Query T0518 ZP_02066194.1, Bacteroides ovatus, 288 residues
Match_columns 288
No_of_seqs 163 out of 748
Neff 8.0
Searched_HMMs 11830
Date Fri May 21 18:05:59 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0518.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0518.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06439 DUF1080: Domain of Un 100.0 9.1E-40 7.7E-44 250.6 12.9 172 60-285 1-172 (172)
2 PF02057 Glyco_hydro_59: Glyco 96.8 0.01 8.5E-07 32.0 13.7 133 109-286 534-667 (669)
3 PF09224 DUF1961: Domain of un 95.7 0.042 3.6E-06 28.3 11.1 182 68-284 15-218 (218)
4 PF00722 Glyco_hydro_16: Glyco 95.6 0.047 4E-06 28.0 11.6 127 82-232 11-148 (185)
5 PF07622 DUF1583: Protein of u 92.6 0.21 1.8E-05 24.2 7.0 57 82-143 201-264 (399)
6 PF07081 DUF1349: Protein of u 92.0 0.25 2.1E-05 23.7 14.6 159 81-288 5-179 (183)
7 PF08787 Alginate_lyase2: Algi 88.4 0.47 3.9E-05 22.1 5.7 65 199-285 161-235 (236)
8 PF05481 Myco_19_kDa: Mycobact 77.6 1 8.6E-05 20.1 3.8 61 1-72 1-62 (160)
9 PF07953 Toxin_R_bind_N: Clost 70.9 2.2 0.00018 18.2 11.0 137 110-287 48-188 (195)
10 PF12262 Lipase_bact_N: Bacter 69.8 2 0.00017 18.4 3.7 27 1-29 1-27 (268)
11 PF07619 DUF1581: Protein of u 64.8 2.9 0.00025 17.4 5.4 20 209-228 2-21 (84)
12 PF07901 DUF1672: Protein of u 64.2 0.8 6.7E-05 20.8 0.8 22 1-22 1-22 (304)
13 PF01298 Lipoprotein_5: Transf 63.3 3.1 0.00026 17.3 4.0 22 1-22 1-22 (593)
14 PF03388 Lectin_leg-like: Legu 63.2 3.1 0.00026 17.3 6.3 66 68-144 18-91 (230)
15 PF10566 Glyco_hydro_97: Glyco 53.6 1.1 9.4E-05 19.9 0.0 23 119-144 120-142 (643)
16 PF08085 Entericidin: Enterici 44.9 4.1 0.00035 16.6 1.8 21 1-21 1-21 (42)
17 PF07172 GRP: Glycine rich pro 43.8 5.2 0.00044 16.0 2.2 20 1-20 1-20 (95)
18 PF02402 Lysis_col: Lysis prot 43.3 4.3 0.00037 16.4 1.7 24 1-26 1-24 (46)
19 PF04076 BOF: Bacterial OB fol 43.2 1.6 0.00013 19.0 -0.6 18 1-18 1-18 (126)
20 PF06085 Rz1: Lipoprotein Rz1 42.8 6.8 0.00057 15.3 2.6 26 1-27 1-26 (59)
21 PF06291 Lambda_Bor: Bor prote 40.8 5.4 0.00046 15.9 1.9 23 1-27 1-23 (97)
22 PF05079 DUF680: Protein of un 39.6 7.3 0.00062 15.1 2.4 13 1-13 1-13 (75)
23 PF02210 Laminin_G_2: Laminin 38.7 7.9 0.00067 14.9 4.6 34 199-232 51-84 (128)
24 PF06474 MLTD_N: MLTD_N; Inte 36.9 3 0.00025 17.4 0.0 24 1-29 1-24 (95)
25 PF11153 DUF2931: Protein of u 36.4 7.7 0.00065 14.9 2.1 10 213-222 153-162 (216)
26 PF01441 Lipoprotein_6: Lipopr 30.9 4.2 0.00035 16.5 0.0 26 1-28 1-26 (210)
27 PF02973 Sialidase: Sialidase, 28.5 12 0.00099 13.9 7.4 31 199-229 100-132 (190)
28 PF09710 Trep_dent_lipo: Trepo 28.1 12 0.001 13.8 2.8 26 4-33 5-30 (394)
29 PF09690 PYST-C1: Plasmodium y 27.8 12 0.00097 13.9 1.8 26 1-26 1-27 (86)
30 PF06518 DUF1104: Protein of u 27.5 8.7 0.00073 14.7 1.1 21 1-21 1-21 (142)
31 PF09381 Porin_OmpG: Outer mem 25.7 6.8 0.00057 15.3 0.3 24 1-27 1-24 (301)
32 PF11777 DUF3316: Protein of u 22.8 14 0.0012 13.4 1.5 15 81-95 73-87 (114)
33 PF03304 Mlp: Mlp lipoprotein 21.6 16 0.0013 13.1 3.2 22 1-25 1-22 (181)
34 PF11853 DUF3373: Protein of u 21.5 14 0.0012 13.5 1.2 22 1-22 1-23 (489)
35 PF12099 DUF3575: Protein of u 21.4 16 0.0014 13.1 2.2 26 113-138 70-96 (189)
36 PF06649 DUF1161: Protein of u 20.9 14 0.0012 13.4 1.2 18 1-18 1-18 (75)
37 PF04202 Mfp-3: Foot protein 3 20.7 17 0.0014 13.0 1.8 14 1-14 1-14 (71)
No 1
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3hbk_A 3h3l_A.
Probab=100.00 E-value=9.1e-40 Score=250.57 Aligned_cols=172 Identities=34% Similarity=0.643 Sum_probs=141.1
Q ss_pred CCEEEECCCCHHHCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67881178874340215788888745887888997017655455666421147873364799999985489987504664
Q T0518 60 GYITIFDGETFNGWRGYGKDRVPTKWTIEDGCIKFNGSGGGEAQDGDGGDLIFAHKFKNFELELEWKVAKGSNSGILYLA 139 (288)
Q Consensus 60 ~~~~LFdGkdL~gW~~~~~~~~~~~W~VedG~l~~~~~~~~~~~~~~~g~l~T~~~f~dF~L~~E~k~~~~~NSGi~~~~ 139 (288)
||++||||+||+||+..++ .|. +||+|+.. ......+.|+|+++|+||+|++|||+.+++||||+||+
T Consensus 1 g~~~lFng~~l~gW~~~~~-----~~~-~dG~l~~~------~~~~~~~~l~t~~~~~df~l~~d~k~~~~~nsGv~~r~ 68 (172)
T PF06439_consen 1 GWISLFNGKDLSGWKTYGG-----GWW-EDGVLVDS------SSGGGGGFLYTKKKFKDFELEVDFKLSPGGNSGVFFRV 68 (172)
T ss_dssp -EEES---------B---S-----SS------EE---------GGG----EE-SS--SSEEEEEEEEE-B--EE-EESS-
T ss_pred CCEEEECCCCHHHCEECCC-----CCC-CCCEEEEC------CCCCCCCEEEECCCCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf 9779368989885827899-----869-89989977------56898614887871057899999997889945999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 36776666766432210146436998607888655436777740336615657720005888874689999998968998
Q T0518 140 QEVTSKDKDGNDVLEPIYISAPEYQILDNANHPDAKLGKDNNRQSASLYDMIPAVPQNSKPFGEWNKAKIMVYKGTVVHG 219 (288)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~E~Qild~~~~~~~~~~~~~~~~~g~iy~~~~~~~~~~~p~geWN~~~I~~~g~~i~~~ 219 (288)
.... ...+..++|+||.++... ...+.+|++|.+.++...+..++|+||+++|+|+|++++++
T Consensus 69 ~~~~----------~~~~~~gy~~qi~~~~~~-------~~~~~~G~~~~~~~~~~~~~~~~g~W~~~~I~~~g~~i~v~ 131 (172)
T PF06439_consen 69 SPEE----------GKDWYNGYEVQIDDSGGG-------KLNHKTGSLYNQLAPSKKAAIPPGEWNTLRIVVKGNRITVY 131 (172)
T ss_dssp --S-------------GGGSS-EEEEE-TTT----------------BTTTB--SS--------EEEEEEEEETTEEEEE
T ss_pred ECCC----------CCCCCEEEEEEEECCCCC-------CCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEE
T ss_conf 3356----------888644899999678787-------76676324636467532457899975899999999999999
Q ss_pred ECCEEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEE
Q ss_conf 899889820232200001000123334445544555555566778774175511891688576785
Q T0518 220 QNDENVLEYHLWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFIGLQDHGDDVWFRNIRVK 285 (288)
Q Consensus 220 iNG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~LQ~hg~~V~fRNI~Ik 285 (288)
|||++|+++......+.+ ..+|+|+||.|+++|+||||+||
T Consensus 132 lNG~~v~~~~~~~~~~~~-------------------------~~~G~IgL~~~~~~v~frNi~Ik 172 (172)
T PF06439_consen 132 LNGQLVVDFTDPDPDYSN-------------------------PTSGPIGLQSHGGEVAFRNIRIK 172 (172)
T ss_dssp ETTEEEEEEE---HHHHH-------------------------H-----EE------EEEEEEEEE
T ss_pred ECCEEEEEEECCCCCCCC-------------------------CCCEEEEEEECCCEEEEEEEEEC
T ss_conf 999999988758777566-------------------------89548999969990998789989
No 2
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity , , . GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine .; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process
Probab=96.83 E-value=0.01 Score=31.98 Aligned_cols=133 Identities=13% Similarity=0.119 Sum_probs=79.4
Q ss_pred CEEECCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 11478733647999999854899875046643677666676643221014643699860788865543677774033661
Q T0518 109 DLIFAHKFKNFELELEWKVAKGSNSGILYLAQEVTSKDKDGNDVLEPIYISAPEYQILDNANHPDAKLGKDNNRQSASLY 188 (288)
Q Consensus 109 ~l~T~~~f~dF~L~~E~k~~~~~NSGi~~~~~~~~~~~~~~~~~~~~~~~~~~E~Qild~~~~~~~~~~~~~~~~~g~iy 188 (288)
.|+-+..+.|+...+++.+....-.|+++..+...+.... .-..++-+-|.++.. +..-..- .+..
T Consensus 534 s~iGD~~W~nytVs~Dv~~e~~~~g~v~la~r~~~~g~~~-------~~~~g~~~~v~~~G~---w~i~~~~---~~~~- 599 (669)
T PF02057_consen 534 SLIGDYRWSNYTVSCDVLIETPDSGGVFLAGRVNRGGCLI-------RSARGYFFWVFANGA---WSITSDL---KGWT- 599 (669)
T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC-------CCCCEEEEEEECCCE---EEEECCC---CCEE-
T ss_conf 5634777358899999997046762489998623587314-------677448999986871---8997477---7518-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCEEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 56577200058888746899999989689988998898202322000010001233344455445555555667787741
Q T0518 189 DMIPAVPQNSKPFGEWNKAKIMVYKGTVVHGQNDENVLEYHLWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFI 268 (288)
Q Consensus 189 ~~~~~~~~~~~p~geWN~~~I~~~g~~i~~~iNG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 268 (288)
.-..-.+....+.|++..+.++|..+...+||.++-... ....+..|.+
T Consensus 600 --~la~g~~~~~~~~Whtl~l~~~g~~~~~~~~g~~v~~~~-----------------------------~~~~~~~G~a 648 (669)
T PF02057_consen 600 --TLASGTADLGAGTWHTLTLSFKGDTITAMLNGKTVWTNA-----------------------------DVGYPKNGWA 648 (669)
T ss_pred --EEECCCCCCCCCCEEEEEEEEECCEEEEEECCEEEEEEC-----------------------------CCCCCCCCEE
T ss_conf --971350145566148999997165899997894777753-----------------------------5678777438
Q ss_pred EEEECCC-CEEEEEEEEEE
Q ss_conf 7551189-16885767854
Q T0518 269 GLQDHGD-DVWFRNIRVKV 286 (288)
Q Consensus 269 ~LQ~hg~-~V~fRNI~Ik~ 286 (288)
+|=.|+- .++|-|+.|..
T Consensus 649 aigt~~~~~~qFDNf~v~~ 667 (669)
T PF02057_consen 649 AIGTSSFETAQFDNFSVEA 667 (669)
T ss_pred EEEECCCCEEEECCEEEEE
T ss_conf 9962354014530268884
No 3
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1oq1_C.
Probab=95.73 E-value=0.042 Score=28.31 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=96.0
Q ss_pred CCHHHCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCC-CCCCEEECCCC-CCEEEEEEEEE-CCCCCCCEEEEECCCCC
Q ss_conf 87434021578888874588788899701765545566-64211478733-64799999985-48998750466436776
Q T0518 68 ETFNGWRGYGKDRVPTKWTIEDGCIKFNGSGGGEAQDG-DGGDLIFAHKF-KNFELELEWKV-AKGSNSGILYLAQEVTS 144 (288)
Q Consensus 68 kdL~gW~~~~~~~~~~~W~VedG~l~~~~~~~~~~~~~-~~g~l~T~~~f-~dF~L~~E~k~-~~~~NSGi~~~~~~~~~ 144 (288)
.|+++|+..++. .-.-.||.|+..+.-....... ..-..|-.++| ..+.+..||+. .+.+=.=|||-+.....
T Consensus 15 ~dv~~w~~eg~~----~~~~~~g~l~l~~~~d~e~~gd~a~~~fWcpe~FP~g~~v~wdF~pl~epgL~mlfF~AaG~~G 90 (218)
T PF09224_consen 15 EDVSDWVMEGPG----QVGFPDGRLHLSGTLDDEEYGDHAHFVFWCPETFPDGIVVTWDFKPLREPGLAMLFFAAAGMNG 90 (218)
T ss_dssp GGGTT-EEE--------EE-GGGSEEE--------SSTT--EEEE-SS------EEEEEEEEEE----EEEEEEEE----
T ss_pred HHHHHHHCCCCC----EEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 673113010880----7732688468730113100266302888785428998489877775378976888854047777
Q ss_pred CCCCCCCCCCCCCCCCCE---EEE--EE-CCCCC---------CCCCCCCCCCEEEEECC---CCCCCCCCCCCCCCCEE
Q ss_conf 666766432210146436---998--60-78886---------55436777740336615---65772000588887468
Q T0518 145 KDKDGNDVLEPIYISAPE---YQI--LD-NANHP---------DAKLGKDNNRQSASLYD---MIPAVPQNSKPFGEWNK 206 (288)
Q Consensus 145 ~~~~~~~~~~~~~~~~~E---~Qi--ld-~~~~~---------~~~~~~~~~~~~g~iy~---~~~~~~~~~~p~geWN~ 206 (288)
...-.. .+..++...+| -|| +. ++-++ +-++.. ....--++. ..||...+.. -.+
T Consensus 91 ~dlFd~-~la~RtG~y~qyhsGdina~hlSyFr~k~~~ERafrTcNLRK--s~Gf~Lva~gadplp~~~Da~~----~Yr 163 (218)
T PF09224_consen 91 EDLFDP-DLAERTGLYPQYHSGDINALHLSYFRHKHAEERAFRTCNLRK--SRGFHLVAQGADPLPPAADAYD----PYR 163 (218)
T ss_dssp --TT-T-TS------THHHH----EEEEEEES--SSHHHHTS---EEEE--E---EEEE--------GGG--S-----EE
T ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCC--CCCCEEEEECCCCCCCCCCCCC----CEE
T ss_conf 544487-754324767311037613124531213414443100034333--7780675404788998434687----646
Q ss_pred EEEEEECCEEEEEECCEEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCEEEEEEEE
Q ss_conf 9999998968998899889820232200001000123334445544555555566778774175511-89168857678
Q T0518 207 AKIMVYKGTVVHGQNDENVLEYHLWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFIGLQDH-GDDVWFRNIRV 284 (288)
Q Consensus 207 ~~I~~~g~~i~~~iNG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~LQ~h-g~~V~fRNI~I 284 (288)
++|+-.++.|...|||..+.++++..+.| +.....|+|++..- --.-.|||+.|
T Consensus 164 mel~Kdg~~V~f~ingl~if~wtD~~~~~------------------------gpvlg~G~~GFRqMapl~a~Y~n~~v 218 (218)
T PF09224_consen 164 MELIKDGPYVSFSINGLPIFEWTDDGPRW------------------------GPVLGAGKIGFRQMAPLRAEYRNLQV 218 (218)
T ss_dssp EEEEE----EEEEE---EEEEE------------------------------------------EE-TT-EEEEEEEEE
T ss_pred EEEEECCCEEEEEECCEEEEEEECCCCCC------------------------CCCCCCCEEEEEECCHHHHHHHCCCC
T ss_conf 89995287689998986899995589841------------------------55436644401523426665415339
No 4
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2vy0_B 2hyk_A 3dgt_A 2cl2_A 2uwa_B 2vh9_B 2uwc_B 2uwb_B 1un1_B 1umz_A ....
Probab=95.61 E-value=0.047 Score=28.03 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=70.6
Q ss_pred CCCEEEECC-EEEECCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEECC--CCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 874588788-899701765545566642114787336479999998548--99875046643677666676643221014
Q T0518 82 PTKWTIEDG-CIKFNGSGGGEAQDGDGGDLIFAHKFKNFELELEWKVAK--GSNSGILYLAQEVTSKDKDGNDVLEPIYI 158 (288)
Q Consensus 82 ~~~W~VedG-~l~~~~~~~~~~~~~~~g~l~T~~~f~dF~L~~E~k~~~--~~NSGi~~~~~~~~~~~~~~~~~~~~~~~ 158 (288)
+..-.|++| .|++...... ...-.+|-|.|+..|.--.+++..|++. +..+++++ .. . .. ++
T Consensus 11 ~~nv~~~~g~~L~l~~~~~~-~~~~~sg~i~S~~~~~yG~~e~r~k~~~~~G~~~afwl-~~-~-----------~~-~~ 75 (185)
T PF00722_consen 11 PDNVSVENGGNLVLTARRES-NGKYTSGRIESKFSFQYGRFEARAKLPSGPGVWPAFWL-SS-E-----------DN-WP 75 (185)
T ss_dssp CTCEEEE---EEEEEEEEEE-SCEEEEEEEEESSEEEE-EEEEEEE--TT---EEEEEE-ET-T-----------TS-TT
T ss_pred CCCEEECCCCEEEEEEEECC-CCCEEECEEEECCEEEEEEEEEEEEECCCCCEEEEEEC-CC-C-----------CC-CC
T ss_conf 98689919998999998446-57357588998875265499999996699987986420-57-6-----------33-44
Q ss_pred CCCEEEEEECC-CCCCCCCCCCCCCEEEEECCCCCC------C-CCCCCCCCCCEEEEEEEECCEEEEEECCEEEEEECC
Q ss_conf 64369986078-886554367777403366156577------2-000588887468999999896899889988982023
Q T0518 159 SAPEYQILDNA-NHPDAKLGKDNNRQSASLYDMIPA------V-PQNSKPFGEWNKAKIMVYKGTVVHGQNDENVLEYHL 230 (288)
Q Consensus 159 ~~~E~Qild~~-~~~~~~~~~~~~~~~g~iy~~~~~------~-~~~~~p~geWN~~~I~~~g~~i~~~iNG~~v~~~~~ 230 (288)
.+.||.| ... ..+.. ....++..... . ....-+..+|++|.|.+..++|..++||+.+.+...
T Consensus 76 ~~~EIDi-E~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~fyvDg~~v~~~~~ 146 (185)
T PF00722_consen 76 SSGEIDI-EFLGNDPNQ--------VQTNVHWNGNGGQQNSKTYPLGFDPSDDFHTYGVEWTPDKIRFYVDGKLVRTITN 146 (185)
T ss_dssp CEEEEEE-EEETTTTTE--------EEEEEEB---CCCCCEEEEESSS-TTTS-EEEEEEEESSEEEEEETTEEEEEEEC
T ss_pred CHHHHHH-HHCCCCCCC--------CCCEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEECCEEEEEEEC
T ss_conf 1154213-323122555--------7756982788996320566225567788689999996898999999999999970
Q ss_pred CC
Q ss_conf 22
Q T0518 231 WT 232 (288)
Q Consensus 231 ~~ 232 (288)
..
T Consensus 147 ~~ 148 (185)
T PF00722_consen 147 SD 148 (185)
T ss_dssp SG
T ss_pred CC
T ss_conf 33
No 5
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Several Rhodopirellula baltica proteins share this probable domain. Most of these proteins are predicted to be secreted or membrane-associated.
Probab=92.56 E-value=0.21 Score=24.22 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCCEEEECCEEEECCCCCCCCCCCCCCCEEE-C-CCCCCEEEEEEEE-E----CCCCCCCEEEEECCCC
Q ss_conf 8745887888997017655455666421147-8-7336479999998-5----4899875046643677
Q T0518 82 PTKWTIEDGCIKFNGSGGGEAQDGDGGDLIF-A-HKFKNFELELEWK-V----AKGSNSGILYLAQEVT 143 (288)
Q Consensus 82 ~~~W~VedG~l~~~~~~~~~~~~~~~g~l~T-~-~~f~dF~L~~E~k-~----~~~~NSGi~~~~~~~~ 143 (288)
...|...|.-|++...+ +. -.+...+ . .-=+||.+.+||. + ++++-+.+++.+.-+.
T Consensus 201 s~~~~~tddGl~m~a~g-g~----w~~~~l~~q~~v~GDFDItaeFd~lq~~~~~~g~a~l~L~V~l~d 264 (399)
T PF07622_consen 201 SKPLMATDDGLRMTAPG-GP----WTQTGLSPQFEVEGDFDITAEFDQLQAEDPEGGQASLALEVSLDD 264 (399)
T ss_pred CCCCEECCCCEEEECCC-CC----CCCCEECCCCCCCCCEEEEEEECCEEECCCCCCEEEEEEEEECCC
T ss_conf 77744368865986479-97----333002367322664067888522464168885579999998289
No 6
>PF07081 DUF1349: Protein of unknown function (DUF1349); InterPro: IPR009784 This family consists of several hypothetical bacterial proteins but contains one sequence (P40893 from SWISSPROT) from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=92.03 E-value=0.25 Score=23.74 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=81.2
Q ss_pred CCCCEEEECCEEEECCCCCCCCCC-------CCCCCEEECCCCCCEEEEEEEEECCC---CCCCEEEEECCCCCCCCCCC
Q ss_conf 887458878889970176554556-------66421147873364799999985489---98750466436776666766
Q T0518 81 VPTKWTIEDGCIKFNGSGGGEAQD-------GDGGDLIFAHKFKNFELELEWKVAKG---SNSGILYLAQEVTSKDKDGN 150 (288)
Q Consensus 81 ~~~~W~VedG~l~~~~~~~~~~~~-------~~~g~l~T~~~f~dF~L~~E~k~~~~---~NSGi~~~~~~~~~~~~~~~ 150 (288)
.|..|+++++.|++...+..+.-. ..++.++....=+||.+++.++.... --.|++++..+. .+.
T Consensus 5 ~P~~~~~~~~~l~i~~~~~TD~W~~t~~gf~~~~~p~l~~~~~~~F~~~v~v~~~~~~~yDQaGL~v~~de~--~Wi--- 79 (183)
T PF07081_consen 5 EPASWSITGDSLTITAPPKTDFWRKTHYGFIRDNAPFLYTPVPGDFTAEVKVSGDFKELYDQAGLMVYVDED--NWI--- 79 (183)
T ss_pred CCCEEEECCCEEEEEECCCCCEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCHHEEECEEEEEEECCC--CCE---
T ss_conf 894399839979999589973820899983217867997505898799999982871148343999998986--778---
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC--CCCCCCCCEEEEEEEECCEEEE--EECCEEEE
Q ss_conf 4322101464369986078886554367777403366156577200--0588887468999999896899--88998898
Q T0518 151 DVLEPIYISAPEYQILDNANHPDAKLGKDNNRQSASLYDMIPAVPQ--NSKPFGEWNKAKIMVYKGTVVH--GQNDENVL 226 (288)
Q Consensus 151 ~~~~~~~~~~~E~Qild~~~~~~~~~~~~~~~~~g~iy~~~~~~~~--~~~p~geWN~~~I~~~g~~i~~--~iNG~~v~ 226 (288)
..|+|+.- . +....+++....-.... .....+..-.++|...|+.+.+ ..+|+.
T Consensus 80 -------K~giE~~~---d----------g~~~l~sVvT~~~SDws~~~~~~~~~~v~lrv~R~g~~~~~~~s~dG~~-- 137 (183)
T PF07081_consen 80 -------KAGIEYEN---D----------GKPRLSSVVTNGYSDWSTSPVPSDGQSVWLRVSRRGDALAIYYSTDGKT-- 137 (183)
T ss_pred -------EEEEEECC---C----------CCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCE--
T ss_conf -------99699917---9----------9379999987587755166576789879999999799699999879968--
Q ss_pred EECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--EECCCCEEEEEEEEEECC
Q ss_conf 20232200001000123334445544555555566778774175--511891688576785449
Q T0518 227 EYHLWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFIGL--QDHGDDVWFRNIRVKVLD 288 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~L--Q~hg~~V~fRNI~Ik~Ld 288 (288)
|...+... +.+ .....-|..+- +..|-.|.|.+++|++++
T Consensus 138 --------w~~~R~~~-~~~-------------~~~~~VG~~a~sP~~~g~~~~F~~~~i~~~~ 179 (183)
T PF07081_consen 138 --------WRLLRLFH-FPE-------------PEEVQVGIYACSPQGEGFEVRFDEFEIEPPD 179 (183)
T ss_pred --------EEEEEEEE-CCC-------------CCCEEEEEEEECCCCCCEEEEEEEEEEECCC
T ss_conf --------89999998-898-------------8977999996887899789999799986275
No 7
>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1uai_A 1j1t_A 2za9_A 2cws_A 2zaa_A 2zab_A 2z42_A 2zac_A 1vav_B.
Probab=88.45 E-value=0.47 Score=22.15 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=43.5
Q ss_pred CCCCCCEEEEEEEECCEEEEEECCEEEEEECCCC---CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC--
Q ss_conf 8888746899999989689988998898202322---00001000123334445544555555566778774175511--
Q T0518 199 KPFGEWNKAKIMVYKGTVVHGQNDENVLEYHLWT---KQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFIGLQDH-- 273 (288)
Q Consensus 199 ~p~geWN~~~I~~~g~~i~~~iNG~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~LQ~h-- 273 (288)
.+.|+|-+|+|.+.++.+.+.+||.......... ..|.. ...+-|.-..+|+.
T Consensus 161 i~LG~~F~y~I~v~~~~l~V~ing~~~~~~~~~~~l~~~w~~----------------------~~~YFKAG~Y~Q~~~~ 218 (236)
T PF08787_consen 161 IPLGEKFSYEIIVSGGKLTVTINGEGKSTVDFIHDLDSGWGG----------------------DWFYFKAGVYNQDNDG 218 (236)
T ss_dssp B-TT-EEEEEEEEE---EEEEE---EEEE--------CCGCC----------------------TTBEEEE-EEES-BTT
T ss_pred EECCCEEEEEEEEECCEEEEEEECCCEEEEEEEECCCCCCCC----------------------CCEEEEEEEEECCCCC
T ss_conf 048998999999979999999978714788764004424467----------------------5217885357024789
Q ss_pred -----CCCEEEEEEEEE
Q ss_conf -----891688576785
Q T0518 274 -----GDDVWFRNIRVK 285 (288)
Q Consensus 274 -----g~~V~fRNI~Ik 285 (288)
..+|.|..|.|.
T Consensus 219 ~~~~~~~~v~fy~L~v~ 235 (236)
T PF08787_consen 219 DASGDYAEVTFYSLEVS 235 (236)
T ss_dssp TTTCHHCCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEE
T ss_conf 98733899999998977
No 8
>PF05481 Myco_19_kDa: Mycobacterium 19 kDa lipoprotein antigen; InterPro: IPR008691 Most of the antigens of Mycobacterium leprae and Mycobacterium tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18 kDa M. leprae antigen and the 19 kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes , .; GO: 0016020 membrane
Probab=77.58 E-value=1 Score=20.14 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=33.0
Q ss_pred CCEEEH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH
Q ss_conf 950207-899999999987522565456654321100122223334344556676676236788117887434
Q T0518 1 MKKVFY-PLACCCLAAGVFASCGGQKKANAQEEPSKVALSYSKSLKAPETDSLNLPVDENGYITIFDGETFNG 72 (288)
Q Consensus 1 Mk~~~~-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LFdGkdL~g 72 (288)
|||.++ .+..++++++.+..|+...+......+.... ..+.. .+...++-.+.-||+++..
T Consensus 1 m~~~~~~av~g~A~~aa~~~GCS~~~~~~~~~~~t~~~----------~~~~~-sp~~a~g~~V~VdG~~~~~ 62 (160)
T PF05481_consen 1 MKRGLTVAVAGAAALAAGLSGCSSGDKSAASSSPTSSS----------SSPSA-SPGAAAGTQVTVDGKDQDV 62 (160)
T ss_pred CCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------CCCCC-CCCCCCCCEEEECCCCCCC
T ss_conf 96157765325899987541136898526566765577----------77776-7776776479988831468
No 9
>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains . This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif . The role of this domain in receptor binding appears to be indirect. ; GO: 0033264 bontoxilysin activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 1z0h_A 1s0d_A 2nm1_A 1epw_A 1i1e_A 1g9b_A 1g9c_A 2np0_A 1g9a_A 1s0g_A ....
Probab=70.88 E-value=2.2 Score=18.19 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=67.9
Q ss_pred EEECCCCCCEEEEEEEEECCCCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-EEEE
Q ss_conf 147873364799999985489987504664367--7666676643221014643699860788865543677774-0336
Q T0518 110 LIFAHKFKNFELELEWKVAKGSNSGILYLAQEV--TSKDKDGNDVLEPIYISAPEYQILDNANHPDAKLGKDNNR-QSAS 186 (288)
Q Consensus 110 l~T~~~f~dF~L~~E~k~~~~~NSGi~~~~~~~--~~~~~~~~~~~~~~~~~~~E~Qild~~~~~~~~~~~~~~~-~~g~ 186 (288)
+.....|.||.+.|=.|.+...+ .+.+.-... .... +..|-++.+-++.-..+... ..+.. ....
T Consensus 48 ~~~n~~~~nFSIsFWiK~~~~~~-~~~~~n~y~II~~~~----------~NsGW~I~l~~n~lv~~l~d-~~g~~~~i~~ 115 (195)
T PF07953_consen 48 IFYNSMYNNFSISFWIKIPKYDN-KISLNNEYTIISNKD----------NNSGWKIGLNGNNLVWNLQD-SNGNEKSIYF 115 (195)
T ss_dssp GSTCTTCSSEEEEEEEE---TTS-GGHTT-EEEEEEEEC----------TTE-EEEEEETTEEEEEEE--TTS-EEEEEE
T ss_pred HHCCCCCCCEEEEEEEECCCCCC-CCCCCCCCEEEECCC----------CCCCEEEEEECCEEEEEEEE-CCCCCEEEEE
T ss_conf 20035456678999998278677-400265427995146----------88463999968978999980-8997105788
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEEC-CEEEEEECCEEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 615657720005888874689999998-9689988998898202322000010001233344455445555555667787
Q T0518 187 LYDMIPAVPQNSKPFGEWNKAKIMVYK-GTVVHGQNDENVLEYHLWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHE 265 (288)
Q Consensus 187 iy~~~~~~~~~~~p~geWN~~~I~~~g-~~i~~~iNG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (288)
-|+........ .+.|+...|.... +....++||+.+.+-.... .......
T Consensus 116 ~y~~~~~is~~---~NkW~~ItIt~DR~~~~~iYInGkLi~~~~I~~--------------------------~~~I~~s 166 (195)
T PF07953_consen 116 EYDIMINISDY---INKWHFITITNDRLGNAKIYINGKLIKQISISN--------------------------LGNIDSS 166 (195)
T ss_dssp E--SCSSSSSS---TTSEEEEEEEEETTSEEEEEE---EEEEEE-TT-----------------------------EE--
T ss_pred EECCCCCCCCC---CCCEEEEEEEECCCCCEEEEECCEEEEEEEHHH--------------------------CCCCCCC
T ss_conf 70233465300---296799999955788677998887876578778--------------------------4774336
Q ss_pred CCEEEEECCCCEEEEEEEEEEC
Q ss_conf 7417551189168857678544
Q T0518 266 GFIGLQDHGDDVWFRNIRVKVL 287 (288)
Q Consensus 266 G~I~LQ~hg~~V~fRNI~Ik~L 287 (288)
=-|.|...|.-=..++|+|++|
T Consensus 167 ~~i~~~~~~~~~~n~~~~I~~~ 188 (195)
T PF07953_consen 167 NNISFKIDGCIDENNYIWIDYF 188 (195)
T ss_dssp SEEEEEEES-SSTT-EEEEEEE
T ss_pred CEEEEEEECCCCCCCEEEEEEE
T ss_conf 6589986022566532567234
No 10
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=69.79 E-value=2 Score=18.36 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=16.3
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 95020789999999998752256545665
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKKANA 29 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~~~~ 29 (288)
|||+++.++++. +..++.|++......
T Consensus 1 Mkk~~l~~~ias--al~LaGCg~ds~~~~ 27 (268)
T PF12262_consen 1 MKKKLLSLAIAS--ALGLAGCGGDSESSG 27 (268)
T ss_pred CCHHHHHHHHHH--HHHCCCCCCCCCCCC
T ss_conf 943589999999--975111479976767
No 11
>PF07619 DUF1581: Protein of unknown function (DUF1581); InterPro: IPR011475 Several Rhodopirellula baltica proteins share this probable domain. Most of these proteins are predicted to be secreted or membrane-associated.
Probab=64.84 E-value=2.9 Score=17.45 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=13.2
Q ss_pred EEEECCEEEEEECCEEEEEE
Q ss_conf 99998968998899889820
Q T0518 209 IMVYKGTVVHGQNDENVLEY 228 (288)
Q Consensus 209 I~~~g~~i~~~iNG~~v~~~ 228 (288)
..++++.+++.+||..+..-
T Consensus 2 ~~ird~~~~~~~NGr~i~~~ 21 (84)
T PF07619_consen 2 VSIRDGEQTHFINGRPIHRE 21 (84)
T ss_pred CEEECCEEEEEECCEEEEEE
T ss_conf 34627838998899887750
No 12
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=64.24 E-value=0.8 Score=20.77 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCEEEHHHHHHHHHHHHHHHCC
Q ss_conf 9502078999999999875225
Q T0518 1 MKKVFYPLACCCLAAGVFASCG 22 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~ 22 (288)
|+|++.+|++++|+++.|+...
T Consensus 1 M~K~i~~ll~~~lLLgGCs~m~ 22 (304)
T PF07901_consen 1 MKKRIISLLAATLLLGGCSNMN 22 (304)
T ss_pred CHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9148999999999974444676
No 13
>PF01298 Lipoprotein_5: Transferrin binding protein-like solute binding protein; InterPro: IPR001677 Bacterial transferrin binding proteins act as transferrin receptors and are required for transferrin utilisation. Transferrins are iron-binding glycoproteins that control the level of free iron in biological fluids. ; GO: 0004998 transferrin receptor activity, 0016020 membrane
Probab=63.28 E-value=3.1 Score=17.28 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCEEEHHHHHHHHHHHHHHHCC
Q ss_conf 9502078999999999875225
Q T0518 1 MKKVFYPLACCCLAAGVFASCG 22 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~ 22 (288)
|++.++..++.+|+..++++|.
T Consensus 1 M~~~~~~~~~~~l~~~lLsACs 22 (593)
T PF01298_consen 1 MNNPPLNQSAIALAAFLLSACS 22 (593)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9865552558999999998734
No 14
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 P49256 from SWISSPROT and ERGIC-53 P49257 from SWISSPROT lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins . The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, this alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin . Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway ,.; GO: 0016020 membrane; PDB: 1r1z_D 1gv9_A 2duq_B 2e6v_A 2duo_A 2dup_B 2dur_B 2a6x_B 2a6w_A 2a6v_B ....
Probab=63.24 E-value=3.1 Score=17.27 Aligned_cols=66 Identities=14% Similarity=0.436 Sum_probs=42.6
Q ss_pred CCHHHCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCEEECCCC--CCEEEEEEEEECCC-----CCCCE-EEEE
Q ss_conf 8743402157888887458878889970176554556664211478733--64799999985489-----98750-4664
Q T0518 68 ETFNGWRGYGKDRVPTKWTIEDGCIKFNGSGGGEAQDGDGGDLIFAHKF--KNFELELEWKVAKG-----SNSGI-LYLA 139 (288)
Q Consensus 68 kdL~gW~~~~~~~~~~~W~VedG~l~~~~~~~~~~~~~~~g~l~T~~~f--~dF~L~~E~k~~~~-----~NSGi-~~~~ 139 (288)
+.+..|...+. . .+.++-|++++.. ....|.||++.+. .+|+++++||+... +..|+ +|.+
T Consensus 18 ~~i~~W~~~G~-----t-~~~~~~I~LTp~~-----~~~~G~iw~~~pl~~~~weie~~Fri~g~~~~~~~gdGla~W~t 86 (230)
T PF03388_consen 18 KSIPNWDIGGS-----T-VVTDDYIRLTPDS-----QSQRGSIWSKKPLPSDDWEIEFTFRIHGSETSGLGGDGLAFWYT 86 (230)
T ss_dssp CCCTTEEE----------EE-SS-EECE-SS-----TT----EEESS-B--SCEEEEEEEEEE----TT------EEEEE
T ss_pred CCCCCCEECCE-----E-EEECCEEEECCCC-----CCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 86578788762-----8-8629989986797-----66788898737767778799999999255688747985899997
Q ss_pred CCCCC
Q ss_conf 36776
Q T0518 140 QEVTS 144 (288)
Q Consensus 140 ~~~~~ 144 (288)
++...
T Consensus 87 ~~~~~ 91 (230)
T PF03388_consen 87 KDRGS 91 (230)
T ss_dssp CSSSS
T ss_pred CCCCC
T ss_conf 57753
No 15
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; PDB: 2jkp_A 2zq0_A 2jke_B 2d73_B 2jka_B.
Probab=53.61 E-value=1.1 Score=19.91 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=16.1
Q ss_pred EEEEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 79999998548998750466436776
Q T0518 119 FELELEWKVAKGSNSGILYLAQEVTS 144 (288)
Q Consensus 119 F~L~~E~k~~~~~NSGi~~~~~~~~~ 144 (288)
-.|.++||. -|.||-||..-+.+
T Consensus 120 ~~~~l~fRv---yddGvAfRY~~p~~ 142 (643)
T PF10566_consen 120 QRLNLEFRV---YDDGVAFRYEFPQQ 142 (643)
T ss_dssp EEEEEEEEE----------EEEE--B
T ss_pred CEEEEEEEE---CCCCEEEEEEECCC
T ss_conf 538999999---06987999997798
No 16
>PF08085 Entericidin: Entericidin EcnA/B family; InterPro: IPR012556 This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing .; GO: 0009636 response to toxin, 0016020 membrane
Probab=44.86 E-value=4.1 Score=16.57 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=13.2
Q ss_pred CCEEEHHHHHHHHHHHHHHHC
Q ss_conf 950207899999999987522
Q T0518 1 MKKVFYPLACCCLAAGVFASC 21 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~ 21 (288)
|||..+.+++.+.++..+++|
T Consensus 1 Mkk~~~~~~~~~~~~~~l~gC 21 (42)
T PF08085_consen 1 MKKKILIILALLALALALAGC 21 (42)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 955899999999999988002
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=43.84 E-value=5.2 Score=15.95 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=7.5
Q ss_pred CCEEEHHHHHHHHHHHHHHH
Q ss_conf 95020789999999998752
Q T0518 1 MKKVFYPLACCCLAAGVFAS 20 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~ 20 (288)
|-+..+.|++.+|++.++++
T Consensus 1 M~sk~~llL~lllA~vllis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAAVLLIS 20 (95)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 92479999999999999998
No 18
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined . The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells . A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB . Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C-terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively . Sequence similarities between colicins E2, A and E1 are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides . Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase . The mature ColE2 lysis protein is located in the cell envelope . ; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=43.32 E-value=4.3 Score=16.43 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=13.7
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 95020789999999998752256545
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKK 26 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~ 26 (288)
|||+++.++..+ . .++++|+.+.-
T Consensus 1 MkKi~~~~i~~~-~-~~L~aCQaNyi 24 (46)
T PF02402_consen 1 MKKILFIGILLL-T-MLLAACQANYI 24 (46)
T ss_pred CCEEEEEHHHHH-H-HHHHHHHHCEE
T ss_conf 947877389999-9-99987201206
No 19
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 This family includes putative periplasmic proteins.; PDB: 1nnx_A.
Probab=43.23 E-value=1.6 Score=19.02 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=10.4
Q ss_pred CCEEEHHHHHHHHHHHHH
Q ss_conf 950207899999999987
Q T0518 1 MKKVFYPLACCCLAAGVF 18 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~ 18 (288)
|||+.+.+++++++.+.+
T Consensus 1 MKk~~i~~~~~L~~~~a~ 18 (126)
T PF04076_consen 1 MKKTLIATAAALASTPAF 18 (126)
T ss_dssp ------------------
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 957999999999988999
No 20
>PF06085 Rz1: Lipoprotein Rz1 precursor; InterPro: IPR010346 This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda, which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces .; GO: 0019064 viral envelope fusion with host membrane, 0019867 outer membrane
Probab=42.83 E-value=6.8 Score=15.28 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=14.6
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 950207899999999987522565456
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKKA 27 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~~ 27 (288)
|+++...|.+.++ .-.+++|++.+..
T Consensus 1 Mr~l~~~l~~~~~-~L~lsaC~S~p~~ 26 (59)
T PF06085_consen 1 MRKLKMLLCALAL-PLALSACSSKPPV 26 (59)
T ss_pred CHHHHHHHHHHHH-HHHHHHHCCCCCC
T ss_conf 9038999999999-9999871589976
No 21
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis .
Probab=40.81 E-value=5.4 Score=15.85 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=13.1
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 950207899999999987522565456
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKKA 27 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~~ 27 (288)
|||+.+..+++ + +++.|..+.-.
T Consensus 1 mkk~ll~~~l~---l-lltgCa~qtf~ 23 (97)
T PF06291_consen 1 MKKILLAAALA---L-LLTGCAQQTFT 23 (97)
T ss_pred CHHHHHHHHHH---H-HHCCCCEEEEE
T ss_conf 90049999999---9-96456638998
No 22
>PF05079 DUF680: Protein of unknown function (DUF680); InterPro: IPR007771 This family contains uncharacterised proteins which seem to be found exclusively in Mesorhizobium loti.
Probab=39.61 E-value=7.3 Score=15.10 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=7.9
Q ss_pred CCEEEHHHHHHHH
Q ss_conf 9502078999999
Q T0518 1 MKKVFYPLACCCL 13 (288)
Q Consensus 1 Mk~~~~~l~~~~l 13 (288)
||||.+++++.++
T Consensus 1 MkKi~L~aaA~l~ 13 (75)
T PF05079_consen 1 MKKIALTAAALLL 13 (75)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9169999999999
No 23
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function . The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C-terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity . Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation . The structure of the laminin-G domain has been predicted to resemble that of pentraxin . Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan . Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 2h0b_C 2r16_A 3bop_A 3b3q_E 3biw_G 3bod_A 2r1d_G 1c4r_E 2vh8_D 2r1b_B ....
Probab=38.69 E-value=7.9 Score=14.89 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEEEECCEEEEEECCEEEEEECCCC
Q ss_conf 8888746899999989689988998898202322
Q T0518 199 KPFGEWNKAKIMVYKGTVVHGQNDENVLEYHLWT 232 (288)
Q Consensus 199 ~p~geWN~~~I~~~g~~i~~~iNG~~v~~~~~~~ 232 (288)
...|+|++..|...+..++..+||..........
T Consensus 51 ~~dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~ 84 (128)
T PF02210_consen 51 LNDGQWHHVAITRNGNNVTLYVDGSPVESSTSTS 84 (128)
T ss_dssp TTSSSEEEEEEEEETTEEEEEETTSEEEEESSST
T ss_pred CCCCCEEEEEEEEECCEEEEEECCEEEEEEECCC
T ss_conf 3687357999999182999999998726770786
No 24
>PF06474 MLTD_N: MLTD_N; InterPro: IPR010511 This entry comprises the N-terminal domain of membrane-bound lytic murein transglycosylase D .
Probab=36.88 E-value=3 Score=17.39 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=10.7
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 95020789999999998752256545665
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKKANA 29 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~~~~ 29 (288)
||.+++.+++. +++.|.+......
T Consensus 1 m~~~~~l~~~l-----lLaGCqs~~~~~~ 24 (95)
T PF06474_consen 1 MRFLAVLALAL-----LLAGCQSTPQPSP 24 (95)
T ss_pred CHHHHHHHHHH-----HHHHCCCCCCCCC
T ss_conf 92999999999-----9984679999998
No 25
>PF11153 DUF2931: Protein of unknown function (DUF2931)
Probab=36.39 E-value=7.7 Score=14.95 Aligned_cols=10 Identities=30% Similarity=0.092 Sum_probs=8.8
Q ss_pred CCEEEEEECC
Q ss_conf 8968998899
Q T0518 213 KGTVVHGQND 222 (288)
Q Consensus 213 g~~i~~~iNG 222 (288)
++.+.+||+|
T Consensus 153 gG~V~VWL~g 162 (216)
T PF11153_consen 153 GGKVVVWLMG 162 (216)
T ss_pred CCEEEEEECC
T ss_conf 9889999748
No 26
>PF01441 Lipoprotein_6: Lipoprotein This Pfam family is a subset of the Prosite family.; InterPro: IPR001800 Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens . They are predominantly found in the Spirochaetaceae.; GO: 0006952 defense response, 0009279 cell outer membrane; PDB: 1f1m_C 1g5z_A 2ga0_E 1yjg_E 1ggq_C.
Probab=30.90 E-value=4.2 Score=16.52 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=16.8
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9502078999999999875225654566
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKKAN 28 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~~~ 28 (288)
|||.. |.+.+|.+.+|++|.+.-...
T Consensus 1 Mkk~t--lSaIlMtLflfisCNNsG~~~ 26 (210)
T PF01441_consen 1 MKKNT--LSAILMTLFLFISCNNSGKEL 26 (210)
T ss_dssp ----------------------------
T ss_pred CCHHH--HHHHHHHHHHHHHCCCCCCCC
T ss_conf 95137--999999999999637888766
No 27
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections . The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain .; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2v73_B 2v72_A 2vw0_A 2jkb_A 2vw1_A 2vw2_A 4sli_A 2sli_A 1sli_A 3sli_A ....
Probab=28.51 E-value=12 Score=13.89 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=24.0
Q ss_pred CCCCCCEEEEEEEE--CCEEEEEECCEEEEEEC
Q ss_conf 88887468999999--89689988998898202
Q T0518 199 KPFGEWNKAKIMVY--KGTVVHGQNDENVLEYH 229 (288)
Q Consensus 199 ~p~geWN~~~I~~~--g~~i~~~iNG~~v~~~~ 229 (288)
..-..||++.++.. +..++.++||+.+....
T Consensus 100 ~~~~~~~tv~~v~d~~~~~~klYvNG~ll~~~~ 132 (190)
T PF02973_consen 100 KNNVVWNTVAFVADKKNKTYKLYVNGKLLATFS 132 (190)
T ss_dssp ---B--EEEEEEEETTTTEEEEEE---EEEEEE
T ss_pred CCCCEEEEEEEEEECCCCEEEEEECCEEEEEEC
T ss_conf 476168999999987898799999898888640
No 28
>PF09710 Trep_dent_lipo: Treponema clustered lipoprotein (Trep_dent_lipo)
Probab=28.09 E-value=12 Score=13.84 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=13.0
Q ss_pred EEHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 207899999999987522565456654321
Q T0518 4 VFYPLACCCLAAGVFASCGGQKKANAQEEP 33 (288)
Q Consensus 4 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 33 (288)
+++.|++|+| +.||+.+-+.++++..
T Consensus 5 lIfILiLA~l----LFSCSKEiKE~~ee~~ 30 (394)
T PF09710_consen 5 LIFILILAAL----LFSCSKEIKEQAEERK 30 (394)
T ss_pred EHHHHHHHHH----HHHHHHHHCCCCHHHC
T ss_conf 6179999999----9641365424524330
No 29
>PF09690 PYST-C1: Plasmodium yoelii subtelomeric region (PYST-C1)
Probab=27.79 E-value=12 Score=13.93 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=16.5
Q ss_pred CCEEEHHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 9502078999999999875225-6545
Q T0518 1 MKKVFYPLACCCLAAGVFASCG-GQKK 26 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~-~~~~ 26 (288)
|.|.+++|+|.+|-..++.+-. .+++
T Consensus 1 MnkrifslVci~lY~ll~V~i~cseqK 27 (86)
T PF09690_consen 1 MNKRIFSLVCIVLYILLAVSIHCSEQK 27 (86)
T ss_pred CCHHHHHHHHHHHHHHHHEEEEECCCC
T ss_conf 935799999999999986033332420
No 30
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.
Probab=27.45 E-value=8.7 Score=14.65 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=13.3
Q ss_pred CCEEEHHHHHHHHHHHHHHHC
Q ss_conf 950207899999999987522
Q T0518 1 MKKVFYPLACCCLAAGVFASC 21 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~ 21 (288)
||+++..+++.+|+++.+.+.
T Consensus 1 mKk~~~i~l~~~L~~~~l~Aa 21 (142)
T PF06518_consen 1 MKKAVSILLVSLLLASFLNAA 21 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 914799999999999986157
No 31
>PF09381 Porin_OmpG: Outer membrane protein G (OmpG); PDB: 2iwv_B 2iww_B 2f1c_X 2jqy_A.
Probab=25.74 E-value=6.8 Score=15.29 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=16.3
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 950207899999999987522565456
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQKKA 27 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~~~ 27 (288)
||++ |.+++|++|.-.+|+.++..
T Consensus 1 m~~l---l~~~a~~~cag~~~aqa~e~ 24 (301)
T PF09381_consen 1 MSTL---LPSTALVMCAGMACAQAPES 24 (301)
T ss_dssp --------------------------S
T ss_pred CCCH---HHHHHHHHHHCHHHHCCCCC
T ss_conf 9422---32549998424153165102
No 32
>PF11777 DUF3316: Protein of unknown function (DUF3316)
Probab=22.81 E-value=14 Score=13.37 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=10.0
Q ss_pred CCCCEEEECCEEEEC
Q ss_conf 887458878889970
Q T0518 81 VPTKWTIEDGCIKFN 95 (288)
Q Consensus 81 ~~~~W~VedG~l~~~ 95 (288)
.+...++.||.+.++
T Consensus 73 ~~~s~~l~d~~VsVq 87 (114)
T PF11777_consen 73 DMRSIKLDDGNVSVQ 87 (114)
T ss_pred CEEEEEECCCEEEEE
T ss_conf 301589717568601
No 33
>PF03304 Mlp: Mlp lipoprotein family; InterPro: IPR004983 The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species . This family were previously known as 2.9 lipoprotein genes . These surface expressed genes may represent new candidate vaccinogens for Lyme disease . Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=21.60 E-value=16 Score=13.11 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=12.6
Q ss_pred CCEEEHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9502078999999999875225654
Q T0518 1 MKKVFYPLACCCLAAGVFASCGGQK 25 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~~~~~~~~ 25 (288)
||.|.+.+ ||++.++.+|.+..
T Consensus 1 mKiinilf---cl~lllL~~Cn~nd 22 (181)
T PF03304_consen 1 MKIINILF---CLFLLLLNSCNSND 22 (181)
T ss_pred CCEEHHHH---HHHHHHHHCCCCCC
T ss_conf 94405899---99999994767688
No 34
>PF11853 DUF3373: Protein of unknown function (DUF3373)
Probab=21.52 E-value=14 Score=13.47 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=12.5
Q ss_pred CCEEEHHHHHHHH-HHHHHHHCC
Q ss_conf 9502078999999-999875225
Q T0518 1 MKKVFYPLACCCL-AAGVFASCG 22 (288)
Q Consensus 1 Mk~~~~~l~~~~l-~~~~~~~~~ 22 (288)
||+++..+++++| .++++....
T Consensus 1 MK~~~~l~l~aall~~s~~~~a~ 23 (489)
T PF11853_consen 1 MKKLISLILAAALLAASLFAKAS 23 (489)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 92289999999999742433133
No 35
>PF12099 DUF3575: Protein of unknown function (DUF3575)
Probab=21.42 E-value=16 Score=13.08 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=16.0
Q ss_pred CCCCCCEEEEEEEE-ECCCCCCCEEEE
Q ss_conf 87336479999998-548998750466
Q T0518 113 AHKFKNFELELEWK-VAKGSNSGILYL 138 (288)
Q Consensus 113 ~~~f~dF~L~~E~k-~~~~~NSGi~~~ 138 (288)
+..+..+.+..|+| +-...-.|-|+-
T Consensus 70 ~~~~k~~~vqpE~RYW~~~~~~G~F~G 96 (189)
T PF12099_consen 70 NRKWKHWLVQPEVRYWFCERFNGHFLG 96 (189)
T ss_pred CCEEEEEEECCEEEEEECCCCCCEEEE
T ss_conf 824899983510488751656645898
No 36
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=20.94 E-value=14 Score=13.41 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=10.2
Q ss_pred CCEEEHHHHHHHHHHHHH
Q ss_conf 950207899999999987
Q T0518 1 MKKVFYPLACCCLAAGVF 18 (288)
Q Consensus 1 Mk~~~~~l~~~~l~~~~~ 18 (288)
|||..+.+++++++++.+
T Consensus 1 Mkk~~l~~~l~~la~~al 18 (75)
T PF06649_consen 1 MKKFLLAVALLLLAAPAL 18 (75)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 935699999999856454
No 37
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.73 E-value=17 Score=13.00 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=9.5
Q ss_pred CCEEEHHHHHHHHH
Q ss_conf 95020789999999
Q T0518 1 MKKVFYPLACCCLA 14 (288)
Q Consensus 1 Mk~~~~~l~~~~l~ 14 (288)
|+++++++++++.+
T Consensus 1 Mn~~Sv~VLvaLVL 14 (71)
T PF04202_consen 1 MNNFSVSVLVALVL 14 (71)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 97401469999998
Done!