Query T0516 NP_765248.1, Staphylococcus epidermidis atcc 12228, 229 residues
Match_columns 229
No_of_seqs 115 out of 573
Neff 8.6
Searched_HMMs 11830
Date Fri May 21 18:06:23 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0516.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0516.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03070 TENA_THI-4: TENA/THI- 100.0 1.4E-45 0 317.1 24.9 208 8-217 1-209 (210)
2 PF01126 Heme_oxygenase: Heme 98.3 0.00011 9.5E-09 46.8 18.0 192 1-206 1-197 (205)
3 PF11251 DUF3050: Protein of u 94.3 0.13 1.1E-05 26.6 18.3 189 18-214 2-231 (232)
4 PF00611 FCH: Fes/CIP4 homolog 38.6 7.7 0.00065 14.8 5.8 82 1-91 1-89 (91)
5 PF02840 Prp18: Prp18 domain; 36.0 8.5 0.00071 14.5 2.9 15 120-134 85-99 (144)
6 PF05138 PaaA_PaaC: Phenylacet 24.4 13 0.0011 13.2 10.7 65 36-101 17-84 (263)
7 PF11563 Protoglobin: Protoglo 20.4 16 0.0013 12.7 3.4 160 31-220 20-194 (196)
8 PF11583 AurF: P-aminobenzoate 20.0 16 0.0014 12.6 13.8 119 80-206 126-248 (304)
9 PF08400 phage_tail_N: Prophag 17.2 19 0.0016 12.2 1.6 20 171-190 99-118 (134)
10 PF06167 MtfA: Phosphoenolpyru 14.1 19 0.0016 12.1 0.5 34 156-189 181-218 (253)
No 1
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase . The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 . The exact molecular function of this domain is uncertain.; PDB: 2gm7_B 2gm8_A 1udd_D 2qzc_A 2rd3_D 1to9_A 2qcx_B 1tyh_E 1yaf_A 1yak_C ....
Probab=100.00 E-value=1.4e-45 Score=317.10 Aligned_cols=208 Identities=30% Similarity=0.494 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99858999998608578998558999899999999999999999999999998459988999999999999999999999
Q T0516 8 REASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGEVEAHE 87 (229)
Q Consensus 8 ~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e~~~~~ 87 (229)
|++++|+|+++++||||++|++|||+.++|++|++|||+||.+|+|+++.+++++|+.+.++.+...+.+.+.+|+++|+
T Consensus 1 ~~~~~~~w~~~~~HPF~~~l~~G~L~~e~f~~yl~Qdy~yl~~~~r~~a~~~a~~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (210)
T PF03070_consen 1 HEKVDPIWQAITNHPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALAAAAARAPDPEDRRELLENLIEEIGGELELHE 80 (210)
T ss_dssp -HHTHHHHHHHHTSHHHHHHHTT-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96369999999789999996579999999999999529999999999999987197999999999999999888999999
Q ss_pred HHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 99987099987861015786689999999999851578799999999999999999999998423889760358998713
Q T0516 88 VLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFY 167 (229)
Q Consensus 88 ~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~wi~~y 167 (229)
.+++.+|++.+++... +++|+|++|++||++.+ ..+++.++++|++||+|+|.+||+++.+.+...++++|++||+.|
T Consensus 81 ~~~~~~Gi~~~~~~~~-~~~p~~~~y~~~l~~~~-~~~~~~~~l~Al~p~~~~y~~i~~~~~~~~~~~~~~~y~~wi~~y 158 (210)
T PF03070_consen 81 RFLEELGISREDLENI-EPSPATRAYIDYLLSLA-RTGSYAEGLAALLPCEWIYAEIAKRLAEELRAPEDNPYKEWIDMY 158 (210)
T ss_dssp HHHHHTT-HHHHHHHS-T--HHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHHHHHHCHHHSSCTSSHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHC-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9999839998887432-46668999999999976-359899999999999999999999987411346760179999985
Q ss_pred C-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8-2589999999999999884189889999999999999999999999861
Q T0516 168 S-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYI 217 (229)
Q Consensus 168 s-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~ 217 (229)
+ ++|...+..+.+++|+++..+++.+++++.++|+++|++|++|||+||+
T Consensus 159 ~~~~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 159 ASEEFEAAVEELEELLDELAADASDEERERLREIFLRSCELEYDFWDMAYR 209 (210)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 779999999999999999987689999999999999999999999998755
No 2
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide . Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae . A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem . There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation; PDB: 1we1_A 1wox_B 1wow_A 1wov_A 2qpp_A 2q32_B 2rgz_A 1j2c_A 1ivj_A 1irm_A ....
Probab=98.29 E-value=0.00011 Score=46.84 Aligned_cols=192 Identities=18% Similarity=0.135 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE 80 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~ 80 (229)
|+|+++|++...+.=+.+-+++|++.+.+|.++.+.+..+|.+-|.+....=..+....+... .... . ...+.
T Consensus 1 ~~l~~~Lr~~T~~~H~~~E~~~~~~~~~~~~~~~~~Y~~~L~~~y~~y~~lE~~l~~~~~~~~-~~~~--~----~~~l~ 73 (205)
T PF01126_consen 1 MALSERLREATRDLHEEAEALVFMKDLFAGRLSRDDYARLLRQFYFVYEALEEALDRHADDPL-LALF--Y----FPELR 73 (205)
T ss_dssp -SHHHHHHHHTHHHHHHHHTSHHHHHHH---SSHHHHHHHHHHHHHHHHHHHHHHHHTTTSTT-TGGG--S-----GHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHH--C----CCCHH
T ss_conf 908899999899999999840349998727876899999999999999999999986235741-0000--1----44466
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHH-HCCCCCC
Q ss_conf 999999999987099987861015786689999999999851578799999999999999999---999998-4238897
Q T0516 81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAV---IGKRAM-EDPKLNK 156 (229)
Q Consensus 81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~---i~~~~~-~~~~~~~ 156 (229)
.-..+-+++....|.++.+. .++.|++..|+..+...+.. +....++.++..+..=.- +-+++. +.....+
T Consensus 74 R~~~l~~DL~~l~g~~~~~~---~~~~~a~~~~~~~i~~~~~~--~p~~llg~~Yv~ygs~L~Gg~ii~~~~~~~~~l~~ 148 (205)
T PF01126_consen 74 RSPALEADLAYLYGPDWRDD---IEPSPATQAYVPRIREVAEE--SPALLLGHAYVRYGSDLGGGQIIRRIAARALGLPD 148 (205)
T ss_dssp THHHHHHHHHHHGGTTHHHH---CHHHHHHHHHHHHHHHHHHH--SGGGHHHHHHHHHHHHHT-HHHHHHHHHHHHT-BG
T ss_pred HHHHHHHHHHHHHCCCCHHC---CCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 68999999999857870211---47886689999999987036--99999999999999985379999999998618999
Q ss_pred CCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 603589987138-25899999999999998841898899999999999999
Q T0516 157 ESVTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTI 206 (229)
Q Consensus 157 ~~~y~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~ 206 (229)
...-..+...++ ++-..+-..+.+.+|++. .++++++++++--..+-.
T Consensus 149 ~~~~~~f~~~~~~~~~~~~~~~f~~~L~~~~--l~~~~~~~ii~eA~~aF~ 197 (205)
T PF01126_consen 149 GFGGLAFYGFGGIPDTGAFWRAFRAALDALE--LTEEERDEIIEEAKAAFR 197 (205)
T ss_dssp GB-GGGGGS-TT-SSHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHH
T ss_conf 8665200467772539999999999986689--999999999999999999
No 3
>PF11251 DUF3050: Protein of unknown function (DUF3050)
Probab=94.33 E-value=0.13 Score=26.58 Aligned_cols=189 Identities=8% Similarity=0.087 Sum_probs=117.5
Q ss_pred HHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHH------
Q ss_conf 86085789985589998999999999999999999999999984599---------889999999999999999------
Q T0516 18 IYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSS---------MEDVKFLVEQIEFMLEGE------ 82 (229)
Q Consensus 18 ~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~---------~~~~~~l~~~~~~~~~~e------ 82 (229)
..+||..+.+. +.+.++.|+.-.-+=|-+|...+..+=..... ....+.| |+.++-+|
T Consensus 2 L~~HplY~~i~----t~~dl~~FMe~HVfAVWDFMSLlK~LQ~~LTc~~~PW~P~~~p~~~rl---INEIVl~EEsD~~~ 74 (232)
T PF11251_consen 2 LINHPLYKKIN----TLEDLRIFMEHHVFAVWDFMSLLKALQQHLTCTSVPWVPPGDPEARRL---INEIVLGEESDEDP 74 (232)
T ss_pred CCCCCHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HHHHHHHHCCCCCC
T ss_conf 76684466518----899999999844776503988999999707478999889998458888---87777433034688
Q ss_pred -------HHHHHHHHHHCCCCHHH----------------HHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf -------99999999870999878----------------6101578668999999999985157879999999999999
Q T0516 83 -------VEAHEVLADFINEPYEE----------------IVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPY 139 (229)
Q Consensus 83 -------~~~~~~~~~~~g~~~~~----------------~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~ 139 (229)
-+++..-+++.|.+... .......++.+...+.+-...+....+-..+.+-.+.=|-
T Consensus 75 ~g~~~SHFElYl~AM~e~GAdt~~I~~fi~~~~~g~~v~~al~~~~~p~~~~~Fv~~Tf~~i~~~~~H~iAAaF~fGREd 154 (232)
T PF11251_consen 75 DGGYISHFELYLDAMREVGADTSPIDAFISLLRSGTSVFAALQQAGLPEPAKEFVRFTFELIESGPPHEIAAAFTFGRED 154 (232)
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHH
T ss_conf 99815399999999999189849999999998769989999870599879999999999998659718999999726165
Q ss_pred HHHHHHHHHHHCCC--CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999984238--8976035899871382-589999999999999884189889999999999999999999999
Q T0516 140 VYAVIGKRAMEDPK--LNKESVTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNM 214 (229)
Q Consensus 140 ~Y~~i~~~~~~~~~--~~~~~~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~ 214 (229)
+.+.....+.+..+ ..+-+.+...++-|.. +-+++.-...+++.+++.. ++...+++..+-.++.+....+||.
T Consensus 155 lIP~MF~~il~~~~~~~~~~~~f~yYL~RHIElDgdeHgPla~~m~~~Lcg~-D~~kw~e~~~~a~~Al~~Ri~LWd~ 231 (232)
T PF11251_consen 155 LIPDMFRSILDRLNIPEQQLPTFRYYLERHIELDGDEHGPLALQMLEELCGD-DPQKWQEAEQAAIEALEARIALWDG 231 (232)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5389999999986168552248888776551006764449999999999787-9999999999999999999987526
No 4
>PF00611 FCH: Fes/CIP4 homology domain; InterPro: IPR001060 This domain was first identified in cell division control protein 15 from fission yeast where after the onset of mitosis, it forms a ring-like structure which co-localizes with the medial actin ring. It may mediate cytoskeletal rearrangements required for cytokinesis. Also occurs in protein-tyrosine kinases, where it may play a role in regulatory processes such as cell cycle control, and in human Rho-GAP hematopoietic protein C1, where it has an inhibitory effect on stress fiber organisation.; PDB: 2v0o_C 2efl_A 2efk_A 3haj_A 3hah_A 3hai_A.
Probab=38.60 E-value=7.7 Score=14.75 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHH
Q ss_conf 95778999985899999860857899855899989999999999999999999999999845998-------89999999
Q T0516 1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSM-------EDVKFLVE 73 (229)
Q Consensus 1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~-------~~~~~l~~ 73 (229)
|+|...++.....+ ...+..|....+.+..|+.+-..-=..|++-|.++..+.... ..+.....
T Consensus 1 ~~F~~~~~~g~~~l---------~~~~~~~~~~~~~l~~~~~eRa~iE~eYak~L~kL~~~~~~~~~~~~~~~s~~~~~~ 71 (91)
T PF00611_consen 1 MSFWSELWDGFDVL---------FKRLKQGIKLLEELAQFFKERAEIEEEYAKKLQKLAKKFSKKKSNSSEPGSLKKAWD 71 (91)
T ss_dssp TCTT-TTTT-CHHH---------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SCHHHHHH
T ss_pred CCCCCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 98520000169999---------999999999999999999999999999999999999876012458876647999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998
Q T0516 74 QIEFMLEGEVEAHEVLAD 91 (229)
Q Consensus 74 ~~~~~~~~e~~~~~~~~~ 91 (229)
.+......+...|..+++
T Consensus 72 ~~~~~~~~~a~~h~~~a~ 89 (91)
T PF00611_consen 72 QLLEETEKIAQQHSKFAE 89 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999986
No 5
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known . This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles .; GO: 0008380 RNA splicing, 0005681 spliceosome; PDB: 1dvk_A.
Probab=35.99 E-value=8.5 Score=14.48 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=7.4
Q ss_pred HHHCCCCHHHHHHHH
Q ss_conf 851578799999999
Q T0516 120 NAFARENAAFTIAAM 134 (229)
Q Consensus 120 ~a~~~~~~~~~laal 134 (229)
.+..+..|+.|++.+
T Consensus 85 LaIGNa~WPIGVT~v 99 (144)
T PF02840_consen 85 LAIGNAAWPIGVTMV 99 (144)
T ss_dssp HH-------------
T ss_pred HHCCCCCCCCCEEEE
T ss_conf 842578877411464
No 6
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid . These proteins may form part of a dioxygenase complex.; PDB: 1otk_A.
Probab=24.37 E-value=13 Score=13.19 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHH
Q ss_conf 9999999999999999999999998459988999999999999999999999999870---99987861
Q T0516 36 AVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGEVEAHEVLADFI---NEPYEEIV 101 (229)
Q Consensus 36 ~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~---g~~~~~~~ 101 (229)
.+..|+.+-.-=-.-.+.-++-.+.++|..++..-+...++..+. +-.++-.++.++ |.+.+++.
T Consensus 17 ~L~~~l~~laD~elila~r~~ew~~~AP~LeediAl~nialDelG-hAr~ly~~a~el~G~G~~~d~la 84 (263)
T PF05138_consen 17 ALIRYLLRLADDELILAQRLSEWCGHAPSLEEDIALANIALDELG-HARLLYRLAEELEGDGRDEDDLA 84 (263)
T ss_dssp HHHHHHHH---HHHHHHHH--------SSHHHHHHHHH---------HHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999998043988614776898609988999999999999999-99999999999715799778899
No 7
>PF11563 Protoglobin: Protoglobin; PDB: 2vee_A 2veb_A.
Probab=20.35 E-value=16 Score=12.67 Aligned_cols=160 Identities=13% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
Q ss_conf 999899999999999999999999999998459-9889999999999999999999999998709998786101578668
Q T0516 31 KLSNQAVRQYLRADASYLKEFTNIYAMLIPKMS-SMEDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVKEKVWPPS 109 (229)
Q Consensus 31 tL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~-~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~ 109 (229)
-++.+.|. .+.++..|-..-.+++..+..-.. ..+++ ++.-.+.+.+ |-.++..++-.. ..|++.
T Consensus 20 pit~~d~e-~lK~~~~Ftd~D~~~Lr~a~evl~~~vedI---lD~wYGfv~s----~P~L~~yf~dpd------G~p~~e 85 (196)
T PF11563_consen 20 PITLEDFE-LLKKAVMFTDEDERALRMAGEVLEPQVEDI---LDVWYGFVAS----HPHLAAYFGDPD------GNPNPE 85 (196)
T ss_dssp SS-HHHHH-HHHHHTT--HHHHHHHHH---TTGGGHHHH---HHHH-----------HHHHGGGB-----------B-HH
T ss_pred CCCHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCC----CHHHHHHHCCCC------CCCCHH
T ss_conf 98899999-999884478678999999888888889999---9999998706----889998843988------896889
Q ss_pred H-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-H-HHHHHHHHHCCCCC-------CCCHHHHHHHHCCCHHHHHH
Q ss_conf 9-----999999999851578799999999999999-9-99999998423889-------76035899871382589999
Q T0516 110 G-----DHYIKHMYFNAFARENAAFTIAAMAPCPYV-Y-AVIGKRAMEDPKLN-------KESVTSKWFQFYSTEMDELV 175 (229)
Q Consensus 110 ~-----~~Y~~~l~~~a~~~~~~~~~laal~pc~~~-Y-~~i~~~~~~~~~~~-------~~~~y~~wi~~ys~ef~~~~ 175 (229)
. ...-.+.+.+....-+. +|+ | .+||.+..+..+.. +.-+++--|.+-.| -+
T Consensus 86 yL~rvR~rf~qWILD~c~~~YD~----------ewlnyq~eIGlrH~r~kkn~td~v~a~~~i~~Ry~iafi~p----i~ 151 (196)
T PF11563_consen 86 YLQRVRKRFGQWILDTCRRPYDQ----------EWLNYQYEIGLRHVRIKKNQTDGVNAVPNIPLRYMIAFIYP----IT 151 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SSH----------HHHHHHHH----SSTTTTTTTTT----S----HHHHHTHHH----HH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH----HH
T ss_conf 99999999999999981471129----------99999999887874145676556566652119999999986----99
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999884189889999999999999999999999861257
Q T0516 176 DVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEK 220 (229)
Q Consensus 176 ~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~ 220 (229)
..+..++.+- .-++++.++|.++..++..+...-|.-.|.+++
T Consensus 152 ~t~~~fL~~~--g~~~e~ve~m~qAW~k~v~l~v~lw~~pY~~~~ 194 (196)
T PF11563_consen 152 ATIRPFLAKK--GHSPEEVEKMHQAWFKAVVLQVTLWSYPYAKEG 194 (196)
T ss_dssp HTTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGGB---
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999864--899899999999999999999987426202026
No 8
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3chi_B 3chh_A 2jcd_B 3chu_A 3cht_B.
Probab=20.01 E-value=16 Score=12.62 Aligned_cols=119 Identities=7% Similarity=-0.037 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHCC----CCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998709----9987861015786689999999999851578799999999999999999999998423889
Q T0516 80 EGEVEAHEVLADFIN----EPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLN 155 (229)
Q Consensus 80 ~~e~~~~~~~~~~~g----~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~ 155 (229)
..+...|.++++..| +.. .+..+........+........-....+++.+..|.+-...-+.+.++..
T Consensus 126 ~rH~~mf~~~~~r~~~~~g~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~E~~i~~~~~~~~~d~~-- 197 (304)
T PF11583_consen 126 ARHALMFARFINRTGALRGLED------LPPMYPPRRLLRALARLAPAWQRPLVFFAFALVGEEIIDAYQRQIARDER-- 197 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTT----------S--HHHHHHHHHHHTS-SHHHHHHHHHH---HHHHSBHHHHHHHHT-SS--
T ss_pred HHHHHHHHHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_conf 9999999999999854137665------78878825889989875332121199999999999999999998743788--
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 760358998713825899999999999998841898899999999999999
Q T0516 156 KESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTI 206 (229)
Q Consensus 156 ~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~ 206 (229)
-.+.-+.-...|--|=..|+..+..++.++....++.++.....+...++.
T Consensus 198 i~P~vr~v~~iH~~DEaRH~~f~~~~l~~~~~~l~~~~r~~~~~~l~~~~~ 248 (304)
T PF11583_consen 198 IQPLVRQVMRIHVRDEARHIAFAREVLRRRYPRLSPAERAILAEILPEALR 248 (304)
T ss_dssp S-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 795999999999999998999999999999986999999999999999999
No 9
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This domain is found at the N terminus of prophage tail fibre proteins.
Probab=17.17 E-value=19 Score=12.21 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999884189
Q T0516 171 MDELVDVFDQLMDRLTKHCS 190 (229)
Q Consensus 171 f~~~~~~~~~~~d~~~~~~~ 190 (229)
-.+....|++++++....+.
T Consensus 99 ~Pe~l~~Fe~~~~~va~~a~ 118 (134)
T PF08400_consen 99 RPEALKRFEQMVAQVAQDAE 118 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999998899
No 10
>PF06167 MtfA: Phosphoenolpyruvate:glucose-phosphotransferase regulator; InterPro: IPR010384 This is a family of uncharacterised bacterial sequences.; PDB: 3dl1_A.
Probab=14.10 E-value=19 Score=12.10 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHCC
Q ss_conf 76035899871382589999999----99999988418
Q T0516 156 KESVTSKWFQFYSTEMDELVDVF----DQLMDRLTKHC 189 (229)
Q Consensus 156 ~~~~y~~wi~~ys~ef~~~~~~~----~~~~d~~~~~~ 189 (229)
++..|+.|.+..+.+|....... ...+|.|+.+.
T Consensus 181 ~~~~~~~W~~~~~~~~~~l~~~~~~~~~~~id~Yaatn 218 (253)
T PF06167_consen 181 PGMDYRPWAKVFQREYERLQQQVDRGEKSFIDPYAATN 218 (253)
T ss_dssp -GGG----HHHHHHHHHHHHHHHHH---SSS-TTTTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 71149999999999999999999717898778303598
Done!