Query T0520 3MR7, Silicibacter pomeroyi, 189 residues
Match_columns 189
No_of_seqs 121 out of 2984
Neff 8.0
Searched_HMMs 22458
Date Fri May 21 18:04:34 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0520.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0520.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y10_A Hypothetical protein RV 100.0 3.8E-44 0 264.2 15.7 169 3-178 211-382 (407)
2 1ybt_A Hydrolase, alpha/beta h 100.0 1.6E-43 0 260.6 16.7 166 1-175 11-180 (184)
3 1wc3_A Adenylate cyclase; solu 100.0 1.7E-40 7E-45 243.8 19.7 170 2-174 22-216 (219)
4 1ab8_A Adenylyl cyclase; lyase 100.0 4.3E-40 2E-44 241.5 15.0 171 4-178 11-213 (220)
5 2w01_A Adenylate cyclase; guan 100.0 1.2E-38 5.4E-43 233.4 21.2 172 2-175 9-197 (208)
6 3et6_A Soluble guanylyl cyclas 100.0 1.1E-39 5E-44 239.2 15.9 167 4-173 6-187 (190)
7 1azs_A VC1; complex (lyase/hyd 100.0 3.3E-40 1.5E-44 242.1 12.8 171 4-176 31-215 (220)
8 1fx2_A Receptor-type adenylate 100.0 5.4E-39 2.4E-43 235.4 16.2 175 4-179 9-225 (235)
9 2wz1_A Guanylate cyclase solub 100.0 8.8E-39 3.9E-43 234.2 16.1 171 3-176 7-203 (219)
10 1yk9_A Adenylate cyclase; beta 100.0 1.5E-39 6.6E-44 238.5 2.0 167 3-174 5-186 (204)
11 1w25_A Stalked-cell differenti 97.3 0.0013 5.8E-08 38.0 8.2 96 6-102 318-418 (459)
12 3bre_A Probable two-component 97.1 0.0014 6.4E-08 37.8 7.6 80 6-85 201-282 (358)
13 3ezu_A Ggdef domain protein; m 96.9 0.0032 1.4E-07 35.9 7.2 97 6-106 212-310 (342)
14 3ign_A Diguanylate cyclase; gg 96.2 0.016 7.3E-07 31.9 7.3 129 5-138 37-172 (177)
15 3i5c_A Fusion of general contr 96.2 0.026 1.2E-06 30.8 8.2 82 5-86 59-142 (206)
16 3icl_A EAL/ggdef domain protei 95.1 0.032 1.4E-06 30.3 5.4 74 5-79 28-104 (171)
17 3hva_A Protein FIMX; ggdef dig 94.8 0.15 6.7E-06 26.5 8.5 99 5-107 42-142 (177)
18 2qv6_A MJ0145, GTP cyclohydrol 93.7 0.26 1.2E-05 25.2 10.1 60 7-66 131-191 (268)
19 3hvw_A Diguanylate-cyclase (DG 88.3 0.57 2.5E-05 23.3 4.7 73 7-81 27-104 (176)
20 3hvb_A Protein FIMX; EAL phosp 58.3 1.6 7.1E-05 20.8 0.0 78 4-82 41-120 (437)
21 1ufw_A Synaptojanin 2; RNP dom 34.4 19 0.00085 14.8 3.9 57 9-74 17-75 (95)
22 2dfa_A Hypothetical UPF0271 pr 24.0 29 0.0013 13.8 3.1 72 12-87 65-138 (250)
23 2dnr_A Synaptojanin-1; RRM dom 21.7 33 0.0015 13.5 5.1 30 44-73 35-65 (91)
24 2fiu_A Conserved hypothetical 20.4 35 0.0015 13.3 5.4 48 35-82 21-81 (99)
No 1
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=100.00 E-value=3.8e-44 Score=264.19 Aligned_cols=169 Identities=23% Similarity=0.333 Sum_probs=150.9
Q ss_pred CCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 65168999996233547686349998999999999999999998719789741045502454204688999999988999
Q T0520 3 AERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEIQQAMQ 82 (189)
Q Consensus 3 ~Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~~~Av~~a~~~~~~l~ 82 (189)
.|+|++||+|+||+|||+++++++++.+..+++.|...+..++ +++|.++|++||++|++|+.|.+|++||++|++.+.
T Consensus 211 p~~R~vtVlF~DIvgfT~ls~~l~~~~l~~ll~~f~~~~~~i~-~~~G~vvK~iGD~vmavF~~p~~A~~~Al~l~~~~~ 289 (407)
T 1y10_A 211 PGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLT-APPVWFIKTIGDAVMLVCPDPAPLLDTVLKLVEVVD 289 (407)
T ss_dssp TTCEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHC-CTTCEEEEEETTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHCCEEEEEECCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 8754799999980685899886999999999999999999999-809879987276888817997999999999899998
Q ss_pred HHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHC---CCCEEECCCEEEC
Q ss_conf 9987303667421023777532787413014531017999984189987998668999874321---7142664848744
Q T0520 83 QREEDTPRKERIQYRIGINIGDIVLEDGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRV---SEPFTDLGLQKVK 159 (189)
Q Consensus 83 ~~~~~~~~~~~l~~riGih~G~v~~~~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~---~~~~~~~g~~~lk 159 (189)
.. ...+++|||||+|+|+...+|++|++||+|+||++.|+||+|+||+++++++.+.. .|.|+++|.+.||
T Consensus 290 ~~------~~~~~lRIGIhtG~Vv~~~~dv~G~~VN~AaRLes~A~pg~IlvS~~t~~~L~~~~~~~~f~~~~~g~~~LK 363 (407)
T 1y10_A 290 TD------NNFPRLRAGVASGMAVSRAGDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSFAGPRRLR 363 (407)
T ss_dssp TC------TTSCCEEEEEEEEEEEEETTEEEEHHHHHHHHHHHHCCTTCEEEEHHHHHSCCCC---CCCEEEEEEEECCT
T ss_pred HC------CCCCCEEEEEEEEEEEEECCCEECCHHHHHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCEEEEECCCEECC
T ss_conf 32------678533430044124843796788788899999704799959988999999842233464368877868747
Q ss_pred CCCCCEEEEEEECCCCCCC
Q ss_conf 6788458999503666566
Q T0520 160 NITRPIRVWQWVPDADRDQ 178 (189)
Q Consensus 160 G~~~p~~vy~v~~~~~~~~ 178 (189)
|+.+|+++|++.+...++.
T Consensus 364 G~~~pv~vy~v~r~~~~~~ 382 (407)
T 1y10_A 364 GIRGDVRLFRVRRGATRTG 382 (407)
T ss_dssp TCCSCEEEEEEEC------
T ss_pred CCCCCEEEEEEECCCCCCC
T ss_conf 9888569999805877777
No 2
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis CDC1551} PDB: 1ybu_A*
Probab=100.00 E-value=1.6e-43 Score=260.64 Aligned_cols=166 Identities=29% Similarity=0.444 Sum_probs=153.5
Q ss_pred CCCCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 98651689999962335476863499989999999999999999987197897410455024542046889999999889
Q T0520 1 SNAERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEIQQA 80 (189)
Q Consensus 1 ~~~Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~~~Av~~a~~~~~~ 80 (189)
+.+|||.+||||+||+|||+++++++++.+..+++.|+..+.+++.+|||+++|++||++|++|++|.+|++||+++++.
T Consensus 11 ~~~er~~~tvlf~Di~g~T~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~~~k~~GD~~la~F~~~~~Av~~a~~i~~~ 90 (184)
T 1ybt_A 11 GSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSPSAAIACADDIVDA 90 (184)
T ss_dssp --CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 87618899999998427389987699999999999999999998763121443203531567750244330046777665
Q ss_pred HHHHHHHCCCCCCCCEEEEEEEEEEEEE----CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCEEECCCE
Q ss_conf 9999873036674210237775327874----130145310179999841899879986689998743217142664848
Q T0520 81 MQQREEDTPRKERIQYRIGINIGDIVLE----DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQ 156 (189)
Q Consensus 81 l~~~~~~~~~~~~l~~riGih~G~v~~~----~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~~~~~~~g~~ 156 (189)
+.++ ++++|||||+|+++.+ .++++|++||+|+||+++|+|++|+||+++|+++.+. .+.|.++|++
T Consensus 91 ~~~~--------~~~~riGih~G~v~~~~~~~~~~~~G~~VN~AaRl~~~a~~~~IlvS~~v~~~~~~~-~~~~~~~g~~ 161 (184)
T 1ybt_A 91 VAAL--------GIEVRIGIHAGEVEVRDASHGTDVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGS-RHRFAERGEQ 161 (184)
T ss_dssp HHTT--------TCCEEEEEEEEEEEEEECSSCEEEESHHHHHHHHHHHHSCTTCEEEEHHHHHHTTTS-SCCEEEEEEE
T ss_pred HHCC--------CCCCCCCCCCCEEEEECCCCCCCCCCCEEEHHHHHHHCCCCCEEEECHHHHHHHCCC-CCEEEEECCE
T ss_conf 4111--------223233652103997026778764487055878987047899799889999986178-8559990858
Q ss_pred EECCCCCCEEEEEEECCCC
Q ss_conf 7446788458999503666
Q T0520 157 KVKNITRPIRVWQWVPDAD 175 (189)
Q Consensus 157 ~lkG~~~p~~vy~v~~~~~ 175 (189)
.|||+.+|+.+|++.++..
T Consensus 162 ~lKG~~~~~~~y~v~~~~~ 180 (184)
T 1ybt_A 162 ELKGVPGRWRLCVLMRDDA 180 (184)
T ss_dssp CCTTSSSCEEEEEECCCC-
T ss_pred ECCCCCCCEEEEEEECCCC
T ss_conf 8768587889999937888
No 3
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=100.00 E-value=1.7e-40 Score=243.75 Aligned_cols=170 Identities=25% Similarity=0.372 Sum_probs=148.3
Q ss_pred CCCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC---------HHHHHH
Q ss_conf 86516899999623354768634999899999999999999999871978974104550245420---------468899
Q T0520 2 NAERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT---------AQAALR 72 (189)
Q Consensus 2 ~~Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~---------~~~Av~ 72 (189)
.+|+|++||||+||+|||++++.++++.+..+++.|+..+.+++.+|||+++|++||++|++|+. +.+|+.
T Consensus 22 ~pe~r~vtvlF~DI~gft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~gG~v~k~~GD~~l~~f~~~~~~~~~~~~~~a~~ 101 (219)
T 1wc3_A 22 RPEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAIA 101 (219)
T ss_dssp CCEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHHH
T ss_pred CCCEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 87317999999993773798886999999999999999998877640001303540035676147642222102456789
Q ss_pred HHHHHHHHHHHHHHHCC--------CCCCCCEEEEEEEEEEEEE--------CCCCCCCCCHHHHHHHHCCCCCEEEECH
Q ss_conf 99999889999987303--------6674210237775327874--------1301453101799998418998799866
Q T0520 73 CALEIQQAMQQREEDTP--------RKERIQYRIGINIGDIVLE--------DGDIFGDAVNVAARLEAISEPGAICVSD 136 (189)
Q Consensus 73 ~a~~~~~~l~~~~~~~~--------~~~~l~~riGih~G~v~~~--------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~ 136 (189)
++..++..+...+.... ..+++++|||||+|+++.+ +|+++|++||+|+||++++++++|+||+
T Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~riGI~~G~v~~g~vG~~~r~~y~v~G~~VN~AaRLe~~a~~~~IlvS~ 181 (219)
T 1wc3_A 102 TARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSA 181 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEEEEEEEEEEEEETTEEEEEEESHHHHHHHHHHHHSCTTEEEEEH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEH
T ss_conf 99998887652133321111246678887689997665113125656133333333553266889998436799899818
Q ss_pred HHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEECCC
Q ss_conf 89998743217142664848744678845899950366
Q T0520 137 IVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPDA 174 (189)
Q Consensus 137 ~~~~~i~~~~~~~~~~~g~~~lkG~~~p~~vy~v~~~~ 174 (189)
.+|+++.+ +.+.++|.+.|||+.+|+.+|++.|+.
T Consensus 182 ~~~~~l~~---~~~~~~g~i~lKG~~epv~~y~v~p~~ 216 (219)
T 1wc3_A 182 MVAQYVPD---EEIIKREFLELKGIDEPVMTCVINPNM 216 (219)
T ss_dssp HHHTTSCG---GGEEEEEEECCTTCSSCEEEEEECSCC
T ss_pred HHHHHCCC---CEEEEECCEEECCCCCEEEEEEECCCC
T ss_conf 99976388---706896779947988468999988754
No 4
>1ab8_A Adenylyl cyclase; lyase, plasmid, complex (transferase/inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 1cul_B*
Probab=100.00 E-value=4.3e-40 Score=241.55 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=143.6
Q ss_pred CEEEEEEEEEECCCHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCEEEEEC-----------
Q ss_conf 51689999962335476863499----989999999999999999987---197897410455024542-----------
Q T0520 4 ERRLCAILAADMAGYSRLMERNE----TDVLNRQKLYRRELIDPAIAQ---AGGQIVKTTGDGMLARFD----------- 65 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~----~~~~~~~~~~~~~~~~~~i~~---~gG~i~k~~GDg~la~F~----------- 65 (189)
++.++||||+||+|||.++++++ ++++..+++.++..++.++.+ |||+++|++||++|++|+
T Consensus 11 ~~~~vtVlF~DI~gFT~lse~~~~~~~~~~~v~~Ln~~~~~fd~~i~~~~~~gg~~~k~iGD~~ma~fG~~~~~~~~ha~ 90 (220)
T 1ab8_A 11 SYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQ 90 (220)
T ss_dssp EEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCCC----
T ss_pred CCCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCHHHH
T ss_conf 05878999987588638897468757999999999999999999999987479689998168489996588887411343
Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCE
Q ss_conf -------0468899999998899999873036674210237775327874-------13014531017999984189987
Q T0520 66 -------TAQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGA 131 (189)
Q Consensus 66 -------~~~~Av~~a~~~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~ 131 (189)
++.++++++++|++.+.+.+.. ...++++|||||+|+|+.| +|+++|++||+|+|||+.+.|++
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~rIGIhtG~v~~Gv~g~~r~~y~v~Gd~VN~AaRLes~a~~~~ 168 (220)
T 1ab8_A 91 EPERQYMHIGTMVEFAYALVGKLDAINKH--SFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDK 168 (220)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHTT--TTCCCCCEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEEEEEEEEEEECCCCCCCEECCHHHHHHHHHHHCCCCCE
T ss_conf 36668999999999999999999986304--7998048997544028999704775134142658999999971689997
Q ss_pred EEECHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEECCCCCCC
Q ss_conf 99866899987432171426648487446788458999503666566
Q T0520 132 ICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPDADRDQ 178 (189)
Q Consensus 132 Ilvs~~~~~~i~~~~~~~~~~~g~~~lkG~~~p~~vy~v~~~~~~~~ 178 (189)
|+||+++|+++++. .|.|+++|++.|||++ ++.+|.|.+...+..
T Consensus 169 I~iS~~t~~~l~~~-~f~~~~~g~i~lKGkg-~~~ty~l~~~~~~~~ 213 (220)
T 1ab8_A 169 IQVTEETSLILQTL-GYTCTCRGIINVKGKG-DLKTYFVNTEMSRSL 213 (220)
T ss_dssp EEECHHHHHHHHHH-TCCCCC----------------CCC-------
T ss_pred EEECHHHHHHHHCC-CEEEEEECCEEECCCC-EEEEEEEECCCCCCC
T ss_conf 99889999987438-8279994868852776-589999931367887
No 5
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=100.00 E-value=1.2e-38 Score=233.43 Aligned_cols=172 Identities=24% Similarity=0.414 Sum_probs=150.7
Q ss_pred CCCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC-------HHHHHHHH
Q ss_conf 86516899999623354768634999899999999999999999871978974104550245420-------46889999
Q T0520 2 NAERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT-------AQAALRCA 74 (189)
Q Consensus 2 ~~Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~-------~~~Av~~a 74 (189)
.||||++||||+||+|||.++++++++.+..+++.++..+.+++.+|+|.+.+++||+++++|+. ...++.|+
T Consensus 9 ~ge~r~vtilf~Di~~fT~l~e~l~~~~~~~~l~~~~~~~~~~i~~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~~~~~~ 88 (208)
T 2w01_A 9 GGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQDDALRAVACG 88 (208)
T ss_dssp CCEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCTTHHHHHHHHH
T ss_pred CCEEEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98189999999981683498764999999999999999999999973986689831247898288765402688999999
Q ss_pred HHHHHHHHHHHHHCC--CCCCCCEEEEEEEEEEEEE--------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 999889999987303--6674210237775327874--------130145310179999841899879986689998743
Q T0520 75 LEIQQAMQQREEDTP--RKERIQYRIGINIGDIVLE--------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQD 144 (189)
Q Consensus 75 ~~~~~~l~~~~~~~~--~~~~l~~riGih~G~v~~~--------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~ 144 (189)
+.+...+...+.... ...++.+|+|||+|+++.+ +|+++|++||+|+||++.|++++|+||+++|+++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~riGI~~G~v~~g~~G~~~r~~~~~~G~~Vn~AarL~~~a~~~~IlvS~~v~~~l~~ 168 (208)
T 2w01_A 89 VEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAGD 168 (208)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEEEEECSSCEEEEEESHHHHHHHHHHHTCCTTCEEEEHHHHHHHCT
T ss_pred HHHHHHHHHHCCHHCCCCCCCEEEECCEEECCCEEEECCCCCCCCCEEECHHHHHHHHHHHCCCCCEEEECHHHHHHHCC
T ss_conf 99999986420000047886345642201227706752775413411338799999999815799979999999986236
Q ss_pred HCCCCEEECCCEEECCCCCCEEEEEEECCCC
Q ss_conf 2171426648487446788458999503666
Q T0520 145 RVSEPFTDLGLQKVKNITRPIRVWQWVPDAD 175 (189)
Q Consensus 145 ~~~~~~~~~g~~~lkG~~~p~~vy~v~~~~~ 175 (189)
. +.++.+|.+.|||+.+|+.+|+++....
T Consensus 169 ~--~~~~~~g~v~lkG~~~pv~vy~v~~~~~ 197 (208)
T 2w01_A 169 R--VHVNGNRTVQPKGVKDPVVIWDVAGVGE 197 (208)
T ss_dssp T--EEEEEEEEECCTTCSSCEEEEEEEEECT
T ss_pred C--EEEEECCEEEECCCCCEEEEEEECCCCC
T ss_conf 5--3788713598357785389999836798
No 6
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=100.00 E-value=1.1e-39 Score=239.19 Aligned_cols=167 Identities=23% Similarity=0.320 Sum_probs=147.0
Q ss_pred CEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEE-EEEECCCEEEEEC-------CHHHHHHHHH
Q ss_conf 5168999996233547686349998999999999999999998719789-7410455024542-------0468899999
Q T0520 4 ERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQI-VKTTGDGMLARFD-------TAQAALRCAL 75 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i-~k~~GDg~la~F~-------~~~~Av~~a~ 75 (189)
|+|++||||+||+|||.++++++++.+..+++.|+..+.+++.+|+|.+ +|++||++|++|+ ++.+|++|++
T Consensus 6 ~~~~vtilF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~G~~~ik~~GD~~~~~fg~~~~~~~~~~~a~~~a~ 85 (190)
T 3et6_A 6 EHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLEFAL 85 (190)
T ss_dssp EEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 57979999999078169888699999999999999985577774133498998612267875023100467889998888
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC
Q ss_conf 998899999873036674210237775327874-------1301453101799998418998799866899987432171
Q T0520 76 EIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSE 148 (189)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~~ 148 (189)
+|++.+...+.. ...++.+|||||+|+++.+ +|+++|++||+|+||++.|++++|+||+.+|+.++....+
T Consensus 86 ~~~~~~~~~~~~--~~~~l~~riGih~G~v~~g~~g~~~~~y~v~G~~Vn~A~rle~~a~~~~I~iS~~~~~~l~~~~~~ 163 (190)
T 3et6_A 86 RMHEEASRVASS--LGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERF 163 (190)
T ss_dssp HHHHHHHTSCCC-----CCCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSCTTSEEEEHHHHHHCSCGGGT
T ss_pred HHHHHHHHHHHH--CCCCEEEEEECCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCE
T ss_conf 999999987651--388647886113426998321576146799734689999998428982799749999986178977
Q ss_pred CEEECCCEEECCCCCCEEEEEEECC
Q ss_conf 4266484874467884589995036
Q T0520 149 PFTDLGLQKVKNITRPIRVWQWVPD 173 (189)
Q Consensus 149 ~~~~~g~~~lkG~~~p~~vy~v~~~ 173 (189)
.++++|.+.|||++ ++++|++.|.
T Consensus 164 ~~~~~g~~~lkGk~-~v~~y~l~~~ 187 (190)
T 3et6_A 164 EIRERGNITVKGKG-TMRTYLLSPL 187 (190)
T ss_dssp CCCCEEEECCSSSS-CEEEEEECCC
T ss_pred EEEEECCEEEECCC-EEEEEEEECC
T ss_conf 99994749971677-0899999241
No 7
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=100.00 E-value=3.3e-40 Score=242.13 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=153.9
Q ss_pred CEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC-------CHHHHHHHHHH
Q ss_conf 51689999962335476863499989999999999999999987197897410455024542-------04688999999
Q T0520 4 ERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD-------TAQAALRCALE 76 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~-------~~~~Av~~a~~ 76 (189)
+.+.+||||+||+|||+++++++++.+..+++.|+..+.+++.+|||+++|++||++|++|+ ++.+|+.++++
T Consensus 31 ~~~~vtVlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~i~k~~GD~~~a~f~~~~~~~d~~~~av~~a~~ 110 (220)
T 1azs_A 31 KHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMD 110 (220)
T ss_dssp EEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 07978999998387489988599999999999999999999998699899995544788418987742189999998774
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCC
Q ss_conf 98899999873036674210237775327874-------13014531017999984189987998668999874321714
Q T0520 77 IQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEP 149 (189)
Q Consensus 77 ~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~~~ 149 (189)
+++.+.+.+.. ...++++|||||+|+++.+ +|+++|++||+|+||++.|+|++|+||+++|+++++.+++.
T Consensus 111 ~~~~~~~~~~~--~~~~l~lriGIhtG~v~~g~~G~~~~~~~v~G~~Vn~A~rL~~~a~~~~IlvSe~~~~~l~~~~~~~ 188 (220)
T 1azs_A 111 MIEAISLVREM--TGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVE 188 (220)
T ss_dssp HHHHHHHHHHH--HCSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTTCSCEE
T ss_pred HHHHHHHHCCC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCEEE
T ss_conf 89998764025--6987010233343786354516776355416719999999980479997998999999743684488
Q ss_pred EEECCCEEECCCCCCEEEEEEECCCCC
Q ss_conf 266484874467884589995036665
Q T0520 150 FTDLGLQKVKNITRPIRVWQWVPDADR 176 (189)
Q Consensus 150 ~~~~g~~~lkG~~~p~~vy~v~~~~~~ 176 (189)
++..|+..+||+.+|+.+|++.+....
T Consensus 189 ~~~~g~~~lkgk~~~i~~y~v~~~~~~ 215 (220)
T 1azs_A 189 PGCGGERNAYLKEHSIETFLILRCTQK 215 (220)
T ss_dssp ECCGGGTCHHHHHTTCCCEEEC-----
T ss_pred ECCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 654735998524576799998247866
No 8
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=100.00 E-value=5.4e-39 Score=235.40 Aligned_cols=175 Identities=18% Similarity=0.272 Sum_probs=146.5
Q ss_pred CEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 51689999962335476863499989999999999999999987197897410455024542046889999999889999
Q T0520 4 ERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEIQQAMQQ 83 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~ 83 (189)
.++++||||+||+|||.+++..+ +.+..+++.|+..+.+++.+|||+++|++||++|++|+.+.++..++.+++..+..
T Consensus 9 ~~~~vtvlF~Di~gfT~l~~~~p-~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~ma~f~~~~~~~~~a~~~~~~~~~ 87 (235)
T 1fx2_A 9 PTDPVTLIFTDIESSTALWAAHP-DLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFAAVQLAQELQLCFLH 87 (235)
T ss_dssp TTSCEEEEEEEETTHHHHHHHCT-TTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88859999996588799998699-99999999999999999998399899975880489608986116799999999998
Q ss_pred HHHH----------------------------------CCCCCCCCEEEEEEEEEEEEE------CCCCCCCCCHHHHHH
Q ss_conf 9873----------------------------------036674210237775327874------130145310179999
Q T0520 84 REED----------------------------------TPRKERIQYRIGINIGDIVLE------DGDIFGDAVNVAARL 123 (189)
Q Consensus 84 ~~~~----------------------------------~~~~~~l~~riGih~G~v~~~------~~~~~G~~Vn~AaRl 123 (189)
..+. .....++++|||||+|+|+.+ .++++|++||+|+||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~riGIh~G~v~~~~~~~~~~~~~~G~~Vn~AaRl 167 (235)
T 1fx2_A 88 HDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTKGYDYYGRTPNMAART 167 (235)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTTSSSEEEESHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCCEECHHHHHHHHH
T ss_conf 88788877766567899999999987887776666654135888538999998999996045541466077999999999
Q ss_pred HHCCCCCEEEECHHHHHHHHHH--CCCCEEECCCEEECCCCCCEEEEEEECCCCCCCC
Q ss_conf 8418998799866899987432--1714266484874467884589995036665667
Q T0520 124 EAISEPGAICVSDIVHQITQDR--VSEPFTDLGLQKVKNITRPIRVWQWVPDADRDQS 179 (189)
Q Consensus 124 ~~~a~~~~Ilvs~~~~~~i~~~--~~~~~~~~g~~~lkG~~~p~~vy~v~~~~~~~~~ 179 (189)
++.|.+++|+||+++|+.+... ..+.++++|.+.|||+.+|+.+|+|.....+...
T Consensus 168 es~a~~g~IlvS~~~~~~l~~~~~~~f~~~~~g~~~lKG~~~~v~~y~v~~~~~~~~~ 225 (235)
T 1fx2_A 168 ESVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNTVPSRNFA 225 (235)
T ss_dssp HHTCCTTCEEEEHHHHHTSCHHHHHTCCEEEEEEECCTTCSSCEEEEEECCSTTCCCC
T ss_pred HHCCCCCEEEECHHHHHHHHHHCCCCEEEEECCEEEECCCCCCEEEEEEECCCCCCHH
T ss_conf 8248998799859999998762167446898253985785871899999143874366
No 9
>2wz1_A Guanylate cyclase soluble subunit beta-1; alternative splicing, lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-binding, GUCY1B3; 1.63A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=234.20 Aligned_cols=171 Identities=22% Similarity=0.267 Sum_probs=141.8
Q ss_pred CCE-EEEEEEEEECCCHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCEEEEEC-------CH
Q ss_conf 651-6899999623354768634999----899999999999999999871---97897410455024542-------04
Q T0520 3 AER-RLCAILAADMAGYSRLMERNET----DVLNRQKLYRRELIDPAIAQA---GGQIVKTTGDGMLARFD-------TA 67 (189)
Q Consensus 3 ~Er-r~~tvlf~Di~~~t~l~~~~~~----~~~~~~~~~~~~~~~~~i~~~---gG~i~k~~GDg~la~F~-------~~ 67 (189)
.|| .++||||+||+|||.+++++++ ..+..+++.++..+..++..+ +|.++|++||++|++|+ ++
T Consensus 7 ~~~~~~vtvlF~Di~gfT~l~e~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~g~~ik~~GD~~ma~f~~p~~~~~~a 86 (219)
T 2wz1_A 7 AKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHA 86 (219)
T ss_dssp CEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCTTHH
T ss_pred CCCCCCEEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCHHHHH
T ss_conf 83507689999982694799976797220999999999999999999987614552366320545550338985124689
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 68899999998899999873036674210237775327874-------13014531017999984189987998668999
Q T0520 68 QAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQ 140 (189)
Q Consensus 68 ~~Av~~a~~~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~ 140 (189)
.+|+++++++++.+.+.+ ....++++|||||+|+++.| +|+++|++||+|+||++.|+|++|+||+.+++
T Consensus 87 ~~a~~~a~~~~~~~~~~~---~~~~~l~~riGih~G~v~~g~vG~~~~~~~~~G~~VN~AaRle~~a~~~~IliS~~~~~ 163 (219)
T 2wz1_A 87 RSICHLALDMMEIAGQVQ---VDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYR 163 (219)
T ss_dssp HHHHHHHHHHHHHHTTCE---ETTEECCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSCTTSEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HCCCCEEEEEEEEEEEEEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf 999988898888765431---01211046320577568998852555455240578999999983477986998799999
Q ss_pred HHHHH----CCCCEEECCCEEECCCCCCEEEEEEECCCCC
Q ss_conf 87432----1714266484874467884589995036665
Q T0520 141 ITQDR----VSEPFTDLGLQKVKNITRPIRVWQWVPDADR 176 (189)
Q Consensus 141 ~i~~~----~~~~~~~~g~~~lkG~~~p~~vy~v~~~~~~ 176 (189)
++... ..+.|+++|++.|||+.+|+++|++......
T Consensus 164 ~l~~~~~~~~~f~~~~~g~v~lKG~~~pv~vy~l~~~~~~ 203 (219)
T 2wz1_A 164 CLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNTG 203 (219)
T ss_dssp HTTSTTTCCTTEEEEEEEEECCTTCSSCEEEEEEEESCCC
T ss_pred HHHHHHCCCCCEEEEEECCEEECCCCCCEEEEEEEECCCC
T ss_conf 9863431377358999483995389876799998023788
No 10
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.5e-39 Score=238.52 Aligned_cols=167 Identities=25% Similarity=0.351 Sum_probs=144.3
Q ss_pred CCE-EEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC-------CHHHHHHHH
Q ss_conf 651-689999962335476863499989999999999999999987197897410455024542-------046889999
Q T0520 3 AER-RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD-------TAQAALRCA 74 (189)
Q Consensus 3 ~Er-r~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~-------~~~~Av~~a 74 (189)
+|+ .++||||+||+|||+++++++++.+..+++.|+..+.+++.+|||+++|++||++|++|+ ++.+|++++
T Consensus 5 ~~~~~~vtilF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~~~fg~~~~~~~~~~~a~~~a 84 (204)
T 1yk9_A 5 ADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFA 84 (204)
T ss_dssp -CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHHTHH
T ss_pred CCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 65768589999972770598885999999999999999974433304763211100134440489720124678889888
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCC
Q ss_conf 9998899999873036674210237775327874-------130145310179999841899879986689998743217
Q T0520 75 LEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVS 147 (189)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~ 147 (189)
++|++.+++++.. ...++++|||||+|+++.+ +||++|++||+|+||++.+++++|+||+.+|+++++ .
T Consensus 85 ~~i~~~~~~~~~~--~~~~l~~riGIh~G~v~~g~~g~~~~~~~~~G~~Vn~AaRl~~~a~~~~IlvSe~~~~~l~~--~ 160 (204)
T 1yk9_A 85 LDMTNVAAQLKDP--RGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKD--D 160 (204)
T ss_dssp HHHHHHTTTCCSS--SCCCCCEEEEEEEECEEECCCCSSSCCCCEEEHHHHHTTHHHHSCSTTCEEBCHHHHHCCTT--C
T ss_pred HHHHHHHHHHHHC--CCCCCEEEEEEEEECCEECCCCCCCCCCCCEECHHHHHHHHHHCCCCCEEEECHHHHHHHCC--C
T ss_conf 8778876643320--28871078876430314413234323446353688888999734789769986999997358--9
Q ss_pred CCEEECCCEEECCCCCCEEEEEEECCC
Q ss_conf 142664848744678845899950366
Q T0520 148 EPFTDLGLQKVKNITRPIRVWQWVPDA 174 (189)
Q Consensus 148 ~~~~~~g~~~lkG~~~p~~vy~v~~~~ 174 (189)
+.|+++|++.|||+++ +++|++.+..
T Consensus 161 ~~~~~~g~~~lKG~~~-~~~y~l~~~~ 186 (204)
T 1yk9_A 161 FVLRERGHINVKGKGV-MRTWYLIGRK 186 (204)
T ss_dssp EEEEECCCCCCSSSSS-CCCCEEEEEE
T ss_pred CEEEEECCEEECCCCC-CEEEEEECCC
T ss_conf 3699948688648883-2799996535
No 11
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A*
Probab=97.25 E-value=0.0013 Score=38.01 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=67.9
Q ss_pred EEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCH--HHHHHHHHHHHHHHHH
Q ss_conf 68999996233547686349998999999999999999998719789741045502454204--6889999999889999
Q T0520 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTA--QAALRCALEIQQAMQQ 83 (189)
Q Consensus 6 r~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~--~~Av~~a~~~~~~l~~ 83 (189)
+.++++|+||-+|-.+-+++++..-..++..+-..+...+ +-+..+-++-||-|.+++++. ..|...|..++..+.+
T Consensus 318 ~~~all~lDlD~FK~iND~~Gh~~GD~~L~~va~~L~~~~-r~~d~vaR~GGDEF~vll~~~~~~~a~~~a~ri~~~~~~ 396 (459)
T 1w25_A 318 DPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNV-RAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSG 396 (459)
T ss_dssp CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CTTSEEEECSSSEEEEEETTCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 8698702121477676435421567768999999888728-998589998065899997899999999999999999976
Q ss_pred HHHHCCC-C--CCCCEEEEEEE
Q ss_conf 9873036-6--74210237775
Q T0520 84 REEDTPR-K--ERIQYRIGINI 102 (189)
Q Consensus 84 ~~~~~~~-~--~~l~~riGih~ 102 (189)
.+-.... . ..+.+.|||..
T Consensus 397 ~~~~~~~~~~~~~vt~SiGia~ 418 (459)
T 1w25_A 397 SPFTVAHGREMLNVTISIGVSA 418 (459)
T ss_dssp SCEECGGGSCEECCCEEEEEEE
T ss_pred CCCEECCCCEEEEEEEEEEEEE
T ss_conf 8936658988999999999997
No 12
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=97.15 E-value=0.0014 Score=37.78 Aligned_cols=80 Identities=8% Similarity=0.037 Sum_probs=62.0
Q ss_pred EEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC--HHHHHHHHHHHHHHHHH
Q ss_conf 6899999623354768634999899999999999999999871978974104550245420--46889999999889999
Q T0520 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--AQAALRCALEIQQAMQQ 83 (189)
Q Consensus 6 r~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~--~~~Av~~a~~~~~~l~~ 83 (189)
+..+++++||-+|..+.++.+.+....++..+...+.+.+.+.+..+.++-||.+++++.. ...+...+-.+++.+..
T Consensus 201 ~~~al~~ldID~Fk~ind~~G~~~gD~vL~~va~~l~~~~~r~~divaR~ggdeF~ill~~~~~~~a~~~ae~l~~~i~~ 280 (358)
T 3bre_A 201 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVES 280 (358)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98899999896364776514817789999999999875158877589994695578861787768999999999999996
Q ss_pred HH
Q ss_conf 98
Q T0520 84 RE 85 (189)
Q Consensus 84 ~~ 85 (189)
+.
T Consensus 281 ~~ 282 (358)
T 3bre_A 281 LQ 282 (358)
T ss_dssp TC
T ss_pred HC
T ss_conf 03
No 13
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with ggdef-domain, structural genomics; 1.95A {Geobacter sulfurreducens}
Probab=96.86 E-value=0.0032 Score=35.86 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=68.9
Q ss_pred EEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC--HHHHHHHHHHHHHHHHH
Q ss_conf 6899999623354768634999899999999999999999871978974104550245420--46889999999889999
Q T0520 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--AQAALRCALEIQQAMQQ 83 (189)
Q Consensus 6 r~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~--~~~Av~~a~~~~~~l~~ 83 (189)
+..+++++||-+|-.+-++.+.+.-..++..+...+...+ ..+..+-.+-||.+.+++++ +..+...+-.+++.+.+
T Consensus 212 ~~~all~idid~fk~iNd~~Gh~~GD~lL~~va~~L~~~~-~~~d~~aR~ggdeF~ill~~~~~~~~~~~ae~l~~~l~~ 290 (342)
T 3ezu_A 212 SNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHL-RRSDVVGRYDGDEFVVYLSPVEPASLRTVAENLRRSIEE 290 (342)
T ss_dssp CEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTC-CTTCEEEECSSSEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 9589999989986076771281879999999999854036-777545535898899970899999999999999999861
Q ss_pred HHHHCCCCCCCCEEEEEEEEEEE
Q ss_conf 98730366742102377753278
Q T0520 84 REEDTPRKERIQYRIGINIGDIV 106 (189)
Q Consensus 84 ~~~~~~~~~~l~~riGih~G~v~ 106 (189)
.+ ....++.+.||+..|...
T Consensus 291 ~~---~~~~~~t~siGva~~~~~ 310 (342)
T 3ezu_A 291 ES---ARMVPVTASIGVAQGILG 310 (342)
T ss_dssp HT---TTTCCEEEEEEEEEEECC
T ss_pred CC---CCEEEEEEEEEEEEECCC
T ss_conf 05---863137999999961047
No 14
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=96.18 E-value=0.016 Score=31.90 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=71.2
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC--HHHHHHHHHHHHHHHH
Q ss_conf 16899999623354768634999899999999999999999871978974104550245420--4688999999988999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--AQAALRCALEIQQAMQ 82 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~--~~~Av~~a~~~~~~l~ 82 (189)
.+..+++++||.+|..+.+..+.+....++..+...+...+ .....+-.+-+|-+.++++. ...+...+-.+.+.+.
T Consensus 37 ~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~-~~~~~~~r~~~~~f~il~~~~~~~~~~~~~~~i~~~i~ 115 (177)
T 3ign_A 37 GQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNI-RQSDSAGRYGGEEFGIILPETDAESARVICERIREAIE 115 (177)
T ss_dssp CCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTS-CTTSEEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 99679999844332002466780789898888777765304-56665202258879999789898999999999999998
Q ss_pred HHHHHCC-CCCCCCEEEEEEEEEEEEE-CCCCCCCCCHHH---HHHHHCCCCCEEEECHHH
Q ss_conf 9987303-6674210237775327874-130145310179---999841899879986689
Q T0520 83 QREEDTP-RKERIQYRIGINIGDIVLE-DGDIFGDAVNVA---ARLEAISEPGAICVSDIV 138 (189)
Q Consensus 83 ~~~~~~~-~~~~l~~riGih~G~v~~~-~~~~~G~~Vn~A---aRl~~~a~~~~Ilvs~~~ 138 (189)
+...... ....+.+.+|+ +..- +..=+-.-++.| -+.......++|.++.+-
T Consensus 116 ~~~~~~~~~~~~~~~siGi----~~~~~~~~~~~~ll~~A~~AL~~AK~~G~n~v~~~~~~ 172 (177)
T 3ign_A 116 KSTVSTSAGDIQYTVSMGI----AQLTETPENYMQWMQKADEALYKAKESGRNKVVVSLEH 172 (177)
T ss_dssp TCCEECSSCEECCCEEEEE----EECCSCCSSHHHHHHHHHHHHHHHHHTTSSSEEECC--
T ss_pred HCCCCCCCCCCEEEEEEEE----EECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 2765457887316788999----96479988899999999999999998499969998842
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR response regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=96.16 E-value=0.026 Score=30.77 Aligned_cols=82 Identities=7% Similarity=0.041 Sum_probs=59.1
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC--CHHHHHHHHHHHHHHHH
Q ss_conf 1689999962335476863499989999999999999999987197897410455024542--04688999999988999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD--TAQAALRCALEIQQAMQ 82 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~--~~~~Av~~a~~~~~~l~ 82 (189)
.+..+++++||.+|..+.+..+.+....++..+...+.....+.+..+-++-||.+.+++. +...+...+-.+.+.+.
T Consensus 59 ~~~~~l~~i~i~~~~~i~~~~G~~~~d~ll~~~a~~l~~~~~~~~diiaR~~~d~Favll~~~~~~~~~~~~~~i~~~i~ 138 (206)
T 3i5c_A 59 QSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVE 138 (206)
T ss_dssp TCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 98489999836716778750597336699998888877623555655674179869999689998999999999999999
Q ss_pred HHHH
Q ss_conf 9987
Q T0520 83 QREE 86 (189)
Q Consensus 83 ~~~~ 86 (189)
..+.
T Consensus 139 ~~~~ 142 (206)
T 3i5c_A 139 SLQI 142 (206)
T ss_dssp HTCC
T ss_pred HHCC
T ss_conf 7345
No 16
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=95.10 E-value=0.032 Score=30.27 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCH---HHHHHHHHHHHH
Q ss_conf 168999996233547686349998999999999999999998719789741045502454204---688999999988
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTA---QAALRCALEIQQ 79 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~---~~Av~~a~~~~~ 79 (189)
.+..+++.+||.+|..+.+..+.+....++..+...+.+.+ +.+..+.++.+|.+.++.+.. ..+...+..++.
T Consensus 28 ~~~~~l~~i~Id~~~~i~~~~G~~~~d~~l~~va~~l~~~~-~~~d~i~r~~~~~F~ill~~~~~~~~~~~~~~~~~~ 104 (171)
T 3icl_A 28 GNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAV-RDGDTVARIGGDKFTILLNGAKDTLNGALVAQKILD 104 (171)
T ss_dssp TSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHS-CTTCEEEEETTTEEEEEESSCTTSTTTHHHHHHHHH
T ss_pred CCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99289999805178999871199753047887656532035-898889982598899996899868999999999999
No 17
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=94.85 E-value=0.15 Score=26.52 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=64.7
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC--HHHHHHHHHHHHHHHH
Q ss_conf 16899999623354768634999899999999999999999871978974104550245420--4688999999988999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--AQAALRCALEIQQAMQ 82 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~--~~~Av~~a~~~~~~l~ 82 (189)
.+..++++++|.+|..+.+..+......++..+...+...+... ..+-++-+|.+.++++. ...+...+-.+.+.+.
T Consensus 42 ~~~~~l~~i~id~~~~i~~~~G~~~~d~ll~~~a~~l~~~~~~~-~~v~r~~~~~F~ill~~~~~~~~~~~~~~l~~~i~ 120 (177)
T 3hva_A 42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGEE-ADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVE 120 (177)
T ss_dssp CCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-CEEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 99758986523158999987094467899999987520146641-37897069989998489999999999999999997
Q ss_pred HHHHHCCCCCCCCEEEEEEEEEEEE
Q ss_conf 9987303667421023777532787
Q T0520 83 QREEDTPRKERIQYRIGINIGDIVL 107 (189)
Q Consensus 83 ~~~~~~~~~~~l~~riGih~G~v~~ 107 (189)
.... ......+.+.++.|-+..
T Consensus 121 ~~~~---~~~~~~~~it~siGia~~ 142 (177)
T 3hva_A 121 NHLF---ELNGRSAQATLSIGVAGL 142 (177)
T ss_dssp TCCE---EETTEEECCCEEEEEEEE
T ss_pred CCCC---CCCCCCEEEEEEEEEEEC
T ss_conf 1554---457972212578999971
No 18
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=93.75 E-value=0.26 Score=25.15 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=30.3
Q ss_pred EEEEEEEECCCHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC
Q ss_conf 89999962335476-8634999899999999999999999871978974104550245420
Q T0520 7 LCAILAADMAGYSR-LMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT 66 (189)
Q Consensus 7 ~~tvlf~Di~~~t~-l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~ 66 (189)
.++|+=.||.++|. ++...++-.....+......+.+...++|+...=.-||-+|++.+.
T Consensus 131 ~V~IaH~DVnd~T~~~T~~~s~ydt~~~I~~ly~~l~~~~~~~gsL~ff~GGDN~m~v~~~ 191 (268)
T 2qv6_A 131 YVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSNG 191 (268)
T ss_dssp CEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEECTT
T ss_pred CEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCC
T ss_conf 4699998421641221047883489999999999999999874988997358569998898
No 19
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=88.32 E-value=0.57 Score=23.29 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=44.8
Q ss_pred EEEEEEEECCC---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC--HHHHHHHHHHHHHHH
Q ss_conf 89999962335---4768634999899999999999999999871978974104550245420--468899999998899
Q T0520 7 LCAILAADMAG---YSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--AQAALRCALEIQQAM 81 (189)
Q Consensus 7 ~~tvlf~Di~~---~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~--~~~Av~~a~~~~~~l 81 (189)
..+++..++.+ +..+.++.+.+....++..+...+.... .++.+.+..+|.+.+++.. .+.+...+..++..+
T Consensus 27 ~~~~~~~~i~~~~~~~~in~~~G~~~~d~ll~~~a~~l~~~~--~~~~~~r~~~d~Fail~~~~~~~~~~~~~~~i~~~~ 104 (176)
T 3hvw_A 27 ALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAEL--PDFTLYKISPTRFGLLLPRQQQEETESVCLRLLRAF 104 (176)
T ss_dssp EEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC--TTSCEEEEETTEEEEEEEGGGGGGHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 997799999888658899885197430258999999998603--576589972888999849999999999999999997
No 20
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=58.29 E-value=1.6 Score=20.81 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=51.4
Q ss_pred CEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCH--HHHHHHHHHHHHHH
Q ss_conf 5168999996233547686349998999999999999999998719789741045502454204--68899999998899
Q T0520 4 ERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTA--QAALRCALEIQQAM 81 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~--~~Av~~a~~~~~~l 81 (189)
..+..+++++||.+|..+-+..+.+....++..+...+.+.+.. +..+.++-||-+.+++... ..+...+.++.+.+
T Consensus 41 ~~~~~~li~i~i~~~~~in~~~G~~~~d~lL~~la~~L~~~~~~-~~~laR~~~~~F~vll~~~~~~~~~~~~~~l~~~l 119 (437)
T 3hvb_A 41 ARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFKGKTPEQAQAALQRLLKKV 119 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 49978999997987779998729199999999999999986699-87899986723121156776788888777899999
Q ss_pred H
Q ss_conf 9
Q T0520 82 Q 82 (189)
Q Consensus 82 ~ 82 (189)
.
T Consensus 120 ~ 120 (437)
T 3hvb_A 120 E 120 (437)
T ss_dssp -
T ss_pred H
T ss_conf 7
No 21
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.36 E-value=19 Score=14.80 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=32.2
Q ss_pred EEEEEECCCHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCEEEEECCHHHHHHHH
Q ss_conf 999962335476-86349998999999999999999998719-7897410455024542046889999
Q T0520 9 AILAADMAGYSR-LMERNETDVLNRQKLYRRELIDPAIAQAG-GQIVKTTGDGMLARFDTAQAALRCA 74 (189)
Q Consensus 9 tvlf~Di~~~t~-l~~~~~~~~~~~~~~~~~~~~~~~i~~~g-G~i~k~~GDg~la~F~~~~~Av~~a 74 (189)
||+. -|.+.+. .-+-.++..+..+++.| ..|| ..+++|.+|-+.+.|.+-+.|+++.
T Consensus 17 TIvV-~i~~~s~~~~~~FDe~li~eLLq~l--------~~~GeViLvRfv~d~mwVTF~dG~SAL~al 75 (95)
T 1ufw_A 17 TVVV-NLQSPTLEEKNEFPEDLRTELMQTL--------GSYGTIVLVRINQGQMLVTFADSHSALSVL 75 (95)
T ss_dssp EEEE-EESSCCHHHHHSCCHHHHHHHHHHH--------HHHSCCSEEEEETTEEEEECSCSHHHHHHH
T ss_pred EEEE-EECCCCCCCCCCCCHHHHHHHHHHH--------HHCCEEEEEEEECCEEEEEECCCHHHHHHH
T ss_conf 7999-9626885434558879999999986--------417659999994881899986878799875
No 22
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} SCOP: c.6.2.5
Probab=24.04 E-value=29 Score=13.76 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=48.5
Q ss_pred EEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96233547686349998999999999999999998719789--74104550245420468899999998899999873
Q T0520 12 AADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQI--VKTTGDGMLARFDTAQAALRCALEIQQAMQQREED 87 (189)
Q Consensus 12 f~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i--~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~~~~~ 87 (189)
|-|..||-+-.-.++++++...+.+-...+..+...+|..+ +|--|- +++.+..--..|..+.+.+..++..
T Consensus 65 ypD~~gFGRr~~~~~~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGA----LYN~a~~d~~lA~~i~~ai~~~~~~ 138 (250)
T 2dfa_A 65 FPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGA----LYLKACRDRETARAIALAVKAFDPG 138 (250)
T ss_dssp CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHH----HHHHHHHCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH----HHHHHHHCHHHHHHHHHHHHHCCCC
T ss_conf 8735444887778998999999999999999999983994032024378----7756753789999999999842887
No 23
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.70 E-value=33 Score=13.49 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHHHCCCE-EEEEECCCEEEEECCHHHHHHH
Q ss_conf 99871978-9741045502454204688999
Q T0520 44 AIAQAGGQ-IVKTTGDGMLARFDTAQAALRC 73 (189)
Q Consensus 44 ~i~~~gG~-i~k~~GDg~la~F~~~~~Av~~ 73 (189)
....+|-. +++|.+|-+.+.|.+-+.|+++
T Consensus 35 ~l~~~GeviLvRfv~d~mwVTF~dG~SAL~a 65 (91)
T 2dnr_A 35 QFASFGEVILIRFVEDKMWVTFLEGSSALNV 65 (91)
T ss_dssp HHHTTCCEEEEEECSSSEEEEESSHHHHHHG
T ss_pred HHHHCCCEEEEEEECCEEEEEECCCHHHHHH
T ss_conf 9863482899999488399998677879997
No 24
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, PSI, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=20.45 E-value=35 Score=13.34 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEE-------EC----CCEEEEECCHHHHHHHH--HHHHHHHH
Q ss_conf 999999999998719789741-------04----55024542046889999--99988999
Q T0520 35 LYRRELIDPAIAQAGGQIVKT-------TG----DGMLARFDTAQAALRCA--LEIQQAMQ 82 (189)
Q Consensus 35 ~~~~~~~~~~i~~~gG~i~k~-------~G----Dg~la~F~~~~~Av~~a--~~~~~~l~ 82 (189)
+.|...+.+++.+|||+++-. -| ..+++-|++-+.|..+- -+.|+...
T Consensus 21 ~~Y~~~~~~~i~~~gG~~l~~g~~~~~~eg~~~~~~viieFPs~e~A~~~y~SpeYq~~~~ 81 (99)
T 2fiu_A 21 KDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAK 81 (99)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCEEECCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999998399999999972685389875179998499999998878998999999
Done!