVKFLVEQIEFM 78 (229)
Q Consensus 1 Ms-fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~-a~~~~~~~~l~~~~~~~ 78 (229)
|+ ||++|++...+.=+.+-++||++.+..|.++++.+..||.|-|+.- ..+-..+.+ ..++-...+.. ..
T Consensus 1 m~~ls~~Lre~T~~~H~~aE~~~f~~~ll~g~~~~~~Y~~~L~~~y~vY----~aLE~~l~~~~~~~~~~~~~~----~~ 72 (250)
T 1wov_A 1 MTNLAQKLRYGTQQSHTLAENTAYMKCFLKGIVEREPFRQLLANLYYLY----SALEAALRQHRDNEIISAIYF----PE 72 (250)
T ss_dssp -CCHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHHHHHHHHHHHHHH----HHHHHHHHHTTTSHHHHHHCC----GG
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCC----HH
T ss_conf 9438999999899999999766789998758989999999999999999----999999987579852000136----22
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHHHHHCCCC
Q ss_conf 9999999999998709998786101578668999999999985157879999999999999999----999999842388
Q T0516 79 LEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYA----VIGKRAMEDPKL 154 (229)
Q Consensus 79 ~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~----~i~~~~~~~~~~ 154 (229)
+.....+.+++...+|.++... ..+.|++..|++++...+. . +....++-++.-+.+=. .|++.+....+.
T Consensus 73 l~R~~~l~~DL~~l~g~~~~~~---~~~~~a~~~Yv~~i~~l~~-~-~P~~llah~Yv~ylGdlsGGQiI~r~l~~~l~l 147 (250)
T 1wov_A 73 LNRTDKLAEDLTYYYGPNWQQI---IQPTPCAKIYVDRLKTIAA-S-EPELLIAHCYTRYLGDLSGGQSLKNIIRSALQL 147 (250)
T ss_dssp GCCHHHHHHHHHHHHCTTHHHH---CCCCHHHHHHHHHHHHHHH-H-CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HCCHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHH-H-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 1030459988998727770204---7888679999999999986-3-979899999999988721115777777651158
Q ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9760358998713825----8999999999999988418988999999999999999
Q T0516 155 NKESVTSKWFQFYSTE----MDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIH 207 (229)
Q Consensus 155 ~~~~~y~~wi~~ys~e----f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~ 207 (229)
.++.... +.++++.+ -..+-..+.+.+|.+ ..++.+++++++--..+-++
T Consensus 148 ~~~~g~~-fy~F~~~~~~~d~~~fK~~~r~~l~~~--~l~~~~~~~iI~EA~~aF~l 201 (250)
T 1wov_A 148 PEGEGTA-MYEFDSLPTPGDRRQFKEIYRDVLNSL--PLDEATINRIVEEANYAFSL 201 (250)
T ss_dssp CTTSSCG-GGCCTTCCSHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-EEECCCCCCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 9877640-132477763657999999999998626--79999999999999999999
No 19
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1
Probab=98.60 E-value=2e-06 Score=60.22 Aligned_cols=190 Identities=13% Similarity=0.169 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
|+||++|++...+.=+.+-++||++.+..|.++++.++.||.|-|+.....-. ++.+..+......+. ...+.
T Consensus 3 ~~ls~~Lre~T~~~H~~aE~~~f~~~l~~g~ls~e~Y~~~L~~~y~vY~~LE~----~~~~~~~~~~~~~~~---~~~l~ 75 (240)
T 1we1_A 3 VNLASQLREGTKKSHSMAENVGFVKCFLKGVVEKNSYRKLVGNLYFVYSAMEE----EMAKFKDHPILSHIY---FPELN 75 (240)
T ss_dssp CCHHHHHHHHTHHHHHHHHTSHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH----HHHHTTTSTTGGGGC---CTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCHHHCC---HHHHH
T ss_conf 27999999999999999976589999875899999999999999999999999----998624672000100---05677
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCC
Q ss_conf 999999999987099987861015786689999999999851578799999999999999999999998----4238897
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAM----EDPKLNK 156 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~----~~~~~~~ 156 (229)
....+.+++....|-++.+ ...+.|++..|++++...+ .. +....++.++.-+.+=..-|+.+. +....++
T Consensus 76 R~~~i~~DL~~l~g~~~~~---~~~~~~a~~~yv~~i~~~~-~~-~P~~llah~Yv~ylgdlsGGq~i~~~~~~~l~l~~ 150 (240)
T 1we1_A 76 RKQSLEQDLQFYYGSNWRQ---EVKISAAGQAYVDRVRQVA-AT-APELLVAHSYTRYLGDLSGGQILKKIAQNAMNLHD 150 (240)
T ss_dssp CHHHHHHHHHHHHCTTHHH---HCCCCHHHHHHHHHHHHHH-HH-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHH-HC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999997799874876424---6899877999999887653-13-99999999999998872231888787887338999
Q ss_pred CCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 603589987138-25899999999999998841898899999999999999
Q T0516 157 ESVTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTI 206 (229)
Q Consensus 157 ~~~y~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~ 206 (229)
+.. .|.++.. ++-..+-..+.+.+|.+. .++.+++++++--..+-+
T Consensus 151 ~~~--~fy~f~~~~d~~~~k~~~r~~l~~~~--l~~~~~~~iI~EA~~aF~ 197 (240)
T 1we1_A 151 GGT--AFYEFADIDDEKAFKNTYRQAMNDLP--IDQATAERIVDEANDAFA 197 (240)
T ss_dssp SSC--GGGCCTTCSSHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHH
T ss_pred CCC--CEEECCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHH
T ss_conf 872--11336887879999999999986267--999999999999999999
No 20
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure initiative, PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A*
Probab=98.50 E-value=4.1e-05 Score=51.59 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
Q ss_conf 5778999985899999860857899855899989999999999999999999999999845-998899999999999999
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKM-SSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a-~~~~~~~~l~~~~~~~~~ 80 (229)
+||+.|++...+.=+.+-++||++.+..|+++++.++.||.|-|++-...=. .+.+. .++.....+. ...+.
T Consensus 32 ~ls~~Lre~T~~~H~~aE~~~f~~~l~~G~l~~~~Y~~~L~~~y~vY~~LE~----~l~~~~~~~~~~~~~~---~~~L~ 104 (264)
T 2q32_A 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEE----EMERNKDHPAFAPLYF---PMELH 104 (264)
T ss_dssp SHHHHHHHHSHHHHHHHHTCHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH----HHHHTTTCTTTGGGCC---HHHHC
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCCCC---CHHHH
T ss_conf 4999999999999999974699999877898999999999999999999999----9986457741000148---46556
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCC
Q ss_conf 9999999999870999878610157866899999999998515787999999999999999999999984----238897
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAME----DPKLNK 156 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~----~~~~~~ 156 (229)
.-..+.+++....|.++... .++.|++..|++++...+.. +....++-++.-+.+=..-|+.+.+ ..+..+
T Consensus 105 R~~~l~~DL~~l~g~~~~~~---~~~~~at~~yv~~i~~i~~~--~P~~llAh~YvrylGdlsGGQiI~k~l~~~l~l~~ 179 (264)
T 2q32_A 105 RKEALTKDMEYFFGENWEEQ---VQAPKAAQKYVERIHYIGQN--EPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPS 179 (264)
T ss_dssp CHHHHHHHHHHHHCTTGGGG---CCCCHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 55878999998537884346---78887899999999998731--99999999999999996436999999999729999
Q ss_pred CC-HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 60-3589987138-258999999999999988418988999999999999999999999
Q T0516 157 ES-VTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFN 213 (229)
Q Consensus 157 ~~-~y~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd 213 (229)
+. .+.+ .++.. ++-..+-..+.+.+|.+. .++.+++++++--..+-.+-..-|+
T Consensus 180 ~~~~~~F-y~f~~~~~~~~~K~~~r~~ld~l~--l~~~~~~~ii~EA~~aF~~n~~if~ 235 (264)
T 2q32_A 180 TGEGTQF-YLFENVDNAQQFKQLYRARMNALD--LNMKTKERIVEEANKAFEYNMQIFN 235 (264)
T ss_dssp TCTTCGG-GCCTTCSCHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEE-EECCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8885013-426776789999999999986057--9989999999999999999999999
No 21
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A*
Probab=98.37 E-value=4.8e-05 Score=51.12 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516 2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG 81 (229)
Q Consensus 2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~ 81 (229)
+||++|++...+.=+.+-+++|++.+.+|+++++.|..||.|-|++....=..+... ..++.....+. -..+..
T Consensus 12 ~ls~~LreaT~~~H~~aE~~~f~~~l~~g~~~~~~Y~~~L~~~y~vY~~LE~~~~~~---~~~~~~~~~~~---p~el~R 85 (267)
T 1j02_A 12 DLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERN---KQNPVYAPLYF---PEELHR 85 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHTSHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TTCTTTGGGCC---HHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCC---HHHHHH
T ss_conf 799999999999999997566999987699899999999999999999999999871---24751111138---676423
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCC-
Q ss_conf 99999999987099987861015786689999999999851578799999999999999999999----9984238897-
Q T0516 82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGK----RAMEDPKLNK- 156 (229)
Q Consensus 82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~----~~~~~~~~~~- 156 (229)
...+-+++...+|.++.+. .++.|++..|++++...+.. +....++-++.-..+=..-|+ .+.+......
T Consensus 86 ~~~l~~DL~~l~g~~~~~~---~~~~~a~~~yv~~i~~i~~~--~P~~llah~YvrylGdlsGGq~I~k~~~k~l~lp~~ 160 (267)
T 1j02_A 86 RAALEQDMAFWYGPHWQEA---IPYTPATQHYVKRLHEVGGT--HPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSS 160 (267)
T ss_dssp HHHHHHHHHHHHCTTGGGT---SCCCHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 2679989999817643246---78867789999999876430--999999999999989872689999999997199987
Q ss_pred CCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 603589987138-25899999999999998841898899999999999999999999998
Q T0516 157 ESVTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMA 215 (229)
Q Consensus 157 ~~~y~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~A 215 (229)
+.... +.++.+ ++-..+-..+.+.+|.+ ..++.+++++++--..+-++-..-|+.-
T Consensus 161 g~gl~-fy~f~~~~d~~~~K~~~r~~ld~l--~l~~~e~~~iI~EA~~aF~~n~~lf~eL 217 (267)
T 1j02_A 161 GEGLA-FFTFPSIDNPTKFKQLYRARMNTL--EMTPEVKHRVTEEAKTAFLLNIELFEEL 217 (267)
T ss_dssp CTTCG-GGCCTTCSCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76510-232478688999999999999706--7999999999999999999999999999
No 22
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Probab=92.68 E-value=0.45 Score=24.80 Aligned_cols=181 Identities=14% Similarity=0.080 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHH
Q ss_conf 9577899998589999986085789985589998999999999999999999999999--98459988999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAML--IPKMSSMEDVKFLVEQIEFM 78 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~--~~~a~~~~~~~~l~~~~~~~ 78 (229)
|+|+++|++...+.=+.+-+. ..+..|.++++.++.||.+-|.+....-..+... ..-.++......
T Consensus 9 ~~~~~rLR~~Tr~~H~~le~~---~~~~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~~R-------- 77 (209)
T 1j77_A 9 LTFAKRLKADTTAVHDSVDNL---VMSVQPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMAR-------- 77 (209)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH---HHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHSTTGGGGCC--------
T ss_pred CCHHHHHHHHHHHHHHHHHCC---HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC--------
T ss_conf 789999999999999999874---876256799999999999999999999999984655644455665126--------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCCCC
Q ss_conf 99999999999987099987861015786689999999999851578799999999999999---999999998423889
Q T0516 79 LEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYV---YAVIGKRAMEDPKLN 155 (229)
Q Consensus 79 ~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~---Y~~i~~~~~~~~~~~ 155 (229)
-..+.+++ ..+|.+........+ .+. ....++.+++.+.. =..|.+.+. .....
T Consensus 78 ---~~~L~~DL-~~lg~~~~~~~~~~~-~~~-----------------~a~~lG~~YV~eGs~lGGq~i~r~~~-~~~~~ 134 (209)
T 1j77_A 78 ---YDAVTQDL-KDLGEEPYKFDKELP-YEA-----------------GNKAIGWLYCAEGSNLGAAFLFKHAQ-KLDYN 134 (209)
T ss_dssp ---HHHHHHHH-HHTTCCCCCCSSCCC-CCC-----------------HHHHHHHHHHHHHHHHTTHHHHHHHH-TTTCB
T ss_pred ---HHHHHHHH-HHHCCCHHHCCCCCC-CCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC
T ss_conf ---69999789-984788254055777-798-----------------89999999999855889999999999-80589
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 760358998713825899999999999998841898899999999999999999999998612
Q T0516 156 KESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN 218 (229)
Q Consensus 156 ~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~ 218 (229)
++.. ..++..|+.......+.+.+.+|.+. +++.+++++++--+.+=.+=...++.....
T Consensus 135 ~~~~-~~f~~~~~~~~~~~w~~f~~~Ld~~~--~~~~~~~~ii~~A~~aF~~~~~~l~e~~~~ 194 (209)
T 1j77_A 135 GEHG-ARHLAPHPDGRGKHWRAFVEHLNALN--LTPEAEAEAIQGAREAFAFYKVVLRETFGL 194 (209)
T ss_dssp TTBB-CGGGSCCTTCHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCC-HHHHCCCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8400-25542556466899999999997489--999999999999999999999999986123
No 23
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidoreductase; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2
Probab=60.43 E-value=6.7 Score=17.00 Aligned_cols=170 Identities=11% Similarity=-0.016 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999--8459988999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLI--PKMSSMEDVKFLVEQIEFM 78 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~--~~a~~~~~~~~l~~~~~~~ 78 (229)
++||++|++...+.=+++-++++.. .+-.+++.++.||.+-|.+....-..+.... ...++........
T Consensus 12 ~~~s~rLr~~T~~~H~~le~~~~~~---~~~~~~~~Y~~~L~~~~~~y~~lE~~~~~~~~~~~~~~~~~~~R~~------ 82 (198)
T 1sk7_A 12 NLRSQRLNLLTNEPHQRLESLVKSK---EPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFPGLASRARDD------ 82 (198)
T ss_dssp CCHHHHHHHHTHHHHHHHHHHHHHH---CTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHSTTGGGGCCHH------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH------
T ss_conf 2699999999999999998042232---2138999999999999999999999998564465445407888679------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHCCCCC
Q ss_conf 9999999999998709998786101578668999999999985157879999999999999---9999999998423889
Q T0516 79 LEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPY---VYAVIGKRAMEDPKLN 155 (229)
Q Consensus 79 ~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~---~Y~~i~~~~~~~~~~~ 155 (229)
.+..+ +..+|.+......... | ...+....+++++..+. +=..|.+.+. .....
T Consensus 83 -----~L~~D-L~~L~~~~~~~~~~~~--~--------------~~~~~a~~lg~~YV~eGs~lGGq~i~r~l~-~~~~~ 139 (198)
T 1sk7_A 83 -----AARAD-LADLGHPVPEGDQSVR--E--------------ADLSLAEALGWLFVSEGSKLGAAFLFKKAA-ALELD 139 (198)
T ss_dssp -----HHHHH-HHHHTCCCCCCCCTTT--T--------------SCCCHHHHHHHHHHHHHTTTTHHHHHHHHG-GGTCB
T ss_pred -----HHHHH-HHHCCCCCCCCCCCCC--C--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
T ss_conf -----99999-9863799863467888--6--------------656889999999999998866899999999-81699
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 76035899871382589999999999999884189889999999999999
Q T0516 156 KESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQST 205 (229)
Q Consensus 156 ~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~ 205 (229)
++... .++..++.+-.+.-+.+.+.+|.. ..++++++++++--..+=
T Consensus 140 ~~~g~-~ff~~~~~~~~~~w~~f~~~L~~~--~~~~~~~~~~i~~A~~~F 186 (198)
T 1sk7_A 140 ENFGA-RHLAEPEGGRAQGWKSFVAILDGI--ELNEEEERLAAKGASDAF 186 (198)
T ss_dssp TTBBC-GGGSCCTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred CCCCC-HHHCCCCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
T ss_conf 96443-221678766489999999998758--999999999999999999
No 24
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=31.59 E-value=19 Score=14.02 Aligned_cols=15 Identities=0% Similarity=0.018 Sum_probs=6.7
Q ss_pred HHHCCCCHHHHHHHH
Q ss_conf 851578799999999
Q T0516 120 NAFARENAAFTIAAM 134 (229)
Q Consensus 120 ~a~~~~~~~~~laal 134 (229)
.+..+.+|+.|++.+
T Consensus 108 LaIGNa~WPIGVT~v 122 (173)
T 1dvk_A 108 LSIGNVAWPIGVTSV 122 (173)
T ss_dssp HHHTBCCCCSCC---
T ss_pred HHHCCCCCCCEEEEE
T ss_conf 872378876201242
No 25
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=23.70 E-value=26 Score=13.11 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=40.4
Q ss_pred CC-HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 95-778999985899999860857899855899989999999999999999999999999845
Q T0516 1 MT-FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKM 62 (229)
Q Consensus 1 Ms-fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a 62 (229)
|+ |++.||.....-.+ ...+.+.+|..--+.|..|+.+-.--=..|++-|.+++.+.
T Consensus 5 ~~~f~~~~w~~~~~g~~-----~l~~r~~~~~~~~~~l~~~~~eRa~iE~~Yak~L~kLa~~~ 62 (276)
T 2v0o_A 5 MAYFVENFWGEKNSGFD-----VLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSA 62 (276)
T ss_dssp CCHHHHHBCCTTCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42577707899984899-----99999999999999999999999999999999999999755
No 26
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=23.61 E-value=13 Score=15.10 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHH---HHCCHHHHHHHCCCCCHHHHHH
Q ss_conf 95778999985899999---8608578998558999899999
Q T0516 1 MTFSKELREASRPIIDD---IYNDGFIQDLLAGKLSNQAVRQ 39 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~---~~~HpFv~~l~~GtL~~e~f~~ 39 (229)
|+| ++++...+..|.. ++-.|.=.++..||..+..|.+
T Consensus 13 m~f-q~~i~~Lq~fW~~~GC~i~qpyd~e~GAgT~~P~Tflr 53 (298)
T 1j5w_A 13 MYL-QDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFG 53 (298)
T ss_dssp CCH-HHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTG
T ss_pred CCH-HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHH
T ss_conf 329-99999999999777968877765433646588899986
Done!