Query T0517 YP_755085.1, Syntrophomonas wolfei str. Goettingen, 159 residues
Match_columns 159
No_of_seqs 106 out of 278
Neff 6.2
Searched_HMMs 15564
Date Fri May 21 18:04:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0517.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0517.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jx7a_ c.114.1.1 (A:) Hypothe 99.6 9.1E-16 5.9E-20 116.9 11.1 110 4-157 2-115 (117)
2 d1jx7a_ c.114.1.1 (A:) Hypothe 99.6 2.8E-15 1.8E-19 113.9 11.1 110 4-157 2-115 (117)
3 d2d1pb1 c.114.1.1 (B:1-119) tR 99.5 4.9E-14 3.2E-18 106.1 10.1 113 4-158 2-118 (119)
4 d2hy5b1 c.114.1.1 (B:205-336) 99.3 4.5E-12 2.9E-16 93.8 9.1 112 4-157 2-130 (132)
5 d2d1pa1 c.114.1.1 (A:1-128) tR 99.3 1.9E-11 1.2E-15 90.0 11.3 111 5-157 2-126 (128)
6 d2hy5a1 c.114.1.1 (A:1-130) Su 99.2 4.9E-11 3.2E-15 87.4 10.9 110 5-157 2-126 (130)
7 d1l1sa_ c.114.1.1 (A:) Hypothe 98.5 1.2E-06 7.5E-11 60.1 11.8 101 4-154 2-106 (111)
8 d2hy5c1 c.114.1.2 (C:402-502) 96.7 0.0083 5.3E-07 36.0 9.3 95 6-157 2-98 (101)
9 d2d1pc1 c.114.1.2 (C:1-95) tRN 83.1 0.92 5.9E-05 23.2 4.5 48 107-155 44-91 (95)
10 d1o1za_ c.1.18.3 (A:) Hypothet 40.1 12 0.00074 16.4 2.9 91 4-117 3-98 (226)
11 d2ebfx2 c.150.1.2 (X:875-1093) 33.7 16 0.001 15.5 4.1 34 87-120 92-125 (219)
12 d1vmea1 c.23.5.1 (A:251-398) R 30.3 18 0.0012 15.1 5.2 39 2-40 2-40 (148)
13 d1e5da1 c.23.5.1 (A:251-402) R 30.0 18 0.0012 15.1 4.8 38 2-39 1-38 (152)
14 d1f52a1 d.15.9.1 (A:1-100) Glu 30.0 18 0.0012 15.1 2.6 29 102-131 1-29 (100)
15 d1x9aa_ c.114.1.2 (A:) Hypothe 27.6 20 0.0013 14.8 4.7 41 113-155 44-84 (87)
16 d1a62a1 a.140.3.1 (A:1-47) Rho 27.4 9.6 0.00062 16.9 0.7 31 98-136 6-36 (47)
17 d1a62a1 a.140.3.1 (A:1-47) Rho 24.9 11 0.00073 16.4 0.7 30 99-136 7-36 (47)
18 d2bdua1 c.108.1.21 (A:7-297) C 21.8 26 0.0017 14.1 2.7 40 87-126 121-163 (291)
19 d1u7pa_ c.108.1.17 (A:) Magnes 21.0 27 0.0017 14.0 2.7 22 101-122 49-70 (164)
20 d1szpa1 a.60.4.1 (A:81-144) DN 20.9 27 0.0017 14.0 2.1 35 76-111 1-35 (64)
No 1
>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}
Probab=99.64 E-value=9.1e-16 Score=116.94 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=98.6
Q ss_pred CCEEEEEEEC--CHHHHHHHHHHHHHHHHCCC--CEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 7357998609--88888899999999986189--4489874123665512211122333321000012467650022544
Q T0517 4 KKMNLLLFSG--DYDKALASLIIANAAREMEI--EVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLS 79 (159)
Q Consensus 4 kkl~II~~sG--~~dk~~~~~ilA~~Aaa~g~--eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s 79 (159)
||++||++++ +.++++.+|-+|.++++.|. ||.|||+..|+.+++|+..+.
T Consensus 2 kk~~ii~~~~P~~~~~~~~al~~A~a~~~~g~~~eV~ifl~~dgV~~~~~~~~~~------------------------- 56 (117)
T d1jx7a_ 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPG------------------------- 56 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCCS-------------------------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCC-------------------------
T ss_conf 4478887369998246788999999999728995079887432267531145666-------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCCEE
Q ss_conf 357013458999999985689978999999987698998822016552788667367640512889999874588243
Q T0517 80 KMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQL 157 (159)
Q Consensus 80 ~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v~L 157 (159)
+.+++.++++++.+.|+++|+|+.+++.+|++++||++|++++|..++.+.+.++|.++
T Consensus 57 -------------------~~~~l~~~~~~l~~~gv~i~~C~~~~~~rGi~~~~l~~g~~~~~~~~l~~~~~~~d~Vi 115 (117)
T d1jx7a_ 57 -------------------EGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVL 115 (117)
T ss_dssp -------------------SSCCHHHHHHHHHHTTCCEEEEHHHHHHTTCTTSCBCTTEEEECHHHHHHHTTTCSEEE
T ss_pred -------------------CCCCHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHCCCEE
T ss_conf -------------------67377899999997599699965478640798011137840439899999997236523
No 2
>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}
Probab=99.62 E-value=2.8e-15 Score=113.92 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=96.9
Q ss_pred CCEEEEEEECC--HHHHHHHHHHHHHHHHCCC--CEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 73579986098--8888899999999986189--4489874123665512211122333321000012467650022544
Q T0517 4 KKMNLLLFSGD--YDKALASLIIANAAREMEI--EVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLS 79 (159)
Q Consensus 4 kkl~II~~sG~--~dk~~~~~ilA~~Aaa~g~--eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s 79 (159)
+|+.||++++- .+|++.++-+|.++++.|. ||.|||+..|+.+.+++..+
T Consensus 2 ~k~~ii~~~~P~~~~~~~~al~~A~a~~~~~~~~eV~vff~~dgV~~~~~~~~~-------------------------- 55 (117)
T d1jx7a_ 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKP-------------------------- 55 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCC--------------------------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCC--------------------------
T ss_conf 679999847998828999999999999963889737999966267775155786--------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCCEE
Q ss_conf 357013458999999985689978999999987698998822016552788667367640512889999874588243
Q T0517 80 KMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQL 157 (159)
Q Consensus 80 ~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v~L 157 (159)
.+.+++.++++++.+.|+++|+|..+++-+|++++||+++++++|..++.+.+.++|.++
T Consensus 56 ------------------~~~~~~~~~l~~l~~~gv~v~vC~~~~~~rGi~~~~l~~g~~i~~~~~l~~~~~~ad~Vi 115 (117)
T d1jx7a_ 56 ------------------GEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVL 115 (117)
T ss_dssp ------------------SSSCCHHHHHHHHHHTTCCEEEEHHHHHHTTCTTSCBCTTEEEECHHHHHHHTTTCSEEE
T ss_pred ------------------CCCCCHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHHHCCCEEECCHHHHHHHHHHCCEEE
T ss_conf ------------------443558999999997798899977889884887043203506649999999998579698
No 3
>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein C, TusC {Escherichia coli [TaxId: 562]}
Probab=99.52 E-value=4.9e-14 Score=106.13 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 7357998609--88888899999999986189448987412366551221112233332100001246765002254435
Q T0517 4 KKMNLLLFSG--DYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 4 kkl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
||++||++|+ +-++++.++-+|.++++.|.+|.|||+..|+..++|+..+.
T Consensus 2 kkv~ii~~~~P~~~~~~~~al~~Ala~a~~~~~V~iff~~dGV~~l~~~~~p~--------------------------- 54 (119)
T d2d1pb1 2 KRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQKPD--------------------------- 54 (119)
T ss_dssp CCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGGGGGCTTCCGG---------------------------
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCC---------------------------
T ss_conf 67999975899986789999999999984799779999433899872378864---------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCHHHHHCCCHH-HCCCCCEEECHHHHHHHHHCCCCEEE
Q ss_conf 7013458999999985689978999999987698-99882201655278866-73676405128899998745882430
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEV-KFYACQLSVEIMGFKKE-ELFPEVQIMDVKEYLKNALESDLQLF 158 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gv-k~~aC~msm~l~gi~~e-dLidgVei~Ga~tFl~~A~~a~v~LF 158 (159)
..+.+++.++++.....|+ ++|+|+.+++-+|+++| +|+++|++++..++.+...++|.+|.
T Consensus 55 ---------------~~~~~~l~~~~~~l~~~~~~~i~vc~~sl~~rgi~~e~~l~~~v~~~~~~~l~~li~~aD~Vl~ 118 (119)
T d2d1pb1 55 ---------------AVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLEADALRRELANYDVILR 118 (119)
T ss_dssp ---------------GGTCCCCGGGGHHHHHTTCCCEEEEHHHHHHTTCCTTCCCSSCCEEECHHHHHHHHTTCSEEEE
T ss_pred ---------------CCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHCCEEEE
T ss_conf ---------------3457888999999986799669972875988599965556567589599999999985898983
No 4
>d2hy5b1 c.114.1.1 (B:205-336) Intracellular sulfur oxidation protein DsrF {Chromatium vinosum [TaxId: 1049]}
Probab=99.32 E-value=4.5e-12 Score=93.85 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCEEEEEEECC--HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 73579986098--8888899999999986189448987412366551221112233332100001246765002254435
Q T0517 4 KKMNLLLFSGD--YDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 4 kkl~II~~sG~--~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
||+.||++++- ..+++.++-+|.++++.|.+|.|||..+|+..++++..+.
T Consensus 2 kk~l~ii~~aPy~s~~a~~al~~A~aa~~~~~~v~vff~~dGV~~l~~~q~p~--------------------------- 54 (132)
T d2hy5b1 2 KKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVYQLTRGQDTK--------------------------- 54 (132)
T ss_dssp CEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGGGGBSCCCCG---------------------------
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCC---------------------------
T ss_conf 67999966899986799999999999970799779999542988854468987---------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCHHHHHCCCHHHCC--------------CCCEEECHHHH
Q ss_conf 7013458999999985689978999999987698-99882201655278866736--------------76405128899
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEV-KFYACQLSVEIMGFKKEELF--------------PEVQIMDVKEY 146 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gv-k~~aC~msm~l~gi~~edLi--------------dgVei~Ga~tF 146 (159)
..+.+++.++++.....|+ ++|+|+.+++-.|+.++||+ +++++++....
T Consensus 55 ---------------~~~~~~l~~~l~~l~~~~v~~v~vc~~s~~~rGl~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~l 119 (132)
T d2hy5b1 55 ---------------GIGMKNFSPTYRTLGDYEVRRIYVDRDSLEARGLTQDDLVEIAFEDMETEEEFDNIVEVIDSARV 119 (132)
T ss_dssp ---------------GGTCCCCGGGGGGGGGGTCCEEEEEHHHHHHTTCCGGGBCCCCEECTTTCCEESCCEEEECHHHH
T ss_pred ---------------CCCCCCHHHHHHHHHHCCCCEEEECHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECHHHH
T ss_conf ---------------66887899999999865985377619999984998788655433102233345687299589999
Q ss_pred HHHHHCCCCEE
Q ss_conf 99874588243
Q T0517 147 LKNALESDLQL 157 (159)
Q Consensus 147 l~~A~~a~v~L 157 (159)
.+...++|.+|
T Consensus 120 ~~li~~aD~Vl 130 (132)
T d2hy5b1 120 SELMNESDAVF 130 (132)
T ss_dssp HHHHHHCSEEE
T ss_pred HHHHHHCCEEE
T ss_conf 99999689898
No 5
>d2d1pa1 c.114.1.1 (A:1-128) tRNA 2-thiouridine synthesizing protein D, TusD {Escherichia coli [TaxId: 562]}
Probab=99.30 E-value=1.9e-11 Score=90.01 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=91.0
Q ss_pred CEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCE-EEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 357998609--8888889999999998618944-8987412366551221112233332100001246765002254435
Q T0517 5 KMNLLLFSG--DYDKALASLIIANAAREMEIEV-TIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 5 kl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV-~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
|.+|+++++ +.+++..+|.+|.+|...|.+| .|||..+|+...++...+...
T Consensus 2 k~~i~v~~~P~~~~~a~~A~~fA~aal~~Gh~V~~vF~~~dGV~~a~~~~~~~~~------------------------- 56 (128)
T d2d1pa1 2 RFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASD------------------------- 56 (128)
T ss_dssp EEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTT-------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCCC-------------------------
T ss_conf 7999994699983789999999999985778546899844377776426676667-------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHH-----------CCCCCEEECHHHHHHHH
Q ss_conf 7013458999999985689978999999987698998822016552788667-----------36764051288999987
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEE-----------LFPEVQIMDVKEYLKNA 150 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~ed-----------LidgVei~Ga~tFl~~A 150 (159)
......++.+.+.+.||++|+|..+++-.||..++ |.||++++|..++.+..
T Consensus 57 -----------------~~~~~~~~~~l~~~~gv~l~vC~~~a~~RGi~~~~~~~~~~~~~~~l~~gf~i~gl~~L~e~~ 119 (128)
T d2d1pa1 57 -----------------EFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLGLASSNLQQGFTLSGLGALAEAS 119 (128)
T ss_dssp -----------------SCCHHHHHHHHHHHHCCEEEEEHHHHHHTTCCCHHHHHHHTCSCCCBCTTEEEECTHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEECCHHHHHHHH
T ss_conf -----------------644899999999866983997389998859984155777534311356774862899999999
Q ss_pred HCCCCEE
Q ss_conf 4588243
Q T0517 151 LESDLQL 157 (159)
Q Consensus 151 ~~a~v~L 157 (159)
.++|-++
T Consensus 120 ~~aDrvi 126 (128)
T d2d1pa1 120 LTCDRVV 126 (128)
T ss_dssp HHSSEEE
T ss_pred HHCCEEE
T ss_conf 9769466
No 6
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]}
Probab=99.24 E-value=4.9e-11 Score=87.38 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=88.9
Q ss_pred CEEEEEEEC--CHHHHHHHHHHHHHHHHCCCCE-EEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 357998609--8888889999999998618944-8987412366551221112233332100001246765002254435
Q T0517 5 KMNLLLFSG--DYDKALASLIIANAAREMEIEV-TIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 5 kl~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV-~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
|++|+++++ +.++++.+|-+|.+|++.|.|| .|||..+|+...++...+....
T Consensus 2 k~~i~v~~~P~~~~~a~~al~fA~aal~~gh~V~~vFf~~dGV~~a~~~~~~~~~~------------------------ 57 (130)
T d2hy5a1 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDD------------------------ 57 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTS------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHCCCCCCCCC------------------------
T ss_conf 89999817999848999999999999977992799999653666643013023445------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHCCCEEEEECCHHHHHCCCHHH-----------CCCCCEEECHHHHHHH
Q ss_conf 7013458999999985689978999999-987698998822016552788667-----------3676405128899998
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSG-ARKKEVKFYACQLSVEIMGFKKEE-----------LFPEVQIMDVKEYLKN 149 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~-a~e~Gvk~~aC~msm~l~gi~~ed-----------LidgVei~Ga~tFl~~ 149 (159)
..+.++.+. +.+.|+++|+|..+++-.|+..++ |+++++++|.+++.+.
T Consensus 58 -------------------~~~~~~~~~l~~~~g~~l~vC~~sa~~RGi~~~~~~~~~~~~~~~l~~gf~i~gl~~L~~~ 118 (130)
T d2hy5a1 58 -------------------RHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNGKDATNIHPKFRISGLGQLVEA 118 (130)
T ss_dssp -------------------CCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHTCSCCCBCTTCEEECTHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEECCHHHHHHH
T ss_conf -------------------7889999999983698799749999983998045567753545565777087389999999
Q ss_pred HHCCCCEE
Q ss_conf 74588243
Q T0517 150 ALESDLQL 157 (159)
Q Consensus 150 A~~a~v~L 157 (159)
..++|.++
T Consensus 119 ~~~aDrvI 126 (130)
T d2hy5a1 119 AIQADRLV 126 (130)
T ss_dssp HHHSSEEE
T ss_pred HHHCCEEE
T ss_conf 99789887
No 7
>d1l1sa_ c.114.1.1 (A:) Hypothetical protein MTH1491 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=98.52 E-value=1.2e-06 Score=60.05 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=73.7
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHH--CCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 735799860988888899999999986--189448987412366551221112233332100001246765002254435
Q T0517 4 KKMNLLLFSGDYDKALASLIIANAARE--MEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKM 81 (159)
Q Consensus 4 kkl~II~~sG~~dk~~~~~ilA~~Aaa--~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~ 81 (159)
-|+.+-+.+++.++.-.++--+.-... -+.++.|-+...|+..|.++
T Consensus 2 yKvVf~i~~~d~~~~~~~l~~~~n~~~~~~~~~i~vV~~G~~v~~l~~~------------------------------- 50 (111)
T d1l1sa_ 2 YRVVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRD------------------------------- 50 (111)
T ss_dssp EEEEEEECCCCHHHHHHHHHHHHHHHHHCSSEEEEEEECGGGGGGGBTT-------------------------------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCC-------------------------------
T ss_conf 4799995699989999999999999842889749999955389999819-------------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEE--ECHHHHHHHHHCCC
Q ss_conf 70134589999999856899789999999876989988220165527886673676405--12889999874588
Q T0517 82 NLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQI--MDVKEYLKNALESD 154 (159)
Q Consensus 82 ~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei--~Ga~tFl~~A~~a~ 154 (159)
+++.+.+++..+.||+|++|+.||+-++++++||+++|++ .|+++-.+.-.++-
T Consensus 51 -------------------~~~~~~i~~L~~~gV~~~~C~~sl~~~~i~~~~l~~~v~~vpsgv~~l~~lQ~~Gy 106 (111)
T d1l1sa_ 51 -------------------SEYSGDVSELTGQGVRFCACSNTLRASGMDGDDLLEGVDVVSSGVGHIVRRQTEGW 106 (111)
T ss_dssp -------------------CTTHHHHHHHHHTTCEEEEEHHHHHHTTCCGGGBCTTCEEESCHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHCCCEEEECHHHHHHCCCCHHHCCCCCEEECHHHHHHHHHHHCCC
T ss_conf -------------------84699999999879989964689988299966848888894348999999997898
No 8
>d2hy5c1 c.114.1.2 (C:402-502) DsrH {Chromatium vinosum [TaxId: 1049]}
Probab=96.73 E-value=0.0083 Score=36.00 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=66.5
Q ss_pred EEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 57998609--8888889999999998618944898741236655122111223333210000124676500225443570
Q T0517 6 MNLLLFSG--DYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNL 83 (159)
Q Consensus 6 l~II~~sG--~~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~~~~~~~~~~~~~~~~~~~p~~~~~lp~s~~~~ 83 (159)
|..++.+. +.+++...+-+ .+-+..|||.-+|+-...++.
T Consensus 2 mLh~i~~sP~~~~~l~~~L~~------~~~~D~llLi~DgVy~a~~~~-------------------------------- 43 (101)
T d2hy5c1 2 ILHTVNKSPFERNSLESCLKF------ATEGASVLLFEDGIYAALAGT-------------------------------- 43 (101)
T ss_dssp EEEEECSCTTTCSHHHHHHHH------CCTTCEEEECGGGGGGGBTTS--------------------------------
T ss_pred EEEEECCCCCCCHHHHHHHHH------CCCCCEEEEEHHHHHHHHCCC--------------------------------
T ss_conf 689965799982589999997------289998998663598875289--------------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCCEE
Q ss_conf 13458999999985689978999999987698998822016552788667367640512889999874588243
Q T0517 84 GGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQL 157 (159)
Q Consensus 84 ~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v~L 157 (159)
...+.++.+ ..++++|+|+-.++..|++.++++++++++.-..|.+...+.+-++
T Consensus 44 ------------------~~~~~~~~~-~~~~~vyvl~~Dl~ARGl~~~~l~~~v~~i~y~~fV~Lt~~~~~vi 98 (101)
T d2hy5c1 44 ------------------RVESQVTEA-LGKLKLYVLGPDLKARGFSDERVIPGISVVDYAGFVDLTTECDTVQ 98 (101)
T ss_dssp ------------------TTHHHHHHH-TTTSEEEEEHHHHHHTTCCGGGBCTTCEEECHHHHHHHHHHSSEEE
T ss_pred ------------------CHHHHHHHH-CCCCEEEEEHHHHHHCCCCCHHCCCCCEEECHHHHHHHHHHCCCCC
T ss_conf ------------------558999862-5697599878989873998012478837988999999999768814
No 9
>d2d1pc1 c.114.1.2 (C:1-95) tRNA 2-thiouridine synthesizing protein B, TusB {Escherichia coli [TaxId: 562]}
Probab=83.14 E-value=0.92 Score=23.20 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=39.2
Q ss_pred HHHHHHCCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCC
Q ss_conf 9999876989988220165527886673676405128899998745882
Q T0517 107 LSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDL 155 (159)
Q Consensus 107 l~~a~e~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v 155 (159)
++..++.++++||++.=.+..|++ +.+.+++++++-..|.+.+.+.+-
T Consensus 44 ~~~l~~~~~~vyaL~~Dl~ARGl~-~~~~~~i~~Idy~~fV~Lt~~h~~ 91 (95)
T d2d1pc1 44 LESLRNAPIKVYALNEDLIARGLT-GQISNDIILIDYTDFVRLTVKHPS 91 (95)
T ss_dssp HHHHHTSSSEEEEEHHHHHHTTCT-TSBCTTSEEECHHHHHHHHHHCSC
T ss_pred HHHHHCCCCEEEEEHHHHHHCCCC-CCCCCCCEEECHHHHHHHHHHCCC
T ss_conf 999861797599974159873997-446888478779999999996179
No 10
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}
Probab=40.14 E-value=12 Score=16.36 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 7357998609----88888899999999986189448987412366551221-112233332100001246765002254
Q T0517 4 KKMNLLLFSG----DYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPE-KASQEDKSLYEQAFSSLTPREAEELPL 78 (159)
Q Consensus 4 kkl~II~~sG----~~dk~~~~~ilA~~Aaa~g~eV~iFfTf~Gl~~l~K~~-~~~~~~~~~~~~~~~~~~p~~~~~lp~ 78 (159)
.+..||.+-| -.|--.++|-.|...-+-+.|..+.+|-+|..++--+. ..+.... ..+.
T Consensus 3 ~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~~----------------~~~i 66 (226)
T d1o1za_ 3 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGL----------------DVKI 66 (226)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHCE----------------EEEG
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCEEEEEECC----------------CCEE
T ss_conf 999899889999999731299999999859898998889805997886046404554113----------------3135
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEE
Q ss_conf 435701345899999998568997899999998769899
Q T0517 79 SKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKF 117 (159)
Q Consensus 79 s~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~ 117 (159)
+.+.+..+ +.+...++|+++|+++.+.+ .+.+
T Consensus 67 ~~~t~~el------~~l~~~~iptL~evl~~~~~-~~~l 98 (226)
T d1o1za_ 67 RDATVSEL------KELTDGKITTLKEVFENVSD-DKII 98 (226)
T ss_dssp GGSCHHHH------HHHTTTCCCBHHHHHHHSCT-TSEE
T ss_pred EECCHHHH------HHHHHHCCHHHHHHHHHHHC-CCCC
T ss_conf 30453443------34443200118999997522-3211
No 11
>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=33.65 E-value=16 Score=15.47 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 5899999998568997899999998769899882
Q T0517 87 GKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAC 120 (159)
Q Consensus 87 ~~~~~~~~m~~~~v~~~~eLl~~a~e~Gvk~~aC 120 (159)
...|++...+..+.-.+..|++.|++.|+|+.|-
T Consensus 92 L~a~Lk~l~~~d~~gaf~~Li~~Ar~ngikI~aL 125 (219)
T d2ebfx2 92 LDAMLFNLDKGDINGAFRKLLQSAKDNNIKFRAI 125 (219)
T ss_dssp HHHHHHHHTTTCSSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7899998626651016999999999879679980
No 12
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.26 E-value=18 Score=15.12 Aligned_cols=39 Identities=8% Similarity=-0.080 Sum_probs=34.1
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 877357998609888888999999999861894489874
Q T0517 2 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 40 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFfT 40 (159)
+++|+.||-.|.+-.--..|-.++....+.|.+|.++-.
T Consensus 2 ~~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~ 40 (148)
T d1vmea1 2 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKF 40 (148)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 988899999998818999999999999867996999964
No 13
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=29.98 E-value=18 Score=15.09 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=31.5
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87735799860988888899999999986189448987
Q T0517 2 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFC 39 (159)
Q Consensus 2 ~~kkl~II~~sG~~dk~~~~~ilA~~Aaa~g~eV~iFf 39 (159)
.++|+.||-.|.+-.--..+-.++.++...|.+|.++-
T Consensus 1 p~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~ 38 (152)
T d1e5da1 1 PTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMW 38 (152)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99869999999880899999999999865797799830
No 14
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.97 E-value=18 Score=15.09 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHCCCH
Q ss_conf 789999999876989988220165527886
Q T0517 102 KLSDLLSGARKKEVKFYACQLSVEIMGFKK 131 (159)
Q Consensus 102 ~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~ 131 (159)
+.+|+++..++.+|++.-|+.+ |+.|.-+
T Consensus 1 s~e~i~~~i~~~~I~~V~~~F~-D~~G~~~ 29 (100)
T d1f52a1 1 SAEHVLTMLNEHEVKFVDLRFT-DTKGKEQ 29 (100)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEE-CTTSCEE
T ss_pred CHHHHHHHHHHCCCEEEEEEEE-CCCCCEE
T ss_conf 9899999999889959999998-7998666
No 15
>d1x9aa_ c.114.1.2 (A:) Hypothetical protein TM0979 {Thermotoga maritima [TaxId: 2336]}
Probab=27.61 E-value=20 Score=14.83 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=34.7
Q ss_pred CCCEEEEECCHHHHHCCCHHHCCCCCEEECHHHHHHHHHCCCC
Q ss_conf 6989988220165527886673676405128899998745882
Q T0517 113 KEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDL 155 (159)
Q Consensus 113 ~Gvk~~aC~msm~l~gi~~edLidgVei~Ga~tFl~~A~~a~v 155 (159)
.++++|+++--++..|++.. +++++.++-..|.+.+++.+-
T Consensus 44 ~~~~vyvL~~Dl~ARGl~~~--i~~v~~IdY~~FV~Lt~~h~k 84 (87)
T d1x9aa_ 44 TPAKVYAIKDDFLARGYSEE--DSKVPLITYSEFIDLLEGEEK 84 (87)
T ss_dssp CSSEEEEEHHHHHHTTCCGG--GCSSCEECHHHHHHHHHCSSC
T ss_pred CCCEEEEEHHHHHHCCCCCC--CCCCEEECHHHHHHHHHHCCC
T ss_conf 78769998425875298666--778448779999999985167
No 16
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.39 E-value=9.6 Score=16.86 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCC
Q ss_conf 689978999999987698998822016552788667367
Q T0517 98 EKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFP 136 (159)
Q Consensus 98 ~~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLid 136 (159)
.+-.++.||++.|+++|++=|. ++++-|||-
T Consensus 6 Lk~k~~~EL~~iA~~lgIen~~--------~lrKQeLif 36 (47)
T d1a62a1 6 LKNTPVSELITLGENMGLENLA--------RMRKQDIIF 36 (47)
T ss_dssp HHTSCHHHHHHHHHTTTCCCCT--------TSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHCCCCCCC--------CCCHHHHHH
T ss_conf 8159999999999994997700--------200999999
No 17
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1a8va1
Probab=24.94 E-value=11 Score=16.41 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHCCC
Q ss_conf 89978999999987698998822016552788667367
Q T0517 99 KAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFP 136 (159)
Q Consensus 99 ~v~~~~eLl~~a~e~Gvk~~aC~msm~l~gi~~edLid 136 (159)
+-.++.||++.|.++|+.=|. ++++.|||-
T Consensus 7 k~k~~~EL~~iA~~lgien~s--------~lrKqeLif 36 (47)
T d1a62a1 7 KNTPVSELITLGENMGLENLA--------RMRKQDIIF 36 (47)
T ss_dssp HTSCHHHHHHHHHTTTCCCCT--------TSCHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCCCCC--------HHHHHHHHH
T ss_conf 428948999999870888841--------010789999
No 18
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.77 E-value=26 Score=14.14 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCC---CCHHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf 58999999985689---97899999998769899882201655
Q T0517 87 GKKMLLEMMKEEKA---PKLSDLLSGARKKEVKFYACQLSVEI 126 (159)
Q Consensus 87 ~~~~~~~~m~~~~v---~~~~eLl~~a~e~Gvk~~aC~msm~l 126 (159)
...-+.+.+++.++ +.+.||++.+++.|+.++..|-+.+-
T Consensus 121 ~~~~i~~~v~~~~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~ 163 (291)
T d2bdua1 121 PKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGD 163 (291)
T ss_dssp BGGGHHHHHHHSCCCBCBTHHHHHHHHHHHTCCEEEEEEEEHH
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999999999669876638999999999749708998587399
No 19
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.97 E-value=27 Score=14.04 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHCCCEEEEECC
Q ss_conf 9789999999876989988220
Q T0517 101 PKLSDLLSGARKKEVKFYACQL 122 (159)
Q Consensus 101 ~~~~eLl~~a~e~Gvk~~aC~m 122 (159)
|.+.|+++.+++.|+++..|+.
T Consensus 49 pgv~e~L~~L~~~G~~~~v~S~ 70 (164)
T d1u7pa_ 49 PEVPEVLGRLQSLGVPVAAASR 70 (164)
T ss_dssp TTHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEEC
T ss_conf 5799999999978994899735
No 20
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} SCOP: d1szpb1 d1b22a_
Probab=20.89 E-value=27 Score=14.03 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 254435701345899999998568997899999998
Q T0517 76 LPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGAR 111 (159)
Q Consensus 76 lp~s~~~~~g~~~~~~~~~m~~~~v~~~~eLl~~a~ 111 (159)
+|.+.+..+|++..-.+ ++++.|+-++++++....
T Consensus 1 ~~ie~L~~~Gig~~~~~-kL~~aG~~Ti~~i~~~t~ 35 (64)
T d1szpa1 1 VPIEKLQVNGITMADVK-KLRESGLHTAEAVAYAPR 35 (64)
T ss_dssp CCGGGGCCTTCCHHHHH-HHHTTSCCSHHHHHHSCS
T ss_pred CCHHHHCCCCCCHHHHH-HHHHCCCCCHHHHHHCCH
T ss_conf 98574302799998899-998735767688982388
Done!