Query T0517 YP_755085.1, Syntrophomonas wolfei str. Goettingen, 159 residues
Match_columns 159
No_of_seqs 106 out of 278
Neff 6.2
Searched_HMMs 22458
Date Fri May 21 18:04:10 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0517.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0517.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qs7_A Uncharacterized protein 100.0 1.8E-39 8E-44 266.0 15.0 137 2-159 6-144 (144)
2 1jx7_A Hypothetical protein YC 99.7 1E-15 4.6E-20 117.6 11.3 110 4-157 2-115 (117)
3 2d1p_B TUSC, hypothetical UPF0 99.5 3.8E-14 1.7E-18 107.8 10.1 112 4-157 2-117 (119)
4 2hy5_B Intracellular sulfur ox 99.3 1.6E-11 7.3E-16 91.4 9.1 113 3-157 5-134 (136)
5 2d1p_A TUSD, hypothetical UPF0 99.2 1.3E-10 5.7E-15 85.8 11.3 112 4-157 13-138 (140)
6 2hy5_A Putative sulfurtransfer 99.2 1.6E-10 7.2E-15 85.2 10.9 110 5-157 2-126 (130)
7 1l1s_A Hypothetical protein MT 98.7 4E-07 1.8E-11 64.0 11.7 104 1-154 1-108 (113)
8 2fb6_A Conserved hypothetical 98.6 5.5E-07 2.4E-11 63.1 9.9 105 2-157 6-115 (117)
9 2pd2_A Hypothetical protein ST 98.4 6E-06 2.7E-10 56.6 11.8 98 8-155 3-104 (108)
10 2hy5_C DSRH; DSRE, DSRF, sulfu 95.2 0.17 7.4E-06 28.9 9.3 46 111-156 53-98 (102)
11 2d1p_C TUSB, hypothetical prot 81.9 1.8 8.2E-05 22.3 4.8 47 109-156 46-92 (95)
12 2a5l_A Trp repressor binding p 71.8 5.2 0.00023 19.5 4.8 40 1-40 3-42 (200)
13 3bl5_A Queuosine biosynthesis 69.4 5.3 0.00024 19.4 4.4 39 1-44 1-39 (219)
14 2q9u_A A-type flavoprotein; fl 51.8 12 0.00053 17.2 4.9 39 2-40 255-293 (414)
15 2rk3_A Protein DJ-1; parkinson 50.0 13 0.00057 17.1 3.7 34 1-38 1-36 (197)
16 1x9a_A Hypothetical protein TM 40.6 18 0.0008 16.2 4.6 41 113-155 64-104 (107)
17 1o1z_A GDPD, glycerophosphodie 39.6 14 0.0006 16.9 2.3 88 3-112 10-102 (234)
18 2jug_A TUBC protein; docking d 33.8 23 0.001 15.5 2.9 50 102-151 6-60 (78)
19 3ks6_A Glycerophosphoryl diest 31.6 23 0.001 15.5 2.5 96 7-119 4-104 (250)
20 1rhx_A Conserved hypothetical 29.5 27 0.0012 15.0 2.7 42 112-155 43-84 (87)
21 2oog_A Glycerophosphoryl diest 29.0 23 0.001 15.5 2.1 48 2-49 20-72 (287)
22 3fni_A Putative diflavin flavo 28.7 28 0.0012 15.0 4.5 40 2-41 3-42 (159)
23 2ohh_A Type A flavoprotein FPR 26.4 31 0.0014 14.7 4.8 39 2-40 255-293 (404)
24 2o55_A Putative glycerophospho 24.6 33 0.0015 14.5 3.2 95 8-118 9-112 (258)
25 1a62_A RHO; transcription term 23.9 18 0.00078 16.2 0.7 30 101-138 9-38 (130)
26 1ehi_A LMDDL2, D-alanine:D-lac 22.7 36 0.0016 14.3 4.2 40 1-40 1-44 (377)
27 1m65_A Hypothetical protein YC 22.6 36 0.0016 14.2 2.7 18 102-119 172-189 (245)
28 2wm8_A MDP-1, magnesium-depend 22.3 37 0.0016 14.2 2.4 22 101-122 71-92 (187)
29 1nns_A L-asparaginase II; amid 21.8 38 0.0017 14.1 6.8 43 82-124 219-274 (326)
30 2vrn_A Protease I, DR1199; cys 21.6 38 0.0017 14.1 4.0 35 1-39 7-43 (190)
31 1h67_A Calponin alpha; cytoske 21.1 16 0.00069 16.5 -0.0 28 102-129 61-88 (108)
32 3dma_A Exopolyphosphatase-rela 20.1 41 0.0018 13.9 4.9 39 3-41 21-60 (343)
No 1
>2qs7_A Uncharacterized protein; NP_342590.1, protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=100.00 E-value=1.8e-39 Score=266.01 Aligned_cols=137 Identities=31% Similarity=0.546 Sum_probs=119.8
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 87735799860988888899999999986189448987412366551221112233332100001246765002254435
Q T0517 2 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
.+||++||++|||+||+|+||++|++|+|+|+||+|||||||+++++|+..+..+.+ .+..
T Consensus 6 ~~kkl~II~~sg~~dr~~~a~~lA~~Aaa~g~eV~vFft~~gl~~l~k~~~~~~~~~-------------------~~~~ 66 (144)
T 2qs7_A 6 KKKKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPP-------------------QIDK 66 (144)
T ss_dssp -CCEEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTBHHHHHCCSCC-------------------CCCG
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCC-------------------CCCC
T ss_conf 567779999669889999999999999986994699983116887606654345888-------------------6431
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CEEEEECCHHHHHCCCHHHCCCCC-EEECHHHHHHHHHCCCCEEEC
Q ss_conf 701345899999998568997899999998769-899882201655278866736764-051288999987458824309
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKE-VKFYACQLSVEIMGFKKEELFPEV-QIMDVKEYLKNALESDLQLFI 159 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~G-vk~~aC~msm~l~gi~~edLidgV-ei~Ga~tFl~~A~~a~v~LFI 159 (159)
++++.+.+ +++.|++.|+|+++||+++|+++| ||+|||+++|+++|+++|||+|+| +|+|+++|++++ +++++|||
T Consensus 67 ~~~~~~~~-~~~~~~~~~~p~~~eli~~a~~~G~Vk~~aC~~~~~~~gi~~~dLi~~vd~i~G~~~fl~~a-~~~~~LFI 144 (144)
T 2qs7_A 67 NYEQMGPI-MMQKMQEMKYPMWHQLVQQAKEIGEVKVFACSTTMEFFGIKREDLAEFVDDVVGVATFLDRA-EGGTTLFI 144 (144)
T ss_dssp GGGGGHHH-HHHHHHHTTCCCHHHHHHHHHHHSEEEEEEEHHHHHHTTCCGGGBCTTCCEEECHHHHHHHH-TTSEEEEC
T ss_pred CHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHH-CCCCEEEC
T ss_conf 22666899-99998504898899999999974995899717879984999778232031104599999971-57984669
No 2
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=99.65 E-value=1e-15 Score=117.63 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=94.9
Q ss_pred CCEEEEEEECC--HHHHHHHHHHHHHHHH--CCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 73579986098--8888899999999986--1894489874123665512211122333321000012467650022544
Q T0517 4 KKMNLLLFSGD--YDKALASLIIANAARE--MEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLS 79 (159)
Q Consensus 4 kkl~II~~sG~--~dk~~~~~ilA~~Aaa--~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s 79 (159)
||+.||+++|- .++++.++-+|.++.+ .|.||.|||+..|+.+.+|+..+
T Consensus 2 ~k~~ii~~~~P~~~~~~~~al~fa~A~~a~~~~~eV~vf~~~dgV~~~~~~~~~-------------------------- 55 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKP-------------------------- 55 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCC--------------------------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCC--------------------------
T ss_conf 679999837998828899999999999963789718999973447763056787--------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCCEE
Q ss_conf 357013458999999985689978999999987698998822016552788667367640512889999874588243
Q T0517 80 KMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQL 157 (159)
Q Consensus 80 ~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v~L 157 (159)
.+.+++.++++.+.+.|+++|+|+.+++..|++++||+||++++|..++.+.+.++|.+|
T Consensus 56 ------------------~~~~~~~~~~~~l~~~gv~i~vC~~~~~~rgi~~~~l~~g~~~~g~~~l~~~~~~aD~vi 115 (117)
T 1jx7_A 56 ------------------GEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVL 115 (117)
T ss_dssp ------------------SSSCCHHHHHHHHHHTTCCEEEEHHHHHHTTCTTSCBCTTEEEECHHHHHHHTTTCSEEE
T ss_pred ------------------CCCCCHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHCCCCCEECCHHHHHHHHHHCCEEE
T ss_conf ------------------532169999999998799899869999883998122346737759999999998569688
No 3
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=99.54 E-value=3.8e-14 Score=107.79 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=94.6
Q ss_pred CCEEEEEEECCH--HHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 735799860988--888899999999986189448987412366551221112233332100001246765002254435
Q T0517 4 KKMNLLLFSGDY--DKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 4 kkl~II~~sG~~--dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
||++||++|+-+ ++++.++-+|.++++.|.+|.|||+..|+..++|+..+.
T Consensus 2 kkv~ii~~~~P~~~~~~~~al~~Ala~~a~~~~V~vff~~dGV~~l~~~~~~~--------------------------- 54 (119)
T 2d1p_B 2 KRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQKPD--------------------------- 54 (119)
T ss_dssp CCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGGGGGCTTCCGG---------------------------
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCC---------------------------
T ss_conf 77999966899886789999999999984799779999345899872258865---------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CEEEEECCHHHHHCCCHHH-CCCCCEEECHHHHHHHHHCCCCEE
Q ss_conf 701345899999998568997899999998769-8998822016552788667-367640512889999874588243
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKE-VKFYACQLSVEIMGFKKEE-LFPEVQIMDVKEYLKNALESDLQL 157 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~G-vk~~aC~msm~l~gi~~ed-LidgVei~Ga~tFl~~A~~a~v~L 157 (159)
..+.+++..+++.....| .++|+|+.+++..|++++| +++++++++..++.+...++|.+|
T Consensus 55 ---------------~~~~~~l~~~l~~L~~~~~~~i~vc~~sl~~rgi~~~~~l~~~~~~~~~~~l~~li~~ad~Vi 117 (119)
T 2d1p_B 55 ---------------AVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLEADALRRELANYDVIL 117 (119)
T ss_dssp ---------------GGTCCCCGGGGHHHHHTTCCCEEEEHHHHHHTTCCTTCCCSSCCEEECHHHHHHHHTTCSEEE
T ss_pred ---------------CCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHCCEEE
T ss_conf ---------------445778899999998769976998689898769985445656878939999999998489898
No 4
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=99.28 E-value=1.6e-11 Score=91.37 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=94.4
Q ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 7735799860988--88889999999998618944898741236655122111223333210000124676500225443
Q T0517 3 NKKMNLLLFSGDY--DKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSK 80 (159)
Q Consensus 3 ~kkl~II~~sG~~--dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~ 80 (159)
-||+.||++++-| .+++.++-+|.++++.|.+|.|||..+|+..++++..+.
T Consensus 5 mkk~l~ii~~aPy~s~~a~~al~~A~aa~~~~~~V~vff~~dGV~~l~~~q~p~-------------------------- 58 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVYQLTRGQDTK-------------------------- 58 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGGGGBSCCCCG--------------------------
T ss_pred HCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCC--------------------------
T ss_conf 247899976899875789999999999983799779999355888855468987--------------------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CEEEEECCHHHHHCCCHHHCCC--------------CCEEECHHH
Q ss_conf 5701345899999998568997899999998769-8998822016552788667367--------------640512889
Q T0517 81 MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKE-VKFYACQLSVEIMGFKKEELFP--------------EVQIMDVKE 145 (159)
Q Consensus 81 ~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~G-vk~~aC~msm~l~gi~~edLid--------------gVei~Ga~t 145 (159)
..+.+++.+.++...+.| .++|+|..+++-.|+.++||++ ++++++...
T Consensus 59 ----------------~~~~~~l~~~l~~l~~~~~~~v~vc~~s~~~RGi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~e 122 (136)
T 2hy5_B 59 ----------------GIGMKNFSPTYRTLGDYEVRRIYVDRDSLEARGLTQDDLVEIAFEDMETEEEFDNIVEVIDSAR 122 (136)
T ss_dssp ----------------GGTCCCCGGGGGGGGGGTCCEEEEEHHHHHHTTCCGGGBCCCCEECTTTCCEESCCEEEECHHH
T ss_pred ----------------CCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECHHH
T ss_conf ----------------6677789999999986699769973999988599877765554321222333468729948999
Q ss_pred HHHHHHCCCCEE
Q ss_conf 999874588243
Q T0517 146 YLKNALESDLQL 157 (159)
Q Consensus 146 Fl~~A~~a~v~L 157 (159)
.-+...++|.+|
T Consensus 123 l~~li~~aD~Vi 134 (136)
T 2hy5_B 123 VSELMNESDAVF 134 (136)
T ss_dssp HHHHHHHCSEEE
T ss_pred HHHHHHHCCEEE
T ss_conf 999999689897
No 5
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=99.22 E-value=1.3e-10 Score=85.78 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEE-EEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 7357998609--88888899999999986189448-98741236655122111223333210000124676500225443
Q T0517 4 KKMNLLLFSG--DYDKALASLIIANAAREMEIEVT-IFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSK 80 (159)
Q Consensus 4 kkl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV~-iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~ 80 (159)
=|.+|+++++ +-++++.+|-+|.+|...|.+|+ |||..+|+...++...+.....
T Consensus 13 Mk~~i~v~~~Py~~~~a~~Al~fA~aal~~gh~V~~VFf~~DGV~~a~~~~~~~~~~~---------------------- 70 (140)
T 2d1p_A 13 MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEF---------------------- 70 (140)
T ss_dssp CEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTTSC----------------------
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCCCCC----------------------
T ss_conf 0799998169988589999999999999689936999981178999874576445553----------------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHH-----------CCCCCEEECHHHHHHH
Q ss_conf 57013458999999985689978999999987698998822016552788667-----------3676405128899998
Q T0517 81 MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEE-----------LFPEVQIMDVKEYLKN 149 (159)
Q Consensus 81 ~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~ed-----------LidgVei~Ga~tFl~~ 149 (159)
.....+.+.+.+.|+++|+|..+.+-.||..++ |.+|++++|.+++.+.
T Consensus 71 --------------------~~~~~~~~l~~~~gv~l~vC~~~a~~RGI~~~~~~~~~~l~~~nl~~gf~i~gl~eL~~~ 130 (140)
T 2d1p_A 71 --------------------DLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLGLASSNLQQGFTLSGLGALAEA 130 (140)
T ss_dssp --------------------CHHHHHHHHHHHHCCEEEEEHHHHHHTTCCCHHHHHHHTCSCCCBCTTEEEECTHHHHHH
T ss_pred --------------------CHHHHHHHHHHHCCCEEEECHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEECCHHHHHHH
T ss_conf --------------------089999999987697799628999983998425566635653224677386489999999
Q ss_pred HHCCCCEE
Q ss_conf 74588243
Q T0517 150 ALESDLQL 157 (159)
Q Consensus 150 A~~a~v~L 157 (159)
..++|-++
T Consensus 131 ~~~aDrVI 138 (140)
T 2d1p_A 131 SLTCDRVV 138 (140)
T ss_dssp HHHSSEEE
T ss_pred HHHCCEEE
T ss_conf 99779467
No 6
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=99.20 E-value=1.6e-10 Score=85.15 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=89.0
Q ss_pred CEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCE-EEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 357998609--8888889999999998618944-8987412366551221112233332100001246765002254435
Q T0517 5 KMNLLLFSG--DYDKALASLIIANAAREMEIEV-TIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 5 kl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV-~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
|++|++++| +.++++.++-+|.+|+..|.+| .|||..+|+...+++..+....
T Consensus 2 k~~i~v~~~P~~~~~a~~al~fA~aal~~gh~V~~vFf~~dGV~~a~~~~~~~~~~------------------------ 57 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDD------------------------ 57 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTS------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHCCCCCCCCC------------------------
T ss_conf 89999827999837899999999999977990799998347889875346765432------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHH-----------CCCCCEEECHHHHHHH
Q ss_conf 7013458999999985689-978999999987698998822016552788667-----------3676405128899998
Q T0517 82 NLGGIGKKMLLEMMKEEKA-PKLSDLLSGARKKEVKFYACQLSVEIMGFKKEE-----------LFPEVQIMDVKEYLKN 149 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v-~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~ed-----------LidgVei~Ga~tFl~~ 149 (159)
.+. +.|.+| +.+.|+++|+|..+++-.||..++ |+++++++|...+.+.
T Consensus 58 ----------------~~~~~~~~~l---~~~~~~~l~vC~~~a~~RGi~~~~~~~~~~~~~~~l~~gf~~~gl~~L~~~ 118 (130)
T 2hy5_A 58 ----------------RHIVNRWAEL---AEQYELDMVVCVAAAQRRGIVDEGEASRNGKDATNIHPKFRISGLGQLVEA 118 (130)
T ss_dssp ----------------CCHHHHHHHH---HHHHTCCEEEEHHHHHHHTCCCHHHHHHHTCSCCCBCTTCEEECTHHHHHH
T ss_pred ----------------CCHHHHHHHH---HHHCCCEEEEEHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHH
T ss_conf ----------------3689999999---971898699758999981999345455514431013676187389999999
Q ss_pred HHCCCCEE
Q ss_conf 74588243
Q T0517 150 ALESDLQL 157 (159)
Q Consensus 150 A~~a~v~L 157 (159)
..++|.++
T Consensus 119 ~~~aDrvI 126 (130)
T 2hy5_A 119 AIQADRLV 126 (130)
T ss_dssp HHHSSEEE
T ss_pred HHHCCEEE
T ss_conf 99689888
No 7
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.114.1.1
Probab=98.66 E-value=4e-07 Score=63.97 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHC--CCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 9877357998609888888999999999861--89448987412366551221112233332100001246765002254
Q T0517 1 MENKKMNLLLFSGDYDKALASLIIANAAREM--EIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 78 (159)
Q Consensus 1 m~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~--g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~ 78 (159)
|-.-|+.+-+.+++.++.-.++--+...... +.++.+-+...|+..|.++
T Consensus 1 ~~~~Kvvf~i~~~d~~~~~~~L~~~~n~~~~~~~~~i~vV~~G~~i~~l~~~---------------------------- 52 (113)
T 1l1s_A 1 MVDYRVVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRD---------------------------- 52 (113)
T ss_dssp --CEEEEEEECCCCHHHHHHHHHHHHHHHHHCSSEEEEEEECGGGGGGGBTT----------------------------
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHC----------------------------
T ss_conf 9846899995599989999999999999851779739999956289998819----------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEE--ECHHHHHHHHHCCC
Q ss_conf 43570134589999999856899789999999876989988220165527886673676405--12889999874588
Q T0517 79 SKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQI--MDVKEYLKNALESD 154 (159)
Q Consensus 79 s~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei--~Ga~tFl~~A~~a~ 154 (159)
+++.+.++...+.||+|++|+.||+-++++++||+|+|++ .|+++..+.-.++-
T Consensus 53 ----------------------~~~~~~i~~L~~~gV~~~aC~~sl~~~~i~~~~L~~~v~~vpsgv~~l~~lQ~~Gy 108 (113)
T 1l1s_A 53 ----------------------SEYSGDVSELTGQGVRFCACSNTLRASGMDGDDLLEGVDVVSSGVGHIVRRQTEGW 108 (113)
T ss_dssp ----------------------CTTHHHHHHHHHTTCEEEEEHHHHHHTTCCGGGBCTTCEEESCHHHHHHHHHHTTC
T ss_pred ----------------------CHHHHHHHHHHHCCCEEEECHHHHHHCCCCHHHCCCCCEEECHHHHHHHHHHHCCC
T ss_conf ----------------------75479999998789989965799988399977859988994349999999997898
No 8
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.46A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.55 E-value=5.5e-07 Score=63.10 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred CCCCEEEEEEECCHHH-HHHHHHHHHHHHHCCC--CEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 8773579986098888-8899999999986189--448987412366551221112233332100001246765002254
Q T0517 2 ENKKMNLLLFSGDYDK-ALASLIIANAAREMEI--EVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 78 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk-~~~~~ilA~~Aaa~g~--eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~ 78 (159)
.++|+.|+.+|++-+. .-.++..|.-+..-|+ ||.+.|-.-|+++++++
T Consensus 6 ~~~k~vv~~~s~d~~~~~~~~l~~a~n~~~~g~~~~V~vV~~Gp~v~~l~~d---------------------------- 57 (117)
T 2fb6_A 6 ANDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVAND---------------------------- 57 (117)
T ss_dssp TTSEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHC----------------------------
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCC----------------------------
T ss_conf 7870899995798799999999999999974998839999988588987429----------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEE--ECHHHHHHHHHCCCCE
Q ss_conf 43570134589999999856899789999999876989988220165527886673676405--1288999987458824
Q T0517 79 SKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQI--MDVKEYLKNALESDLQ 156 (159)
Q Consensus 79 s~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei--~Ga~tFl~~A~~a~v~ 156 (159)
+++.+.++..++.||++.||..+++-+|++++++.+|+++ +|.. ..+...++-..
T Consensus 58 ----------------------~~~~~~i~~l~~~GV~~~AC~n~~~~~gi~~~~~~~gi~vv~~G~~-i~~l~~~Gy~v 114 (117)
T 2fb6_A 58 ----------------------TQVQTEILEMLQSGITIEACQDCCENFGVASIITNLGITVRYMGIP-LTEYLKNGEKI 114 (117)
T ss_dssp ----------------------HHHHHHHHHHHHHTCEEEEEHHHHHHHTCHHHHHHTTCEEECCHHH-HHHHHHTTCEE
T ss_pred ----------------------CHHHHHHHHHHHCCCEEHHHHHHHHHCCCCHHHHHCCCEEEECCHH-HHHHHHCCCEE
T ss_conf ----------------------5589999999997897579799999849977788579938767698-99999879868
Q ss_pred E
Q ss_conf 3
Q T0517 157 L 157 (159)
Q Consensus 157 L 157 (159)
|
T Consensus 115 I 115 (117)
T 2fb6_A 115 L 115 (117)
T ss_dssp E
T ss_pred E
T ss_conf 7
No 9
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.06A {Sulfolobus tokodaii str}
Probab=98.39 E-value=6e-06 Score=56.63 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=70.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHC--CCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHH
Q ss_conf 998609888888999999999861--894489874123665512211122333321000012467650022544357013
Q T0517 8 LLLFSGDYDKALASLIIANAAREM--EIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGG 85 (159)
Q Consensus 8 II~~sG~~dk~~~~~ilA~~Aaa~--g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~~~~g 85 (159)
+|.+=.+.|+.-.++.-+.-.... +.++.|-+...|+..|+++
T Consensus 3 vv~hv~d~~~~~~aL~n~~n~~~~~~~~~I~vV~~G~gi~~l~~~----------------------------------- 47 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVINLYNDIKDAEIEVVLHQSAIKALLKD----------------------------------- 47 (108)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHSTTCEEEEEECGGGGGGGBTT-----------------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHC-----------------------------------
T ss_conf 999859879999999999999722799819999977799999878-----------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEE--ECHHHHHHHHHCCCC
Q ss_conf 4589999999856899789999999876989988220165527886673676405--128899998745882
Q T0517 86 IGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQI--MDVKEYLKNALESDL 155 (159)
Q Consensus 86 ~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei--~Ga~tFl~~A~~a~v 155 (159)
+++.+.++...+.||+|++|+.||+-+|++++||+|+|++ .|+++..+.-.++-.
T Consensus 48 ---------------~~~~~~i~~L~~~gV~~~~C~nal~~~~i~~~~l~~~v~~vpsg~~~l~~lq~~Gy~ 104 (108)
T 2pd2_A 48 ---------------SDTRSIIEDLIKKNILIVGCENSIRSQNLSHDQLIPGIKIVTSGVGEIVRKQSEGWI 104 (108)
T ss_dssp ---------------CTTHHHHHHHHHTTCEEEEEHHHHHHTTCCGGGBCTTCEEESCHHHHHHHHHHTTCE
T ss_pred ---------------CHHHHHHHHHHHCCCEEEECHHHHHHCCCCHHHCCCCCEEECHHHHHHHHHHHCCCE
T ss_conf ---------------813799999997899899648999884999789399988844489999999988986
No 10
>2hy5_C DSRH; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.2 PDB: 2hyb_C
Probab=95.20 E-value=0.17 Score=28.86 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=40.8
Q ss_pred HHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCCE
Q ss_conf 8769899882201655278866736764051288999987458824
Q T0517 111 RKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQ 156 (159)
Q Consensus 111 ~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v~ 156 (159)
...|+++|+|+.-++..|+..++++++|++++-..|.+...+.+-+
T Consensus 53 ~~~~~~vy~L~~Dl~ARGl~~~~l~~~v~~vdy~~fV~Lt~~~~~~ 98 (102)
T 2hy5_C 53 ALGKLKLYVLGPDLKARGFSDERVIPGISVVDYAGFVDLTTECDTV 98 (102)
T ss_dssp HTTTSEEEEEHHHHHHTTCCGGGBCTTCEEECHHHHHHHHHHSSEE
T ss_pred HCCCCEEEEEHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCC
T ss_conf 2469759987776987299843367883798899999999965881
No 11
>2d1p_C TUSB, hypothetical protein YHEL; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.2
Probab=81.93 E-value=1.8 Score=22.32 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=38.8
Q ss_pred HHHHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCCE
Q ss_conf 998769899882201655278866736764051288999987458824
Q T0517 109 GARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQ 156 (159)
Q Consensus 109 ~a~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v~ 156 (159)
...+.++++|+++-=.+..|++ +.+.+++++++-..|.+.+.+.+-+
T Consensus 46 ~l~~~~~~~yaL~~Dl~ARGl~-~~~~~~v~~IdY~~fV~Lt~~h~~~ 92 (95)
T 2d1p_C 46 SLRNAPIKVYALNEDLIARGLT-GQISNDIILIDYTDFVRLTVKHPSQ 92 (95)
T ss_dssp HHHTSSSEEEEEHHHHHHTTCT-TSBCTTSEEECHHHHHHHHHHCSCE
T ss_pred HHHHCCCEEEEEHHHHHHCCCC-CCCCCCCEEECHHHHHHHHHHCCCC
T ss_conf 9982898599974159873986-3358884787799999999861785
No 12
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=71.75 E-value=5.2 Score=19.51 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=31.6
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9877357998609888888999999999861894489874
Q T0517 1 MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 40 (159)
Q Consensus 1 m~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfT 40 (159)
|+++|+.||-+|-+-.-..-+=.++.++.+.|.||.++..
T Consensus 3 ms~~KilIvy~S~~GnT~~lA~~i~~g~~~~g~ev~~~~~ 42 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTV 42 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8988289999489818999999999988544976898743
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=69.40 E-value=5.3 Score=19.44 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
Q ss_conf 98773579986098888889999999998618944898741236
Q T0517 1 MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGL 44 (159)
Q Consensus 1 m~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl 44 (159)
|++|| +++++||-.|-...+. -+...|.+|..++-.+|.
T Consensus 1 m~~~K-avvl~SGG~DS~~~~~----~l~~~g~~v~~v~~~~g~ 39 (219)
T 3bl5_A 1 MKKEK-AIVVFSGGQDSTTCLL----WALKEFEEVETVTFHYNQ 39 (219)
T ss_dssp --CCE-EEEECCSSHHHHHHHH----HHHHHCSEEEEEEEESSC
T ss_pred CCCCE-EEEEECCCHHHHHHHH----HHHHCCCEEEEEEEECCC
T ss_conf 99873-9999638589999999----999839918999987898
No 14
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=51.84 E-value=12 Score=17.25 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 877357998609888888999999999861894489874
Q T0517 2 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 40 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfT 40 (159)
++||++||-+|.+-.---.+=.+|.++...|.||.+|..
T Consensus 255 ~~~ki~IvY~S~~GnT~~~A~~i~~g~~~~g~~v~~~~~ 293 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEM 293 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 685499999889876999999999999857984899983
No 15
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ...
Probab=50.04 E-value=13 Score=17.07 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=25.4
Q ss_pred CCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9877357998609--8888889999999998618944898
Q T0517 1 MENKKMNLLLFSG--DYDKALASLIIANAAREMEIEVTIF 38 (159)
Q Consensus 1 m~~kkl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV~iF 38 (159)
|.+||+.|+++.| ++|-.+|--++- .-|++|++.
T Consensus 1 m~~kkili~l~dGfe~~E~~~p~~~L~----~ag~~v~v~ 36 (197)
T 2rk3_A 1 MASKRALVILAKGAEEMETVIPVDVMR----RAGIKVTVA 36 (197)
T ss_dssp -CCCEEEEEECTTCCHHHHHHHHHHHH----HTTCEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH----HCCCEEEEE
T ss_conf 998999999589978999999999999----789989999
No 16
>1x9a_A Hypothetical protein TM0979; structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG, OCSP; NMR {Thermotoga maritima} SCOP: c.114.1.2
Probab=40.58 E-value=18 Score=16.16 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCC
Q ss_conf 6989988220165527886673676405128899998745882
Q T0517 113 KEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDL 155 (159)
Q Consensus 113 ~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v 155 (159)
.++++|+|+--++..|++.. ++.++.++-..|.+.+++.+-
T Consensus 64 ~~~~vyaL~eDl~ARGL~~~--i~~i~lIdY~~FV~Lte~h~k 104 (107)
T 1x9a_A 64 TPAKVYAIKDDFLARGYSEE--DSKVPLITYSEFIDLLEGEEK 104 (107)
T ss_dssp CSSEEEEEHHHHHHTTCCGG--GCSSCEECHHHHHHHHHCSSC
T ss_pred CCCEEEEEHHHHHHCCCCCC--CCCCEEECHHHHHHHHHHCCC
T ss_conf 79779998556985589777--898479779999999985267
No 17
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), structural genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=39.65 E-value=14 Score=16.92 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=54.4
Q ss_pred CCCEEEEEEECC----HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHCC
Q ss_conf 773579986098----8888899999999986189448987412366551221-11223333210000124676500225
Q T0517 3 NKKMNLLLFSGD----YDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPE-KASQEDKSLYEQAFSSLTPREAEELP 77 (159)
Q Consensus 3 ~kkl~II~~sG~----~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~-~~~~~~~~~~~~~~~~~~p~~~~~lp 77 (159)
..++.||.+-|. +|--.++|-.|...-+-+.|..+.+|-+|..++.-+. ..+.... ..+
T Consensus 10 ~~~vliiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~lVv~HD~~l~R~t~~----------------~~~ 73 (234)
T 1o1z_A 10 HHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGL----------------DVK 73 (234)
T ss_dssp CCCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHCE----------------EEE
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCHHHEEECC----------------CCE
T ss_conf 6418999899999999710599999999859898998889916998886064132013212----------------441
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44357013458999999985689978999999987
Q T0517 78 LSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARK 112 (159)
Q Consensus 78 ~s~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e 112 (159)
.+...+.. + +.+...++|+++|+++.+.+
T Consensus 74 v~~~t~~e-----L-~~l~~~~iptL~evl~~~~~ 102 (234)
T 1o1z_A 74 IRDATVSE-----L-KELTDGKITTLKEVFENVSD 102 (234)
T ss_dssp GGGSCHHH-----H-HHHTTTCCCBHHHHHHHSCT
T ss_pred EECCCHHH-----H-HHHCCCCCCCHHHHHHHCCC
T ss_conf 53165344-----4-44303679859999972666
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=33.82 E-value=23 Score=15.49 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHCCC---HHHCCCCC-E-EECHHHHHHHHH
Q ss_conf 78999999987698998822016552788---66736764-0-512889999874
Q T0517 102 KLSDLLSGARKKEVKFYACQLSVEIMGFK---KEELFPEV-Q-IMDVKEYLKNAL 151 (159)
Q Consensus 102 ~~~eLl~~a~e~Gvk~~aC~msm~l~gi~---~edLidgV-e-i~Ga~tFl~~A~ 151 (159)
+..+|+..+.+.||++|+..--+..-.-+ .++++..+ + =.-.-.||....
T Consensus 6 s~~~LL~~l~~~Gi~L~~e~~~Lr~~ap~g~lt~el~~~l~~~K~eiI~~L~~~~ 60 (78)
T 2jug_A 6 SAGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGARHELIALLRQLQ 60 (78)
T ss_dssp SHHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4999999999889889998999889678778999999999985999999998616
No 19
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=31.56 E-value=23 Score=15.47 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=49.2
Q ss_pred EEEEEECC----HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 79986098----8888899999999986189448987412366551221-112233332100001246765002254435
Q T0517 7 NLLLFSGD----YDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPE-KASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 7 ~II~~sG~----~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~-~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
-||.+-|. +|--..+|..|...-+-+.|+.+-+|-+|..++.-+. ..+..... .+.+-+
T Consensus 4 ~iiaHRG~~~~~pENT~~af~~A~~~G~~~iE~DV~lTkDg~lvv~HD~~l~r~t~~~----------------~~v~~~ 67 (250)
T 3ks6_A 4 RIASHRGGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATTDMT----------------GAIVDM 67 (250)
T ss_dssp EEEEETTTHHHHCTTCHHHHHHHHTSSSSEEEEEEEECTTSCEEECSSSBSTTTBSCC----------------SBGGGS
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCCEEECC----------------CEECCC
T ss_conf 7998999999998534999999998598989987899029968997488555412024----------------404339
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 70134589999999856899789999999876989988
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYA 119 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~a 119 (159)
++..+..--++ .=....+|+++|+++.++..++.+..
T Consensus 68 t~~el~~l~~~-~~~~~~iptL~e~l~~~~~~~~~l~i 104 (250)
T 3ks6_A 68 TLAKVKTATIR-YGAGSHPMTLEELCALYVDSHVNFRC 104 (250)
T ss_dssp CHHHHHHCCBT-TSTTCCCEEHHHHHHHHTTCSCEEEE
T ss_pred CHHHHHHHHHH-CCCCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 89999861100-26888789899999997515876314
No 20
>1rhx_A Conserved hypothetical protein TM0979; JCSG, structure determination, DSRH, PSI, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.114.1.2
Probab=29.46 E-value=27 Score=15.04 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=35.0
Q ss_pred HCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCC
Q ss_conf 76989988220165527886673676405128899998745882
Q T0517 112 KKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDL 155 (159)
Q Consensus 112 e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v 155 (159)
..++++|+++--++..|++.. +++++.++-..|.+.+++.+-
T Consensus 43 ~~~~~vy~L~~Dl~ARGl~~~--i~~i~~IdY~~FV~Lt~~h~k 84 (87)
T 1rhx_A 43 ETPAKVYAIKDDFLARGYSEE--DSKVPLITYSEFIDLLEGEEK 84 (87)
T ss_dssp CCSSBCCEEHHHHHTTTCCTT--TCSSCEECHHHHHHHHSSCCS
T ss_pred CCCCEEEEEHHHHHHCCCCCC--CCCCEEECHHHHHHHHHHCCC
T ss_conf 469739987215875188456--788568679999999985167
No 21
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, structural genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=29.01 E-value=23 Score=15.52 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCCEEEEEEECC----HHHHHHHHHHHHHH-HHCCCCEEEEEEHHHHHHHHC
Q ss_conf 8773579986098----88888999999999-861894489874123665512
Q T0517 2 ENKKMNLLLFSGD----YDKALASLIIANAA-REMEIEVTIFCAFWGLLLLRD 49 (159)
Q Consensus 2 ~~kkl~II~~sG~----~dk~~~~~ilA~~A-aa~g~eV~iFfTf~Gl~~l~K 49 (159)
.++|..||.+-|. +|--.++|..|... -+-+.|..|.+|-+|..++.-
T Consensus 20 ~~~~~~iIaHRG~~~~~pENTl~af~~A~~~~Gad~iE~DV~lT~Dg~lVv~H 72 (287)
T 2oog_A 20 TNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMH 72 (287)
T ss_dssp TSCSSEEEETTTTTTTSCSSSHHHHHHHHHTSCCSEEEEEEEECTTCCEEECS
T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECC
T ss_conf 88872389889989999730599999999974999899878991799889768
No 22
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.67 E-value=28 Score=14.95 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=32.3
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEH
Q ss_conf 8773579986098888889999999998618944898741
Q T0517 2 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAF 41 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfTf 41 (159)
.+||+.||-+|-+-.--.-|=.+|.++...|.+|.++-.-
T Consensus 3 ~~kkV~IvY~S~tGnTe~~A~~Ia~gl~~~gv~v~~~~~~ 42 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8888999999999729999999999998529923754236
No 23
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A*
Probab=26.42 E-value=31 Score=14.70 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=32.1
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 877357998609888888999999999861894489874
Q T0517 2 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 40 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfT 40 (159)
.++|+.||-.|.+-.--..|-.++.++...|.+|.++-.
T Consensus 255 ~~~kv~Ivy~S~~GnT~~~A~~i~~g~~~~g~~v~~~~~ 293 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCL 293 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 577287999407655999999999998637995899993
No 24
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiative, PSI-2; 2.81A {Galdieria sulphuraria}
Probab=24.62 E-value=33 Score=14.49 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=51.7
Q ss_pred EEEEECC------HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 9986098------8888899999999986189448987412366551221-11223333210000124676500225443
Q T0517 8 LLLFSGD------YDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPE-KASQEDKSLYEQAFSSLTPREAEELPLSK 80 (159)
Q Consensus 8 II~~sG~------~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~-~~~~~~~~~~~~~~~~~~p~~~~~lp~s~ 80 (159)
||.+-|. +|--.++|..|...-+-+.|..+.+|-+|..++.-+. ..++...+.+. .+.+.
T Consensus 9 iiaHRG~~~~~~~PENTl~af~~A~~~G~~~iE~DV~~TkDg~~vv~HD~~d~~l~r~t~~~-------------g~i~~ 75 (258)
T 2o55_A 9 IVGHRGVGKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKDGT-------------SRIGD 75 (258)
T ss_dssp EEEETTTTTSTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECCCSTTSBCTTSTTTT-------------CBGGG
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCCCEEEECCC-------------CCCCC
T ss_conf 89888988889997328999999998698989987799228988984575123430331254-------------41022
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC--CEEE
Q ss_conf 5701345899999998568997899999998769--8998
Q T0517 81 MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKE--VKFY 118 (159)
Q Consensus 81 ~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~G--vk~~ 118 (159)
+.+..+.+-- .-....+|+++|+++.+.+.+ +.+.
T Consensus 76 ~t~~el~~l~---~~~~~~iptL~evl~~~~~~~~~~~l~ 112 (258)
T 2o55_A 76 LSLEELKRLD---VGGGHTIPSLEELFVAIEEQKFNLKLN 112 (258)
T ss_dssp SCHHHHTTCB---SSSSCBCCBHHHHHHHHHHSCSCCEEE
T ss_pred CCHHHHHHHH---CCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 6799998743---188777897899999757634684651
No 25
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=23.89 E-value=18 Score=16.21 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCC
Q ss_conf 97899999998769899882201655278866736764
Q T0517 101 PKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEV 138 (159)
Q Consensus 101 ~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgV 138 (159)
.++.||.+.|+++|++-+ -+++|.|||..+
T Consensus 9 k~l~EL~eiAk~lgIe~~--------~~m~K~eLI~~I 38 (130)
T 1a62_A 9 TPVSELITLGENMGLENL--------ARMRKQDIIFAI 38 (130)
T ss_dssp SCHHHHHHHHHTTTCCCC--------TTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCC--------CCCCHHHHHHHH
T ss_conf 999999999998599874--------435367899999
No 26
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=22.68 E-value=36 Score=14.26 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=25.0
Q ss_pred CCCCCEEEEEEECCHHH---HHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf 98773579986098888---889999999998618-94489874
Q T0517 1 MENKKMNLLLFSGDYDK---ALASLIIANAAREME-IEVTIFCA 40 (159)
Q Consensus 1 m~~kkl~II~~sG~~dk---~~~~~ilA~~Aaa~g-~eV~iFfT 40 (159)
|.|||++||+--.+.|+ ++.+-.++.+..+.| ++|.++..
T Consensus 1 M~kkkv~vl~GG~s~E~~vSl~Sg~~i~~aL~~~g~y~v~~v~i 44 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAI 44 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 99989999818896641618999999999876708914999997
No 27
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, zinc, metallo- enzyme, structure 2 function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=22.57 E-value=36 Score=14.24 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHCCCEEEE
Q ss_conf 789999999876989988
Q T0517 102 KLSDLLSGARKKEVKFYA 119 (159)
Q Consensus 102 ~~~eLl~~a~e~Gvk~~a 119 (159)
...++++.+++.|+.+.+
T Consensus 172 ~~~~~~~~~~~~g~~~v~ 189 (245)
T 1m65_A 172 NCREVAAAVRDAGGWVAL 189 (245)
T ss_dssp CHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHCCCCEEE
T ss_conf 699999999986995999
No 28
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=22.29 E-value=37 Score=14.21 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHCCCEEEEECC
Q ss_conf 9789999999876989988220
Q T0517 101 PKLSDLLSGARKKEVKFYACQL 122 (159)
Q Consensus 101 ~~~~eLl~~a~e~Gvk~~aC~m 122 (159)
|.+.|+|+..++.|+++..|+-
T Consensus 71 pgv~e~L~~Lk~~Gi~lai~S~ 92 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGVPGAAASR 92 (187)
T ss_dssp TTHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEECC
T ss_conf 5599999999988977995067
No 29
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison,; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=21.78 E-value=38 Score=14.15 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHC------------CCC-CHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 70134589999999856------------899-78999999987698998822016
Q T0517 82 NLGGIGKKMLLEMMKEE------------KAP-KLSDLLSGARKKEVKFYACQLSV 124 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~------------~v~-~~~eLl~~a~e~Gvk~~aC~msm 124 (159)
.++|.....++...+.. |+| .+.+.++.+.+.|+-++.|+.+.
T Consensus 219 ~~pg~~~~~l~~~~~~~~~GiVi~g~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sqc~ 274 (326)
T 1nns_A 219 NYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVP 274 (326)
T ss_dssp CCTTCCSHHHHHHHHTTCSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 26999989999998678978999857899899899999999985799899980178
No 30
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=21.57 E-value=38 Score=14.12 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9877357998609--88888899999999986189448987
Q T0517 1 MENKKMNLLLFSG--DYDKALASLIIANAAREMEIEVTIFC 39 (159)
Q Consensus 1 m~~kkl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV~iFf 39 (159)
|.+||++|++..| ++|=.+|--++ ...|++|.+.-
T Consensus 7 ~~~KkI~il~~~gf~~~E~~~p~~~l----~~ag~~v~~vs 43 (190)
T 2vrn_A 7 LTGKKIAILAADGVEEIELTSPRAAI----EAAGGTTELIS 43 (190)
T ss_dssp CTTCEEEEECCTTCBHHHHHHHHHHH----HHTTCEEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH----HHCCCEEEEEE
T ss_conf 89999999927996799999999999----97889999996
No 31
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=21.15 E-value=16 Score=16.55 Aligned_cols=28 Identities=11% Similarity=0.098 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHCC
Q ss_conf 7899999998769899882201655278
Q T0517 102 KLSDLLSGARKKEVKFYACQLSVEIMGF 129 (159)
Q Consensus 102 ~~~eLl~~a~e~Gvk~~aC~msm~l~gi 129 (159)
.+..|++.|+++||+=+.|=.+.|+++=
T Consensus 61 NI~~FL~A~r~lGV~~~~lF~T~DL~e~ 88 (108)
T 1h67_A 61 NIGNFLRAIKHYGVKPHDIFEANDLFEN 88 (108)
T ss_dssp HHHHHHHHHHHHTSCGGGSCCHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHCCHHHHCC
T ss_conf 3999999999919988885201546405
No 32
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=20.10 E-value=41 Score=13.93 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=32.9
Q ss_pred CCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCCEEEEEEH
Q ss_conf 77357998609-8888889999999998618944898741
Q T0517 3 NKKMNLLLFSG-DYDKALASLIIANAAREMEIEVTIFCAF 41 (159)
Q Consensus 3 ~kkl~II~~sG-~~dk~~~~~ilA~~Aaa~g~eV~iFfTf 41 (159)
.+|+.|+.+.+ |.|-+-.++.++......|.+|.++..-
T Consensus 21 ~~kI~I~~H~~~D~Dgi~Sa~aL~~~l~~~g~~~~i~~~~ 60 (343)
T 3dma_A 21 ADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPN 60 (343)
T ss_dssp CSEEEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9959999689985689999999999999769988999799
Done!