Query         T0516 NP_765248.1, Staphylococcus epidermidis atcc 12228, 229 residues
Match_columns 229
No_of_seqs    115 out of 573
Neff          8.6 
Searched_HMMs 15564
Date          Fri May 21 18:04:40 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0516.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0516.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1to9a_ a.132.1.3 (A:) Transcr 100.0       0       0  362.6  28.3  221    2-226     1-222 (225)
  2 d1udda_ a.132.1.3 (A:) Hypothe 100.0       0       0  332.6  25.8  211    1-218     3-214 (215)
  3 d2gm8a1 a.132.1.3 (A:2-212) Te 100.0       0       0  327.7  26.3  209    3-218     1-210 (211)
  4 d1rtwa_ a.132.1.3 (A:) Putativ 100.0       0       0  323.1  26.3  204    3-216     2-206 (206)
  5 d2a2ma1 a.132.1.3 (A:10-240) H 100.0       0       0  322.0  24.2  203    2-218    28-230 (231)
  6 d2f2ga1 a.132.1.3 (A:5-219) Se 100.0       0       0  327.1  14.5  210    3-217     2-215 (215)
  7 d1z72a1 a.132.1.3 (A:4-220) Pu 100.0 2.8E-45       0  316.5  22.5  207    3-216    10-217 (217)
  8 d1wwma1 a.132.1.3 (A:11-190) H 100.0 3.7E-36 2.4E-40  256.5  19.0  177   11-215     2-179 (180)
  9 d1rcwa_ a.132.1.4 (A:) Hypothe 100.0 3.6E-28 2.3E-32  203.5  20.7  206    2-215     1-212 (213)
 10 d1otva_ a.132.1.4 (A:) Coenzym  99.9 1.3E-27 8.2E-32  199.8  12.2  215    3-229    11-241 (254)
 11 d1wzda1 a.132.1.1 (A:7-213) He  98.7 7.9E-07 5.1E-11   61.9  15.9  196    3-212     2-202 (207)
 12 d1n45a_ a.132.1.1 (A:) Heme ox  98.7 3.9E-06 2.5E-10   57.3  18.7  198    2-213     3-206 (214)
 13 d1wzda1 a.132.1.1 (A:7-213) He  98.6 2.1E-06 1.4E-10   59.1  15.9  191    3-212     2-202 (207)
 14 d1we1a_ a.132.1.1 (A:) Heme ox  98.6 3.5E-06 2.2E-10   57.7  15.6  196    1-212     2-202 (222)
 15 d1wova1 a.132.1.1 (A:2-250) He  98.5 5.3E-06 3.4E-10   56.4  14.7  191    2-207     2-200 (249)
 16 d1j77a_ a.132.1.2 (A:) Heme ox  96.2   0.044 2.9E-06   30.4  17.8  181    1-218     2-187 (200)
 17 d1sk7a_ a.132.1.2 (A:) Heme ox  53.0     6.1 0.00039   16.2  16.8  170    3-207     3-177 (187)
 18 d1dvka_ a.72.1.1 (A:) Function  35.2      11 0.00073   14.4   3.3   15  120-134   108-122 (169)
 19 d1j5wa_ d.104.1.1 (A:) Glycyl-  26.2     7.5 0.00048   15.6   0.0   38    1-39      1-41  (281)
 20 d2gmha2 d.16.1.8 (A:237-335) E  23.4      18  0.0012   13.1   1.7   21   11-31     67-87  (99)
 21 d2efla1 a.238.1.4 (A:1-288) Fo  21.0      20  0.0013   12.8   7.4   53    1-62      1-53  (288)

No 1  
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}
Probab=100.00  E-value=0  Score=362.56  Aligned_cols=221  Identities=24%  Similarity=0.377  Sum_probs=207.7

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516             2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG   81 (229)
Q Consensus         2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~   81 (229)
                      .||++|++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++++|+++++..+...+.+.+++
T Consensus         1 kFs~~L~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~yl~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~   80 (225)
T d1to9a_           1 KFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEA   80 (225)
T ss_dssp             CHHHHHHHHTHHHHHHHHTCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             96899998768999999889999997659999999999999999999999999999985499768999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             99999999987099987861015786689999999999851578799999999999999999999998423889760358
Q T0516            82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTS  161 (229)
Q Consensus        82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~  161 (229)
                      |+++|+++++.+|++.+++.... ++|+|++|++||++++ ..+++.++++||+||+|+|.++|+++...  ...+++|+
T Consensus        81 e~~~~~~~~~~~gi~~~~~~~~~-~~p~~~~y~~~l~~~a-~~~~~~~~l~Al~~ce~~Y~~~~~~~~~~--~~~~~~y~  156 (225)
T d1to9a_          81 EMALHREFAELLEISEEERKAFK-PSPTAYSYTSHMYRSV-LSGNFAEILAALLPCYWLYYEVGEKLLHC--DPGHPIYQ  156 (225)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHTCC-CCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHTTTC--CCSSHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHCC-CCCCCCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHH
T ss_conf             99999999999299988885057-6631216899999988-45988999999999999999999998752--66774079


Q ss_pred             HHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             9987138-2589999999999999884189889999999999999999999999861257999877
Q T0516           162 KWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYINEKWEYGGN  226 (229)
Q Consensus       162 ~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~e~w~~~~~  226 (229)
                      +||+.|+ ++|.+.++.+.+++|++++++++++++++.++|.++|++|++||||||++|+||.+|.
T Consensus       157 ~wi~~~~~~~f~~~~~~~~~~ld~~~~~~~~~~~~~~~~~f~~~~~lE~~Fwd~ay~~~~w~~~~~  222 (225)
T d1to9a_         157 KWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSDSAI  222 (225)
T ss_dssp             HHHHHHHSTTTTTHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             999701681168999999999999987689999999999999999999999998840689998345


No 2  
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=0  Score=332.60  Aligned_cols=211  Identities=22%  Similarity=0.326  Sum_probs=190.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516             1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE   80 (229)
Q Consensus         1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~   80 (229)
                      |+||++|+++++|+|+++++||||++|++||||++.|++||+|||+||.+|+|+++++++++++++... +...+...+.
T Consensus         3 ~~fs~~L~~~~~~~w~~~~~HPFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~~a~~~~ka~~~~~~~-~~~~~~~~~~   81 (215)
T d1udda_           3 VMITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKAEYPLMAE-LIELARDEVT   81 (215)
T ss_dssp             CCHHHHHHHTTHHHHHHHHTCHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHH-HHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHH
T ss_conf             179999998779999998889899997759999999999999989999999999999987256099999-9999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             99999999998709998786101578668999999999985157879999999999999999999999842388976035
Q T0516            81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVT  160 (229)
Q Consensus        81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y  160 (229)
                      .|+++|.++++.+|++.+++.... ++|+|.+|++||++++ ..|+++++++||+||+|+|.+||+++.+.++..++++|
T Consensus        82 ~e~~~~~~~~~~~gi~~~~~~~~~-~~~~~~~y~~~l~~~a-~~~~~~~~l~al~~c~~~Y~~~~~~~~~~~~~~~~~~y  159 (215)
T d1udda_          82 VEVENYVKLLKELDLTLEDAIKTE-PTLVNSAYMDFMLATA-YKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIY  159 (215)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHSC-CCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHTHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHCCCC-CCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             999999999999099987844247-5325679999999987-17988779999999999999999999874366887426


Q ss_pred             HHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89987138-25899999999999998841898899999999999999999999998612
Q T0516           161 SKWFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN  218 (229)
Q Consensus       161 ~~wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~  218 (229)
                      ++||+.|+ ++|.++|+.+.+++|++    ++.++++++++|.++|++|++||||||+.
T Consensus       160 ~~Wi~~y~~~~f~~~v~~l~~~~d~~----~~~~~~~~~~iF~~~~~lE~~Fwd~ay~~  214 (215)
T d1udda_         160 REWGKVYLSNEYLNLVGRLRKIIDSS----GHSGYDRLRRIFITGSKFELAFWEMAWRG  214 (215)
T ss_dssp             HHHHHGGGSHHHHHHHHHHHHHHHTS----CSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99998747879999999999999867----98899999999999999999999998728


No 3  
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=100.00  E-value=0  Score=327.71  Aligned_cols=209  Identities=23%  Similarity=0.325  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             77899998589999986085789985589998999999999999999999999999984599889999999999999999
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGE   82 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e   82 (229)
                      .|++|+++++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++++|+.+.+..+...+.+.+++|
T Consensus         1 ~t~~L~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~yl~QD~~yl~~~~r~la~~~~~~~~~~~~~~~~~~~~~~~~~E   80 (211)
T d2gm8a1           1 VTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGE   80 (211)
T ss_dssp             HHHHHHHHTHHHHHHHHTCHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             94999986699999988898999977499999999999999999999999999999874997699999999999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999999870999878610157866899999999998515787999999999999999999999984238897603589
Q T0516            83 VEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSK  162 (229)
Q Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~  162 (229)
                      +.+|+.+++.+|++.+++... +++|+|.+|++|++.++ ..+++.++++||+||+|+|.+||+++.+.++..++++|++
T Consensus        81 ~~~~~~~~~~~gi~~~~~~~~-~~~~~~~~y~~~l~~~a-~~~~~~~~l~al~~c~~~Y~~~~~~~~~~~~~~~~~~y~~  158 (211)
T d2gm8a1          81 MANYEALLKEVGLSLRDAAEA-EPNRVNVSYMAYLKSTC-ALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKK  158 (211)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHS-CCCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHC-CCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             999999999949698888535-87234546899999988-3698898999999999999999999986534458872899


Q ss_pred             HHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             987138-25899999999999998841898899999999999999999999998612
Q T0516           163 WFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN  218 (229)
Q Consensus       163 wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~  218 (229)
                      ||+.|+ ++|.+.|.++.+++|+..     ++++++.++|+++|++|++||||||+-
T Consensus       159 wi~~~~~~~f~~~v~~l~~~ld~~~-----~~~~~~~~~f~~~~~lE~~Fwd~ay~~  210 (211)
T d2gm8a1         159 WASVYLSPEYRGLVERLRAVLDSSG-----LSAEELWPYFKEASLYELEFWQAAYEG  210 (211)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHTSS-----CCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9997088889999999999985582-----109999999999999999999997725


No 4  
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00  E-value=0  Score=323.08  Aligned_cols=204  Identities=19%  Similarity=0.254  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             77899998589999986085789985589998999999999999999999999999984599889999999999999999
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGE   82 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e   82 (229)
                      ||++|++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++.+++++|+.+. ..+. .+...++.|
T Consensus         2 Fs~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~yl~QDy~yl~~~~r~~a~~~~~~~~~~~-~~~~-~~~~~~~~E   79 (206)
T d1rtwa_           2 FSEELIKENENIWRRFLPHKFLIEMAENTIKKENFEKWLVNDYYFVKNALRFMALLMAKAPDDLL-PFFA-ESIYYISKE   79 (206)
T ss_dssp             HHHHHHHHSHHHHGGGTTCHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGH-HHHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHH-HHHHHHHHH
T ss_conf             08999886799999998896999976599999999999999999999988999999862996899-9999-998888899


Q ss_pred             HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999999870999878610157866899999999998515787999999999999999999999984238897603589
Q T0516            83 VEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSK  162 (229)
Q Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~  162 (229)
                      +++|+++++.+|++..     ..++|+|++|++||++.+ ..+++.++++||+||+|+|.++|+.+.+..  .++++|++
T Consensus        80 ~~~~~~~~~~~g~~~~-----~~~~p~~~~y~~~l~~~a-~~~~~~~~~~al~~~e~~Y~~~~~~~~~~~--~~~~~y~~  151 (206)
T d1rtwa_          80 LEMFEKKAQELGISLN-----GEIDWRAKSYVNYLLSVA-SLGSFLEGFTALYCEEKAYYEAWKWVRENL--KERSPYQE  151 (206)
T ss_dssp             HHHHHHHHHHTTCCSS-----SCCCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHHHHHC--SSCCTTHH
T ss_pred             HHHHHHHHHHHCCCCC-----CCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHH
T ss_conf             9999999998198633-----434604789999999987-469878899999999999999999876426--66885888


Q ss_pred             HHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987138-258999999999999988418988999999999999999999999986
Q T0516           163 WFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAY  216 (229)
Q Consensus       163 wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay  216 (229)
                      ||++|+ ++|.++++++++++|++++++++.+++++.++|+++|+||++||||||
T Consensus       152 wi~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~ay  206 (206)
T d1rtwa_         152 FINHWSSQEFGEYVKRIEKILNSLAEKHGEFEKERAREVFKEVSKFELIFWDIAY  206 (206)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9998678778999999999999999769999999999999999999999987439


No 5  
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=100.00  E-value=0  Score=321.96  Aligned_cols=203  Identities=14%  Similarity=0.117  Sum_probs=180.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516             2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG   81 (229)
Q Consensus         2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~   81 (229)
                      +|+++||+++.++|+++++||||++|++||||+++|++||+|||+||.+|+|+++.+++++|+.+.+.++.    .++++
T Consensus        28 ~~~~~L~~~~~~i~~~~~~h~Fv~~l~~GtL~~e~F~~YL~QDy~YL~~~~r~~a~~~aka~~~~~~~~~~----~~~~~  103 (231)
T d2a2ma1          28 SLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLMVQDGYYCFRGRDDYATAATCAQDETLREFFK----AKAKS  103 (231)
T ss_dssp             SHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHH
T ss_conf             49999999778999999889899998739999999999999899999999999999987599989999999----99999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             99999999987099987861015786689999999999851578799999999999999999999998423889760358
Q T0516            82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTS  161 (229)
Q Consensus        82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~  161 (229)
                      ++++|+.+++.+|++..+   ..+++|+|++|++||++.+. .|++.++++||+||+|+|.+||+++.+.  ..++++|+
T Consensus       104 e~~l~~~~~~~~gi~~~~---~~~~~p~t~aY~~~l~~~a~-~~~~~~~laallpC~w~Y~~ig~~l~~~--~~~~~~y~  177 (231)
T d2a2ma1         104 YDEYNETYHQTWHLREAS---GLIPGTDIKDYADYEAYVAG-SLASPYMCVVMLPCEYLWPWIANFLDGY--TPTNSLYR  177 (231)
T ss_dssp             HHHHHHHHHHTSCBCCGG---GBCCCHHHHHHHHHHHHHHH-HSCTHHHHHHHHHHHHHHHHHHHHHGGG--SCTTSTTH
T ss_pred             HHHHHHHHHHHCCCCHHH---CCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHH
T ss_conf             999999999984997453---17987589999999999882-6999999999999999999999987744--78898469


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             998713825899999999999998841898899999999999999999999998612
Q T0516           162 KWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN  218 (229)
Q Consensus       162 ~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~  218 (229)
                      +||+.| ++|.+.|.++++++|+++...++   +++.++|.++|+||++|||||+-.
T Consensus       178 ~WI~~y-~~f~~~v~~~~~~ld~~~~~~~~---e~~~~iF~~~~~lE~~Fwd~A~~~  230 (231)
T d2a2ma1         178 FWIEWN-GGTPNGAYQMGNMLEQYRDKIDE---DKAVEIFNTAMNYELKVFTSSTIL  230 (231)
T ss_dssp             HHHHHH-CSCCHHHHHHHHHHHTTGGGSCH---HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHC-HHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             997817-03899999999999987351689---999999999999999999872534


No 6  
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00  E-value=0  Score=327.13  Aligned_cols=210  Identities=12%  Similarity=0.112  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---
Q ss_conf             77899998589999986085789985589998999999999999999999999999984599889999999999999---
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFML---   79 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~---   79 (229)
                      ++++|++++.++|+++++||||++|++||||+++|++||+|||+||.+|+|+++.+++++|+++.+..+...+.+..   
T Consensus         2 ~~d~l~~~~~~~w~~~~~HPFv~~l~~GtL~~e~f~~Yl~QDy~yl~~~~r~~a~~~~ka~~~~~~~~~~~~l~~~~~~~   81 (215)
T d2f2ga1           2 VIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRACKDSGESSDMEVVLGGIASL   81 (215)
T ss_dssp             HHHHHHHHTHHHHHHHTSCSCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             67999997799999998897999977299999999999999999999999999999886899799999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             99999999999870999878610157866899999999998515787999999999999999999999984238897603
Q T0516            80 EGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESV  159 (229)
Q Consensus        80 ~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~  159 (229)
                      ..|..+|..+++.+|++.+.    .++.|+|++|++||...+...++++.++++++||+|+|.++|+.+.+.+. ..+++
T Consensus        82 ~~e~~~~~~~~~~~~~~~~~----~~~~p~~~~y~~~l~~~~~~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~-~~~~~  156 (215)
T d2f2ga1          82 NDEIEWFKREGSKWDVDFST----VVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGN-KTPVE  156 (215)
T ss_dssp             HHHHHHHHHHHHHTTCCGGG----CCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHHH-TSSSC
T ss_pred             HHHHHHHHHHHHHCCCCHHH----CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCH
T ss_conf             99999999998755866876----05656799999999998742699999999999999999999999875567-67641


Q ss_pred             HHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5899871382-589999999999999884189889999999999999999999999861
Q T0516           160 TSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYI  217 (229)
Q Consensus       160 y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~  217 (229)
                      |++||++|++ +|.+.|.++++++|++++++++.+++++.++|+++|+||++||||||-
T Consensus       157 y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~Ay~  215 (215)
T d2f2ga1         157 LTGACHRWGNDGFKQYCSSVKNIAERCLENASGEVLGEAEDVLVRVLELEVAFWEMSRG  215 (215)
T ss_dssp             CCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999996883179999999999999987699999999999999999999999855469


No 7  
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00  E-value=2.8e-45  Score=316.47  Aligned_cols=207  Identities=18%  Similarity=0.318  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             77899998589999986085789985589998999999999999999999999999984599889999999999999999
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGE   82 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e   82 (229)
                      ++++|++.++|+|+++++||||++|++||||++.|++||+|||+||.+|+|+++.+++++|+.+++..+...+....++|
T Consensus        10 ~~~~l~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~yl~Qdy~yl~~~~r~la~~~~ka~~~~~~~~~~~~~~~~~~~e   89 (217)
T d1z72a1          10 TVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADE   89 (217)
T ss_dssp             HHHHHHHTTHHHHHHHHTCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             79999986899999998899999975699999999999999999999999999999871998588999999999999877


Q ss_pred             HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999999870999878610157866899999999998515787999999999999999999999984238897603589
Q T0516            83 VEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSK  162 (229)
Q Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~  162 (229)
                      .++|+++++.+|++.+++... +++|+|.+|++|+++++ ..+++..+++||+||+|+|.+||+++..   ...+++|.+
T Consensus        90 ~~~~~~~~~~~gi~~~~~~~~-~~~p~t~~y~~~l~~~a-~~~~~~~~l~al~~~~~~Y~~~~~~~~~---~~~~~~y~~  164 (217)
T d1z72a1          90 DGYFQKAFKELKVAENDYLEV-TLHPVTKAFQDLMYSAV-ASSDYAHLLVMLVIAEGLYLDWGSKDLA---LPEVYIHSE  164 (217)
T ss_dssp             HHHHHHHHHHTTCCTHHHHSC-CCCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHTCSSC---CCSSHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHCCCC-CCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHH
T ss_conf             899999999909896660245-77838669999999987-2599999999999999999999989863---888751779


Q ss_pred             HHHHCC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987138-258999999999999988418988999999999999999999999986
Q T0516           163 WFQFYS-TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAY  216 (229)
Q Consensus       163 wi~~ys-~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay  216 (229)
                      ||++|+ ++|.++|..+.+++|+++.  ++++++++.++|+++|++|++||||||
T Consensus       165 wi~~~~~~~f~~~v~~l~~~ld~~~~--~~~~~~~~~~~f~~~~~lE~~Fwd~ay  217 (217)
T d1z72a1         165 WINLHRGPFFAEWVQFLVDELNRVGK--NREDLTELQQRWNQAVALELAFFDIGY  217 (217)
T ss_dssp             HHHTTCSHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99980998799999999999998829--999999999999999999999976249


No 8  
>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3.7e-36  Score=256.46  Aligned_cols=177  Identities=11%  Similarity=0.091  Sum_probs=152.4

Q ss_pred             HHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58999998608578998558999899999999999999999999999998459988999999999999999999999999
Q T0516            11 SRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGEVEAHEVLA   90 (229)
Q Consensus        11 ~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e~~~~~~~~   90 (229)
                      +.++.+++..|||       +||+++|++||+|||+||.+|+|++++++++||+. ++..+...+.. +..|+.+|+.++
T Consensus         2 ~~~~~~~~~~~pf-------~L~~e~F~~YL~QD~~yl~~~~r~~a~~~~ka~~~-~~~~~~~~~~~-~~~E~~~~~~~~   72 (180)
T d1wwma1           2 VPGLLEEIKALPL-------RLDEERFRFWLQQDYPFVEALYRYQVGLLLEAPQA-HRAPLVQALMA-TVEELDWLLLQG   72 (180)
T ss_dssp             CSSHHHHHHHCCC-------CCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHH-HHHHHHHHHTTT
T ss_pred             CCHHHHHHHHCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf             7079999975888-------99999999999989999999999999999829989-99999999989-999999999988


Q ss_pred             HHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC-C
Q ss_conf             870999878610157866899999999998515787999999999999999999999984238897603589987138-2
Q T0516            91 DFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS-T  169 (229)
Q Consensus        91 ~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~~~y~~wi~~ys-~  169 (229)
                      +.+++         +++|+|.+|++||.+.+  .+++.++++|++||+|+|.+||+++.+     .+++|++||++|+ +
T Consensus        73 ~~~~~---------~~~p~~~~Y~~~l~~~a--~~~~~~~l~al~pc~~~Y~~~~~~~~~-----~~~~y~eWI~~y~~~  136 (180)
T d1wwma1          73 ASPSA---------PVHPVRAGYIALLEEMG--RLPYAYRVVFFYFLNGLFLEAWAHHVP-----EEGPWAELSQHWFAP  136 (180)
T ss_dssp             CCSSS---------CCCHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHSC-----SSSHHHHHHHHHSCT
T ss_pred             HHCCC---------CCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHCCCH
T ss_conf             86699---------99858999999999874--667299999999999999999997521-----376389999872998


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5899999999999998841898899999999999999999999998
Q T0516           170 EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMA  215 (229)
Q Consensus       170 ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~A  215 (229)
                      +|.+.|..+.+++|+.+..+++++   +.++|.++|++|++||||+
T Consensus       137 ~F~~~v~~l~~~vd~~~~~~~~~~---~~~~F~~~~~lE~~FW~m~  179 (180)
T d1wwma1         137 EFQAVLYDLEVLARGLWEDLDPEV---VRTYLRRILEAEKATWSLL  179 (180)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCHHH---HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHC
T ss_conf             899999999999999860399999---9999999999999997504


No 9  
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}
Probab=99.96  E-value=3.6e-28  Score=203.49  Aligned_cols=206  Identities=11%  Similarity=0.122  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Q ss_conf             5778999985899999860857899855899989999999999999999999999999845998899999999999999-
Q T0516             2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE-   80 (229)
Q Consensus         2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~-   80 (229)
                      +|.++|.+...+  ..+.+|||+++|++||||.+.|++|++|||+|+.+|.|+++.+++++|+++.+..+...+..... 
T Consensus         1 ~f~~~l~~~~~~--~~~~~HPf~~~l~~G~l~~e~~~~~~~Q~y~~v~~f~r~la~~~~~~~~~~~~~~l~~~l~~e~~~   78 (213)
T d1rcwa_           1 NFLDQLDLIIQN--KHMLEHTFYVKWSKGELTKEQLQAYAKDYYLHIKAFPKYLSAIHSRCDDLEARKLLLDNLMDEENG   78 (213)
T ss_dssp             CHHHHHHHHHHH--TCGGGSHHHHHHHTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHH--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf             978999999865--713168799997769999999999999999999999999999988445437788999999988624


Q ss_pred             --HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf             --999999999987099987861015786689999999999851578799999999999999999999998423889---
Q T0516            81 --GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLN---  155 (229)
Q Consensus        81 --~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~---  155 (229)
                        .+..++..+++.+|++.+++....+ .|+|.+|+++++..+ ..+++..+++++++|+|+|..++..+.+..+..   
T Consensus        79 ~~~h~~l~~~~~~~~g~~~~~~~~~~~-~p~t~a~~~~~~~~~-~~~~~~~~~a~~~~~e~~~~~~~~~~~~~~~~~~~~  156 (213)
T d1rcwa_          79 YPNHIDLWKQFVFALGVTPEELEAHEP-SEAAKAKVATFMRWC-TGDSLAAGVAALYSYESQIPRIAREKIRGLTEYFGF  156 (213)
T ss_dssp             SSCHHHHHHHHHHHTTCCHHHHHHCCC-CHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             430599999999980799999730210-047789999999998-141389999999999999998999999988871799


Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             760358998713825899999999999998841898899999999999999999999998
Q T0516           156 KESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMA  215 (229)
Q Consensus       156 ~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~A  215 (229)
                      .+..--.|++.|.....++...+.++++.+    ++++++++.++|.+++++|+.|||+.
T Consensus       157 ~~~~~~~~~~~h~~~D~~H~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~f~D~~  212 (213)
T d1rcwa_         157 SNPEDYAYFTEHEEADVRHAREEKALIEML----LKDDADKVLEASQEVTQSLYGFLDSF  212 (213)
T ss_dssp             CSGGGGHHHHHHHHHHHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             847776877999999999999999999877----99999999999999999999998636


No 10 
>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]}
Probab=99.95  E-value=1.3e-27  Score=199.83  Aligned_cols=215  Identities=12%  Similarity=0.084  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--
Q ss_conf             778999985899999860857899855899989999999999999999999999999845998899999999999999--
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE--   80 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~--   80 (229)
                      |.++|.+......   .+|||+++|.+|+|+++.|+.|+.|+|+|+.+|+|.++.++++|||++.++.++..+.....  
T Consensus        11 F~~~L~~~~~~~h---~~HPF~~~l~~G~l~~e~l~~y~~Q~y~y~~~f~r~laai~a~~~d~~~r~~ll~nl~ee~g~~   87 (254)
T d1otva_          11 FEEALRAKGDFYH---IHHPYHIAMHNGDATRKQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSH   87 (254)
T ss_dssp             HHHHHHHGGGGSG---GGSHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHC---CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999999887624---7982999986799999999999999999999869999999953998899999999999885566


Q ss_pred             ---HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             ---99999999998709998786101578668999999999985157879999999999999999999999842388976
Q T0516            81 ---GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKE  157 (229)
Q Consensus        81 ---~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~~~~~~~  157 (229)
                         +..+++.++++.+|++.+++....++.|+|+.+++++...+ ..+++..++ +.+.+++.++.+....     ...-
T Consensus        88 ~~~~H~~l~~~f~~~lGl~~e~v~~~~~~lp~t~~~v~~~~~~~-~~~~~~~~~-a~~~~E~~~p~i~~~~-----~~gl  160 (254)
T d1otva_          88 GEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFA-RRACWQEAA-CSSLTELFAPQIHQSR-----LDSW  160 (254)
T ss_dssp             TCCCHHHHHHHHHHHTTCCHHHHHTCTTCCHHHHHHHHHHHHHH-HHSCHHHHH-HGGGGGGGCCSTTCCS-----SCSS
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCHHHHH-HHHHHHHHHHHHHHHH-----HHHH
T ss_conf             77637799999999909999997334668889999999999986-334388999-9999999829999999-----9878


Q ss_pred             CHHHHHHHHCCCH-H-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCC
Q ss_conf             0358998713825-8-------9999999999999884189889999999999999999999999---861257999877
Q T0516           158 SVTSKWFQFYSTE-M-------DELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNM---AYINEKWEYGGN  226 (229)
Q Consensus       158 ~~y~~wi~~ys~e-f-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~---Ay~~e~w~~~~~  226 (229)
                      +.|..|++.++-+ |       ..+++...+++++++.  +++.++++.+++..+|+++|.|||+   ||..+.||++++
T Consensus       161 ~~~y~~i~~~~l~~F~~h~~~d~~h~e~~~~l~~~~~~--t~e~q~~~l~a~~~s~~~lw~flD~~~~aY~~~~~p~~~~  238 (254)
T d1otva_         161 PQHYPWIKEEGYFYFRSRLSQANRDVEHGLALAKAYCD--SAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTV  238 (254)
T ss_dssp             TTTCTTSCHHHHHHHHHHHHTCCSCTTHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCTTTTT
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             98657668888789999798718989999999999839--9999999999999999999999999999874899998767


Q ss_pred             CCC
Q ss_conf             789
Q T0516           227 NNE  229 (229)
Q Consensus       227 ~~~  229 (229)
                      .++
T Consensus       239 ~~~  241 (254)
T d1otva_         239 TDK  241 (254)
T ss_dssp             CSS
T ss_pred             CCC
T ss_conf             764


No 11 
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]} SCOP: d1iw1a_ d1iw0b_ d1v8xa_ d1iw1c_ d1wnwb_ d1wnwa_ d1wnxa_ d1wnvb_ d1wnva_ d1wnwc_ d1wnxb_ d1we1a_ d1we1d_ d1ni6c_ d1n45a_ d1ni6a_ d1ni6d_ d1xk3a_ d1xjza1 d1ozla_ d1xk0a1 d1j02a_ d1j2ca_ d1dvea_ d1xk1a1 d1ix3a_ d1dvga_ d1wova1 d1irma_ d1irmb_ d1irmc_
Probab=98.73  E-value=7.9e-07  Score=61.90  Aligned_cols=196  Identities=11%  Similarity=0.114  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             77899998589999986085789985589998999999999999999999999999984599889999999999999999
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEGE   82 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~e   82 (229)
                      ||.+|++.+...=+.+-++||++.+.+|.++++.+..||.|-|++....-+.+.............       ...+...
T Consensus         2 ~~~~Lr~~T~~~H~~aE~~~~~~~l~~g~~t~~~Y~~~L~~~y~vy~~lE~~l~~~~~~~~~~~~~-------~~~l~R~   74 (207)
T d1wzda1           2 LAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLL-------DPALNRA   74 (207)
T ss_dssp             HHHHHHHHTHHHHHHHHTCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTS-------CGGGCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC-------CHHHHHH
T ss_conf             578999999999999874288999855888999999999999999878999999731462111001-------2568768


Q ss_pred             HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCC
Q ss_conf             99999999870999878610157866899999999998515787999999999999999999999984----23889760
Q T0516            83 VEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAME----DPKLNKES  158 (229)
Q Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~----~~~~~~~~  158 (229)
                      ..+-+++. .+|.+.+... ..++.|++..|++++...+. ..+....++.++.-+.+-..-|+.+.+    ....+++.
T Consensus        75 ~~l~~Dl~-~l~~~~~~~~-~~~~~~~~~~y~~~i~~~~~-~~~p~~lla~~Yv~~~g~l~GGq~i~~~i~~~~~l~~~~  151 (207)
T d1wzda1          75 EVLARDLD-KLNGSSEWRS-RITASPAVIDYVNRLEEIRD-NVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEA  151 (207)
T ss_dssp             HHHHHHHH-HHHSSSTHHH-HCCCCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred             HHHHHHHH-HHCCCCCCCC-CCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999-8468843200-04456689999999998335-899899999999999998989999999999750678875


Q ss_pred             HHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             35899871382-5899999999999998841898899999999999999999999
Q T0516           159 VTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFF  212 (229)
Q Consensus       159 ~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fw  212 (229)
                       . .+..+++. +-..+-..+.+.+|++.  .++++++++++--..+=.+-..-+
T Consensus       152 -~-~fy~f~~~~~~~~~k~~~r~~Ld~~~--~~~~~~~~ii~eA~~aF~~~~~l~  202 (207)
T d1wzda1         152 -L-GFYHFEGIAKLKVYKDEYREKLNNLE--LSDEQREHLLKEATDAFVFNHQVF  202 (207)
T ss_dssp             -C-GGGCCTTCSCHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -C-CCCCCCCCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -4-22236774786899999999984237--999899999999999999999999


No 12 
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.70  E-value=3.9e-06  Score=57.27  Aligned_cols=198  Identities=12%  Similarity=0.154  Sum_probs=118.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             57789999858999998608578998558999899999999999999999999999998459988999999999999999
Q T0516             2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLEG   81 (229)
Q Consensus         2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~~   81 (229)
                      +||++|++...+.=+.+-++||++.+.+|+++++.+..||.|-|++....-+.+...... +..... .+.    ..+..
T Consensus         3 ~ls~~Lr~~T~~~H~~~E~~~~~~~l~~g~~t~~~Y~~~L~~~y~vy~~lE~~l~~~~~~-~~~~~~-~~~----~~~~R   76 (214)
T d1n45a_           3 DLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKES-PVFAPV-YFP----EELHR   76 (214)
T ss_dssp             SHHHHHHHHTHHHHHHHHHSHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTTGGG-CCH----HHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHH-CCH----HHHCC
T ss_conf             499999999999999998476999987699899999999999999998889999970477-511010-295----76320


Q ss_pred             HHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC
Q ss_conf             9999999998709998786101578668999999999985157879999999999999999999999842----388976
Q T0516            82 EVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMED----PKLNKE  157 (229)
Q Consensus        82 e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~~----~~~~~~  157 (229)
                      ...+.+++....|..+.+   ..++.|+|..|++++...+.  .+....++.++.-+.+-..-|+.+.+.    ....++
T Consensus        77 ~~~l~~DL~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~--~~p~~llg~~YV~e~g~~~GGq~i~~~~~~~l~l~~~  151 (214)
T d1n45a_          77 KAALEQDLAFWYGPRWQE---VIPYTPAMQRYVKRLHEVGR--TEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSS  151 (214)
T ss_dssp             HHHHHHHHHHHHCTTGGG---TSCCCHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred             CHHHHHHHHHHCCCCHHC---CCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             166899999864974010---47887678888877764401--6999999999999988853799999999986399998


Q ss_pred             -CHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -035899871382589999-99999999988418988999999999999999999999
Q T0516           158 -SVTSKWFQFYSTEMDELV-DVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFN  213 (229)
Q Consensus       158 -~~y~~wi~~ys~ef~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd  213 (229)
                       .-+ .+...++....+.. ..+.+.+|++.  .++++++++++--+.+-++-..-++
T Consensus       152 ~~~~-~f~~~~~~~~~~~~k~~f~~~l~~~~--~~~~~~~~ii~eA~~aF~~~~~lf~  206 (214)
T d1n45a_         152 GEGL-AFFTFPNIASATKFKQLYRSRMNSLE--MTPAVRQRVIEEAKTAFLLNIQLFE  206 (214)
T ss_dssp             SCSC-GGGCCTTCSCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-EEEECCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8751-01105775669999999999987356--9999999999999999999999999


No 13 
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=98.64  E-value=2.1e-06  Score=59.07  Aligned_cols=191  Identities=11%  Similarity=0.114  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHH
Q ss_conf             7789999858999998608578998558999899999999999999999999999998459-----98899999999999
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMS-----SMEDVKFLVEQIEF   77 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~-----~~~~~~~l~~~~~~   77 (229)
                      |+.+|++...+.=+++-++||+..+.+|+++++.+..||.+-|++....-..+........     +++..+     .  
T Consensus         2 l~~~Lr~~T~~~H~~~E~~~~~~~l~~g~~~~~~Y~~~L~~~y~~y~~lE~~l~~~~~~~~~~~~~~~~~~R-----~--   74 (207)
T d1wzda1           2 LAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNR-----A--   74 (207)
T ss_dssp             HHHHHHHHTHHHHHHHHTCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTSCGGGCC-----H--
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHH-----H--
T ss_conf             779999999999999982768999876999999999999999999999999999714473122015777765-----4--


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----CCC
Q ss_conf             9999999999999870999878610157866899999999998515787999999999999999999999984----238
Q T0516            78 MLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAME----DPK  153 (229)
Q Consensus        78 ~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~~~~~----~~~  153 (229)
                           ..+-.+ ++.+|.+.+... ..++.|.+..|++++...+ ...+....++.++.-+.+-.--|+.+.+    ...
T Consensus        75 -----~~l~~D-L~~l~~~~~~~~-~~~~~~~~~~y~~~~~~~~-~~~~p~~llg~~Yv~e~G~~~GGq~i~k~l~~~l~  146 (207)
T d1wzda1          75 -----EVLARD-LDKLNGSSEWRS-RITASPAVIDYVNRLEEIR-DNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYG  146 (207)
T ss_dssp             -----HHHHHH-HHHHHSSSTHHH-HCCCCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHH-HHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -----669989-999749832212-5787745999999999874-34899999999999999874011899999999729


Q ss_pred             CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8976035899871382-5899999999999998841898899999999999999999999
Q T0516           154 LNKESVTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFF  212 (229)
Q Consensus       154 ~~~~~~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fw  212 (229)
                      .+++.  ..+...++. +-...-..+.+.+|.+  ..++++++++++--+.+=++-..-+
T Consensus       147 l~~~~--~~fy~f~~~~~~~~~k~~~r~~l~~~--~~~~~~~~~ii~eA~~aF~~~~~if  202 (207)
T d1wzda1         147 VDPEA--LGFYHFEGIAKLKVYKDEYREKLNNL--ELSDEQREHLLKEATDAFVFNHQVF  202 (207)
T ss_dssp             CCGGG--CGGGCCTTCSCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC--CCCCCCCCCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99877--61000588677999999999998635--7999999999999999999999999


No 14 
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]}
Probab=98.58  E-value=3.5e-06  Score=57.66  Aligned_cols=196  Identities=14%  Similarity=0.194  Sum_probs=114.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             95778999985899999860857899855899989999999999999999999999999845998899999999999999
Q T0516             1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSSMEDVKFLVEQIEFMLE   80 (229)
Q Consensus         1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~~~~~~~~l~~~~~~~~~   80 (229)
                      |+|+++|++...+.=+.+-++||++.+..|.++++.+..||.|-|++....-+.+...... +.....  ...    .+.
T Consensus         2 ~~l~~~Lr~~T~~~H~~~E~~~~~~~l~~g~~s~~~Y~~~L~~~y~vy~~lE~~l~~~~~~-~~~~~~--~~~----~~~   74 (222)
T d1we1a_           2 VNLASQLREGTKKSHSMAENVGFVKCFLKGVVEKNSYRKLVGNLYFVYSAMEEEMAKFKDH-PILSHI--YFP----ELN   74 (222)
T ss_dssp             CCHHHHHHHHTHHHHHHHHTSHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTS-TTGGGG--CCT----TSC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCC--CCH----HHH
T ss_conf             4089999998999999997668999987589899999999999999999889999970567-523433--476----564


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCC
Q ss_conf             999999999987099987861015786689999999999851578799999999999999999999----9984238897
Q T0516            81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGK----RAMEDPKLNK  156 (229)
Q Consensus        81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~----~~~~~~~~~~  156 (229)
                      .-..+..++....+.++..   ..++.|++..|++++...+ . ++....++.++.-+.+-..-|+    .+.+....++
T Consensus        75 R~~~l~~DL~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~p~~llg~~YV~~~g~~~GGq~i~~~~~~~~~l~~  149 (222)
T d1we1a_          75 RKQSLEQDLQFYYGSNWRQ---EVKISAAGQAYVDRVRQVA-A-TAPELLVAHSYTRYLGDLSGGQILKKIAQNAMNLHD  149 (222)
T ss_dssp             CHHHHHHHHHHHHCTTHHH---HCCCCHHHHHHHHHHHHHH-H-HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHHHH-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             4899999998716765323---5789866899999887553-0-499999999999998774544899999999739997


Q ss_pred             CCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6035899871382-5899999999999998841898899999999999999999999
Q T0516           157 ESVTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFF  212 (229)
Q Consensus       157 ~~~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fw  212 (229)
                      +..  .+...++. +-...-..+.+.+|.+.  .++.+++++.+--..+-++-.+-+
T Consensus       150 ~~~--~fy~~~~~~~~~~~k~~~~~~l~~~~--~~~~~~~~ii~eA~~aF~~~~~lf  202 (222)
T d1we1a_         150 GGT--AFYEFADIDDEKAFKNTYRQAMNDLP--IDQATAERIVDEANDAFAMNMKMF  202 (222)
T ss_dssp             SSC--GGGCCTTCSSHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--CCEECCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             776--20015775658999999999987357--999999999999999999999999


No 15 
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=98.50  E-value=5.3e-06  Score=56.44  Aligned_cols=191  Identities=12%  Similarity=0.101  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q ss_conf             57789999858999998608578998558999899999999999999999999999998459-98899999999999999
Q T0516             2 TFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMS-SMEDVKFLVEQIEFMLE   80 (229)
Q Consensus         2 sfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a~-~~~~~~~l~~~~~~~~~   80 (229)
                      .||++|++...+.=+.+-+++|++.+.+|.++++.+..||.|-|+...    .+-.++.+.. ++-...+...    .+.
T Consensus         2 ~ls~~Lre~T~~~H~~aE~~~f~~~l~~g~~s~~~Y~~~L~~~y~vY~----~LE~~~~~~~~~~~~~~~~~~----~l~   73 (249)
T d1wova1           2 NLAQKLRYGTQQSHTLAENTAYMKCFLKGIVEREPFRQLLANLYYLYS----ALEAALRQHRDNEIISAIYFP----ELN   73 (249)
T ss_dssp             CHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHHHHHHHHHHHHHHH----HHHHHHHHTTTSHHHHHHCCG----GGC
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCH----HHH
T ss_conf             589999998999999998357999987589899999999999999999----999999865788400133376----653


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCC
Q ss_conf             999999999987099987861015786689999999999851578799999999999999999999----9984238897
Q T0516            81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGK----RAMEDPKLNK  156 (229)
Q Consensus        81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~~Y~~i~~----~~~~~~~~~~  156 (229)
                      ....+-+++...+|.++...   ..+.|++..|++++...+. . +....++-++.-+.+=..-|+    .+....+..+
T Consensus        74 R~~~l~~DL~~l~g~~~~~~---~~~~~at~~Yv~~i~~i~~-~-~P~~llah~YvrylGdlsGGQ~I~k~l~~~l~l~~  148 (249)
T d1wova1          74 RTDKLAEDLTYYYGPNWQQI---IQPTPCAKIYVDRLKTIAA-S-EPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPE  148 (249)
T ss_dssp             CHHHHHHHHHHHHCTTHHHH---CCCCHHHHHHHHHHHHHHH-H-CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHHHHCCCCCHHC---CCCCHHHHHHHHHHHHHHH-H-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf             32568888998717770204---7888679999999999986-3-87999999999998772113477787776318999


Q ss_pred             --CCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             --6035899871382-58999999999999988418988999999999999999
Q T0516           157 --ESVTSKWFQFYST-EMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIH  207 (229)
Q Consensus       157 --~~~y~~wi~~ys~-ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~  207 (229)
                        +..|..|-+.-.+ +-..+-..+.+.+|.+  ..++.+++++++--..+-++
T Consensus       149 ~~g~~fy~F~~~~~~~d~~~fK~~~r~~ld~~--~~~~~~~~~ii~EA~~aF~l  200 (249)
T d1wova1         149 GEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSL--PLDEATINRIVEEANYAFSL  200 (249)
T ss_dssp             TSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
T ss_conf             87632243378773537999999999998536--79999999999999999999


No 16 
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria meningitidis [TaxId: 487]}
Probab=96.16  E-value=0.044  Score=30.40  Aligned_cols=181  Identities=13%  Similarity=0.074  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH
Q ss_conf             95778999985899999860857899855899989999999999999999999999999--8459988999999999999
Q T0516             1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLI--PKMSSMEDVKFLVEQIEFM   78 (229)
Q Consensus         1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~--~~a~~~~~~~~l~~~~~~~   78 (229)
                      |||+++|++...+.=+++-+.++   +.+|.++++.++.||.+-|.+....-..+....  .-.++...... .      
T Consensus         2 ~tl~~rLr~~T~~~H~~~e~~~~---~~~~~~~~~~Y~~~L~~~y~~y~~lE~~~~~~~~~~~~~~~~~~~R-~------   71 (200)
T d1j77a_           2 LTFAKRLKADTTAVHDSVDNLVM---SVQPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMAR-Y------   71 (200)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHH---HTCTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHSTTGGGGCC-H------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC-C------
T ss_conf             77899999999999999984088---7535799999999999999999999999986744533356576357-3------


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHCCCCC
Q ss_conf             9999999999998709998786101578668999999999985157879999999999999---9999999998423889
Q T0516            79 LEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPY---VYAVIGKRAMEDPKLN  155 (229)
Q Consensus        79 ~~~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~---~Y~~i~~~~~~~~~~~  155 (229)
                          ..+.++ ++.+|.+........+ .+                 +....+++++..+.   +=..|.+.+. .....
T Consensus        72 ----~~L~~D-L~~Lg~~~~~~~~~~~-~~-----------------~~~~~lg~~YV~eGs~lGGq~i~r~~~-~~~~~  127 (200)
T d1j77a_          72 ----DAVTQD-LKDLGEEPYKFDKELP-YE-----------------AGNKAIGWLYCAEGSNLGAAFLFKHAQ-KLDYN  127 (200)
T ss_dssp             ----HHHHHH-HHHTTCCCCCCSSCCC-CC-----------------CHHHHHHHHHHHHHHHHTTHHHHHHHH-TTTCB
T ss_pred             ----HHHHHH-HHHHCCCHHHCCCCCC-CC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
T ss_conf             ----779999-9982798242225677-68-----------------879999999999517899999999999-80699


Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             760358998713825899999999999998841898899999999999999999999998612
Q T0516           156 KESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN  218 (229)
Q Consensus       156 ~~~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~Ay~~  218 (229)
                      ++.. ..+...|+..-....+.+.+.+|.+  ..++.+++++++--+.+=.+=...++..+..
T Consensus       128 ~~~~-~~f~~~~~~~~~~~w~~f~~~L~~~--~~~~~~~~~ii~~A~~aF~~~~~~~~e~~~~  187 (200)
T d1j77a_         128 GEHG-ARHLAPHPDGRGKHWRAFVEHLNAL--NLTPEAEAEAIQGAREAFAFYKVVLRETFGL  187 (200)
T ss_dssp             TTBB-CGGGSCCTTCHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCC-CHHHCCCCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8633-0420677645389999999999747--9999999999999999999999999986153


No 17 
>d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.01  E-value=6.1  Score=16.20  Aligned_cols=170  Identities=11%  Similarity=-0.002  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHH
Q ss_conf             778999985899999860857899855899989999999999999999999999999--845998899999999999999
Q T0516             3 FSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLI--PKMSSMEDVKFLVEQIEFMLE   80 (229)
Q Consensus         3 fs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~--~~a~~~~~~~~l~~~~~~~~~   80 (229)
                      -|++|++...+.=+.+-++++..   ..-.+++.++.||.+-|.+....-..+....  ...++....... .       
T Consensus         3 ~s~rLr~~T~~~H~~~e~~~~~~---~~~~~~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~~~~~~~~R~-~-------   71 (187)
T d1sk7a_           3 RSQRLNLLTNEPHQRLESLVKSK---EPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFPGLASRARD-D-------   71 (187)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHH---CTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHSTTGGGGCCH-H-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-H-------
T ss_conf             78999999999999999615542---215999999999999999999999999865336555550777888-8-------


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHCCCCCCC
Q ss_conf             99999999998709998786101578668999999999985157879999999999999---999999999842388976
Q T0516            81 GEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPY---VYAVIGKRAMEDPKLNKE  157 (229)
Q Consensus        81 ~e~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~laal~pc~~---~Y~~i~~~~~~~~~~~~~  157 (229)
                         .+..+ +..+|.+.........  |              ...+....+++++..+.   +=..|++.+.+ ....++
T Consensus        72 ---~L~~D-L~~l~~~~~~~~~~~~--~--------------~~~~~a~~lg~~YV~eGs~lGGq~i~r~l~~-~~~~~~  130 (187)
T d1sk7a_          72 ---AARAD-LADLGHPVPEGDQSVR--E--------------ADLSLAEALGWLFVSEGSKLGAAFLFKKAAA-LELDEN  130 (187)
T ss_dssp             ---HHHHH-HHHHTCCCCCCCCTTT--T--------------SCCCHHHHHHHHHHHHHTTTTHHHHHHHHGG-GTCBTT
T ss_pred             ---HHHHH-HHHHCCCCCCCCCCCC--C--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCC
T ss_conf             ---99999-9984799864466767--6--------------7768999999999998658679999999998-169986


Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             03589987138258999999999999988418988999999999999999
Q T0516           158 SVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIH  207 (229)
Q Consensus       158 ~~y~~wi~~ys~ef~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~~~~  207 (229)
                      ... .+...++.+-...-+.+.+.+|++  ..++++++++++--..+=.+
T Consensus       131 ~g~-~f~~~~~~~~~~~w~~f~~~L~~~--~~~~~~~~~~i~~A~~aF~~  177 (187)
T d1sk7a_         131 FGA-RHLAEPEGGRAQGWKSFVAILDGI--ELNEEEERLAAKGASDAFNR  177 (187)
T ss_dssp             BBC-GGGSCCTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CCCCCCCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
T ss_conf             453-001777756389999999999757--89999999999999999999


No 18 
>d1dvka_ a.72.1.1 (A:) Functional domain of the splicing factor Prp18 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.22  E-value=11  Score=14.40  Aligned_cols=15  Identities=0%  Similarity=0.018  Sum_probs=6.3

Q ss_pred             HHHCCCCHHHHHHHH
Q ss_conf             851578799999999
Q T0516           120 NAFARENAAFTIAAM  134 (229)
Q Consensus       120 ~a~~~~~~~~~laal  134 (229)
                      .+..+.+|+.|++.+
T Consensus       108 LaIGNA~WPIGVT~V  122 (169)
T d1dvka_         108 LSIGNVAWPIGVTSV  122 (169)
T ss_dssp             HHHTBCCCCSCC---
T ss_pred             HHCCCCCCCCCEEEE
T ss_conf             870578876330342


No 19 
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=26.21  E-value=7.5  Score=15.62  Aligned_cols=38  Identities=8%  Similarity=0.109  Sum_probs=30.1

Q ss_pred             CCHHHHHHHHHHHHHHH---HHCCHHHHHHHCCCCCHHHHHH
Q ss_conf             95778999985899999---8608578998558999899999
Q T0516             1 MTFSKELREASRPIIDD---IYNDGFIQDLLAGKLSNQAVRQ   39 (229)
Q Consensus         1 Msfs~~L~~~~~~l~~~---~~~HpFv~~l~~GtL~~e~f~~   39 (229)
                      |+| ++++...+..|..   ++-.|.-.++..||..+..|-+
T Consensus         1 m~f-q~~i~~L~~~W~~~gC~i~qpyd~evGAgT~~p~T~lr   41 (281)
T d1j5wa_           1 MYL-QDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFG   41 (281)
T ss_dssp             CCH-HHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTG
T ss_pred             CCH-HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHH
T ss_conf             968-99999999999878978977765544646687588874


No 20 
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.42  E-value=18  Score=13.07  Aligned_cols=21  Identities=14%  Similarity=0.026  Sum_probs=16.0

Q ss_pred             HHHHHHHHHCCHHHHHHHCCC
Q ss_conf             589999986085789985589
Q T0516            11 SRPIIDDIYNDGFIQDLLAGK   31 (229)
Q Consensus        11 ~~~l~~~~~~HpFv~~l~~Gt   31 (229)
                      ..+..++..+||+|+-+..|-
T Consensus        67 p~~~lq~fK~HP~I~~ll~GG   87 (99)
T d2gmha2          67 PFREFQRWKHHPSIKPTLEGG   87 (99)
T ss_dssp             HHHHHHHHTTSTTTHHHHTTC
T ss_pred             HHHHHHHHHCCHHHHHHHCCC
T ss_conf             999999986598899986698


No 21 
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.96  E-value=20  Score=12.75  Aligned_cols=53  Identities=11%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             95778999985899999860857899855899989999999999999999999999999845
Q T0516             1 MTFSKELREASRPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIPKM   62 (229)
Q Consensus         1 Msfs~~L~~~~~~l~~~~~~HpFv~~l~~GtL~~e~f~~yl~QD~~yl~~~~r~l~~~~~~a   62 (229)
                      |||+.+||.....|..         .+.+|.-..+.+..|+.+-..-=..|++-|..++.+.
T Consensus         1 ms~~~~l~d~~~~l~~---------~~~~~~~~~~~~~~~~~eRa~iE~eYak~L~kl~~~~   53 (288)
T d2efla1           1 MSWGTELWDQFDNLEK---------HTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKY   53 (288)
T ss_dssp             CCHHHHTTTCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9703346778999999---------9998999999999999999999999999999999987


Done!