Query T0520 3MR7, Silicibacter pomeroyi, 189 residues
Match_columns 189
No_of_seqs 121 out of 2984
Neff 8.0
Searched_HMMs 11830
Date Fri May 21 18:07:11 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0520.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0520.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00211 Guanylate_cyc: Adenyl 100.0 5.2E-39 4.4E-43 233.9 14.5 166 4-171 5-186 (187)
2 PF00990 GGDEF: GGDEF domain; 95.6 0.044 3.7E-06 28.0 11.2 101 5-107 30-132 (161)
3 PF11294 DUF3095: Protein of u 94.1 0.11 9.3E-06 25.7 7.5 108 9-125 28-155 (373)
4 PF05165 GGDN: GGDN family; I 93.1 0.14 1.1E-05 25.2 6.7 54 12-65 3-59 (246)
5 PF10851 DUF2652: Protein of u 42.3 7.4 0.00063 15.5 8.1 88 40-127 4-110 (116)
6 PF03746 LamB_YcsF: LamB/YcsF 40.2 8 0.00068 15.3 4.8 73 11-87 63-137 (242)
7 PF01255 Prenyltransf: Putativ 37.9 8.8 0.00074 15.1 9.4 132 6-161 40-182 (223)
8 PF10655 DUF2482: Hypothetical 30.2 8.4 0.00071 15.2 1.5 33 95-127 42-74 (100)
9 PF08952 DUF1866: Domain of un 24.7 15 0.0013 13.8 4.4 32 42-73 53-85 (145)
10 PF03220 Tombus_P19: Tombusvir 15.8 24 0.002 12.7 1.6 38 90-127 53-106 (170)
No 1
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases () catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties , , , . Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0007242 intracellular signaling cascade, 0009190 cyclic nucleotide biosynthetic process; PDB: 1ybt_A 1ybu_A 1fx2_A 1fx4_A 1y10_B 1y11_A 1u0h_A 3e8a_A 1cju_A 2gvz_A ....
Probab=100.00 E-value=5.2e-39 Score=233.92 Aligned_cols=166 Identities=35% Similarity=0.543 Sum_probs=152.5
Q ss_pred CEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHH--------HHHHHH
Q ss_conf 516899999623354768634999899999999999999999871978974104550245420468--------899999
Q T0520 4 ERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQA--------ALRCAL 75 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~~~--------Av~~a~ 75 (189)
|.+++||||+||+|||.+++.++++.+..+++.++..+.+++.+|||+++|++||++|++|+.+.. ++++|+
T Consensus 5 ~~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~k~~GD~~~~~f~~~~~~~~~~~~~~~~~a~ 84 (187)
T PF00211_consen 5 EYRSVTVLFADIVGFTDLSERLSPEEVMKLLNDFFSRFDEIVRRYGGYVVKTIGDAVMAVFGLPEDSDADHALRAVQAAL 84 (187)
T ss_dssp EESS-EEEEEEETTHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHTTCEEEEE---EEEEEESSHSHHHTTHHHHHHHHHH
T ss_pred CCCCEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEECCCCCCCCEECCCCCCHHH
T ss_conf 22869999999238599986699999999999999999765542547986453868999966875333000023220158
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC
Q ss_conf 998899999873036674210237775327874-------1301453101799998418998799866899987432171
Q T0520 76 EIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSE 148 (189)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~~ 148 (189)
++++.+.+++..... ++++|||||+|+++.+ .|+++|++||.|+||++.|.+++|+||+++|+.+....++
T Consensus 85 ~~~~~~~~~~~~~~~--~l~~riGi~~G~v~~g~~G~~~~~~~~~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~~~~~ 162 (187)
T PF00211_consen 85 EIQELIQELNEESGV--DLRVRIGIHTGPVICGVIGSSRPDYDVFGDAVNIAARLESLAKPGQILVSEEVYELLRSSFSF 162 (187)
T ss_dssp HHHHHHHHHHHHHTS----EEEB--B---EEEEEBTTTS-B-EEESEHHHHHHHHHHHS-TTEBEEEHHHHHHTCHGGCE
T ss_pred HHHHHHHHHHCCCCC--CEEEEEEEEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCCE
T ss_conf 999998752103466--357899984253222012234543109855899889998505899389758999975054764
Q ss_pred CEE-ECCCEEECCCCCCEEEEEEE
Q ss_conf 426-64848744678845899950
Q T0520 149 PFT-DLGLQKVKNITRPIRVWQWV 171 (189)
Q Consensus 149 ~~~-~~g~~~lkG~~~p~~vy~v~ 171 (189)
.++ ++|.++|||+.+|+++|++.
T Consensus 163 ~~~~~~g~~~lkg~~~~v~~y~l~ 186 (187)
T PF00211_consen 163 QFRFELGEVELKGKGQPVETYQLE 186 (187)
T ss_dssp EEEEEEEEB-HHHHHSTBEEEEEE
T ss_pred EEEEECCEEEECCCCCCEEEEEEE
T ss_conf 589830429967999837999996
No 2
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria ,. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase .; PDB: 3hvw_A 3bre_B 1w25_A 2v0n_B 3ezu_A.
Probab=95.65 E-value=0.044 Score=27.95 Aligned_cols=101 Identities=10% Similarity=0.195 Sum_probs=68.4
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHH--HHHHHHHHHHHHH
Q ss_conf 16899999623354768634999899999999999999999871978974104550245420468--8999999988999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQA--ALRCALEIQQAMQ 82 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~~~--Av~~a~~~~~~l~ 82 (189)
....+++.+||.++..+....+.+....++..+...+...+.. +..+.++-+|-+++++..... +..++..+.+.+.
T Consensus 30 ~~~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~i~~~l~~~~~~-~d~~~r~~~~~f~il~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF00990_consen 30 QQPFALILIDIDNLDEINQKYGHEAGDSLLKQIADRLRSQLRE-NDLVARLDDDEFAILLPNTDDEEADQIAQRIRKLIE 108 (161)
T ss_dssp CEEEEEEEEEETTHHHHHHH---HHHHHHHHHHHHHHHHTSTT-TSEEEE-BTTEEEEEECCGGHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 8863799998984476654302212440334431233201345-764334678885341122333220035677888988
Q ss_pred HHHHHCCCCCCCCEEEEEEEEEEEE
Q ss_conf 9987303667421023777532787
Q T0520 83 QREEDTPRKERIQYRIGINIGDIVL 107 (189)
Q Consensus 83 ~~~~~~~~~~~l~~riGih~G~v~~ 107 (189)
.++.... .....+++.+..|-+..
T Consensus 109 ~~~~~~~-~~~~~~~~~~~~G~~~~ 132 (161)
T PF00990_consen 109 KLNQPIQ-IKGIEFRLSLSIGIATY 132 (161)
T ss_dssp HTTCEEC-SS-CEEBEEEEB--EEE
T ss_pred HHHCCCC-CCCCCCCCCCCCEEEEE
T ss_conf 6421001-11222235556317974
No 3
>PF11294 DUF3095: Protein of unknown function (DUF3095)
Probab=94.06 E-value=0.11 Score=25.72 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=59.8
Q ss_pred EEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE--EEECCCEEEEEC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 999962335476863499989999999999999999987197897--410455024542-04688999999988999998
Q T0520 9 AILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIV--KTTGDGMLARFD-TAQAALRCALEIQQAMQQRE 85 (189)
Q Consensus 9 tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~--k~~GDg~la~F~-~~~~Av~~a~~~~~~l~~~~ 85 (189)
.|+.+||++||.....=-...++..-. ..+..+....+|.-+ -|-|||..+..+ +-..+++-||.....+.
T Consensus 28 ~i~vaDIv~ST~AIa~GryK~VNm~Ga---~~IaAvlN~~~~~~~PFvFGGDGA~f~vPp~~~~~ar~ALa~~~~~~--- 101 (373)
T PF11294_consen 28 VIGVADIVNSTKAIAAGRYKDVNMAGA---SVIAAVLNALGGRDFPFVFGGDGATFAVPPEDAEAARDALAAVRAWV--- 101 (373)
T ss_pred EEEEEEECCCHHHHHCCCCCCCHHHHH---HHHHHHHHCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHH---
T ss_conf 899855016689997388431408889---99999985236898775846898478649888999999999999999---
Q ss_pred HHCCCCCCCCEEEEEEE-E-------EEEEECC--------C-CCCCCCHHHHHHHH
Q ss_conf 73036674210237775-3-------2787413--------0-14531017999984
Q T0520 86 EDTPRKERIQYRIGINI-G-------DIVLEDG--------D-IFGDAVNVAARLEA 125 (189)
Q Consensus 86 ~~~~~~~~l~~riGih~-G-------~v~~~~~--------~-~~G~~Vn~AaRl~~ 125 (189)
.....|.+|+|+.- . ++.+..| . ..|...+.|-+...
T Consensus 102 ---~~~f~L~LRvg~VpV~~ira~G~dv~var~~~S~~~~~amf~GgGL~~AE~~mK 155 (373)
T PF11294_consen 102 ---KEEFDLELRVGLVPVADIRAAGHDVRVARFAASPNVTYAMFSGGGLAWAERQMK 155 (373)
T ss_pred ---HHHCCCEEEEEEEEHHHHHHCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHH
T ss_conf ---974397136655689999857974899985278871578896586899999971
No 4
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2qv6_C.
Probab=93.12 E-value=0.14 Score=25.22 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=33.4
Q ss_pred EEECCCHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC
Q ss_conf 96233547686349998---9999999999999999987197897410455024542
Q T0520 12 AADMAGYSRLMERNETD---VLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD 65 (189)
Q Consensus 12 f~Di~~~t~l~~~~~~~---~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~ 65 (189)
.+.|.||-.|+++++|. .+..+...++..+.+....++|.+.-+.=|-++++-+
T Consensus 3 ~iql~~Y~~WT~tlgprRE~~iQ~lQa~l~~~l~~~~~~~~g~~f~~R~D~~iav~n 59 (246)
T PF05165_consen 3 VIQLDGYGPWTETLGPRREWDIQTLQARLYADLQKFFGQRGGFVFPTRFDNMIAVTN 59 (246)
T ss_dssp EEEETT---TTTSSS---HHHHHHHHHHHHHHHHHH-------EE-TTSSEEEEE--
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEC
T ss_conf 689348766657789861889999999999999999751797862211013677525
No 5
>PF10851 DUF2652: Protein of unknown function (DUF2652)
Probab=42.32 E-value=7.4 Score=15.53 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCE-EEEEECCCEEEE-ECCHHHH--HHHHHHHHHHHHHHHHHCCC-----------CCCCCEEEEEEEEE
Q ss_conf 999999871978-974104550245-4204688--99999998899999873036-----------67421023777532
Q T0520 40 LIDPAIAQAGGQ-IVKTTGDGMLAR-FDTAQAA--LRCALEIQQAMQQREEDTPR-----------KERIQYRIGINIGD 104 (189)
Q Consensus 40 ~~~~~i~~~gG~-i~k~~GDg~la~-F~~~~~A--v~~a~~~~~~l~~~~~~~~~-----------~~~l~~riGih~G~ 104 (189)
++..+|....|. +-|.-||+++.+ ++.+..+ ++-.-.|..++.+......+ ...|.+++-.|+|+
T Consensus 4 LLE~lI~an~~lklaeiEGDA~fFy~~~~~~~~~~~~~~~~M~~~F~~r~e~~~k~~~C~C~sC~~~~~LsLKfVaH~Ge 83 (116)
T PF10851_consen 4 LLESLIDANQGLKLAEIEGDAIFFYAPGGPPSVELCRQVEKMRCAFHQRREEFKKDRICQCKSCAQAVNLSLKFVAHYGE 83 (116)
T ss_pred HHHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEEECE
T ss_conf 99999844788367763263899987899943289998999999999999998437777847777664355899997230
Q ss_pred EEE---EC-CCCCCCCCHHHHHHHHCC
Q ss_conf 787---41-301453101799998418
Q T0520 105 IVL---ED-GDIFGDAVNVAARLEAIS 127 (189)
Q Consensus 105 v~~---~~-~~~~G~~Vn~AaRl~~~a 127 (189)
+.. .+ -..+|-.|-+|-||-.-.
T Consensus 84 ~~~~~Vk~~~kL~G~dvI~aHrlLKN~ 110 (116)
T PF10851_consen 84 VAFQQVKRFRKLAGKDVILAHRLLKND 110 (116)
T ss_pred EEHHHHHCCCHHCCCCHHHHHHHHHCC
T ss_conf 002224011111474024748987267
No 6
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression . The exact molecular function of the proteins in this family is unknown.; PDB: 1xw8_A 1v6t_A 2dfa_A.
Probab=40.21 E-value=8 Score=15.34 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=49.4
Q ss_pred EEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996233547686349998999999999999999998719789--74104550245420468899999998899999873
Q T0520 11 LAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQI--VKTTGDGMLARFDTAQAALRCALEIQQAMQQREED 87 (189)
Q Consensus 11 lf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i--~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~~~~~ 87 (189)
=|-|+.||-+-.-.++++++...+.+-...+..+...+|+.+ +|--|- +++.+..--..|..+.+.+..++..
T Consensus 63 sypD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hVKPHGA----LYN~aa~d~~lA~av~~av~~~~~~ 137 (242)
T PF03746_consen 63 SYPDLEGFGRRSMDLSPDELRDSVLYQIGALQAIARAEGTRLHHVKPHGA----LYNDAARDEELARAVARAVKAFDPS 137 (242)
T ss_dssp ----------------HHHHHHHHHHH---HHHHHHH----B-EE---------HHHHHHH-HHHHHHHHHHHHHH-TT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH----HHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 99976799988899999999999999999999999984996568577788----8888846999999999999987999
No 7
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) . This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts.; GO: 0016740 transferase activity, 0008152 metabolic process; PDB: 1f75_B 2e9c_A 1ueh_B 2e9a_B 2e9d_B 1x07_A 1v7u_A 1x08_A 1jp3_A 2e98_B ....
Probab=37.85 E-value=8.8 Score=15.13 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=70.5
Q ss_pred EEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----CCEEEEEECCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 6899999623354768634999899999999999999999871----978974104550245420468899999998899
Q T0520 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQA----GGQIVKTTGDGMLARFDTAQAALRCALEIQQAM 81 (189)
Q Consensus 6 r~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~----gG~i~k~~GDg~la~F~~~~~Av~~a~~~~~~l 81 (189)
+.+|+....+.++ +.+++++..+++.+...+.+.+... .|.-++++||--+. |. ++++.+
T Consensus 40 ~~lTvYaFS~eN~-----~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~irvr~iGd~~~L----p~-------~l~~~i 103 (223)
T PF01255_consen 40 KYLTVYAFSTENW-----KRPKEEVDALMNLFEEKLRELIDDLHFCKNGIRVRVIGDLSLL----PD-------ELRKAI 103 (223)
T ss_dssp SEEEEEEEETTGG-----GS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEE--GTTS-----H-------HHHHHH
T ss_pred CEEEEEEECCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC----CH-------HHHHHH
T ss_conf 8899998604011-----8799999999999999999998874123349589997573008----99-------999999
Q ss_pred HHHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEE---EECHHHHHH-HH-H--HCCCCEEECC
Q ss_conf 999873036674210237775327874130145310179999841899879---986689998-74-3--2171426648
Q T0520 82 QQREEDTPRKERIQYRIGINIGDIVLEDGDIFGDAVNVAARLEAISEPGAI---CVSDIVHQI-TQ-D--RVSEPFTDLG 154 (189)
Q Consensus 82 ~~~~~~~~~~~~l~~riGih~G~v~~~~~~~~G~~Vn~AaRl~~~a~~~~I---lvs~~~~~~-i~-~--~~~~~~~~~g 154 (189)
.+..........+.+.|.+.||. ..++. +.+.++...+..+.+ -|+++..+. +. . ..+...+.=|
T Consensus 104 ~~~e~~T~~n~~~~lni~~~Y~g----r~eI~----~A~~~~~~~~~~~~~~~~~i~~~~i~~~L~~~~~PpDLlIRTsG 175 (223)
T PF01255_consen 104 EEAEEKTKNNTGLTLNIAFNYGG----RDEIV----DAVKKLAEDVKQGELSPEDIDEELIESHLYTPDLPPDLLIRTSG 175 (223)
T ss_dssp HHHHHCCTTS-SEEEEEEEEE------HHHHH----HHHHHHHHHHHHCCGGGGG-SHHHHHCCSTTTTS--SEEEEE--
T ss_pred HHHHHHCCCCCCEEEEEEECCCC----HHHHH----HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 99998543666559999956796----99999----99999999997289774667999999736899979968997489
Q ss_pred CEEECCC
Q ss_conf 4874467
Q T0520 155 LQKVKNI 161 (189)
Q Consensus 155 ~~~lkG~ 161 (189)
+.+|-++
T Consensus 176 e~RLSnF 182 (223)
T PF01255_consen 176 EQRLSNF 182 (223)
T ss_dssp --B-TTS
T ss_pred CCCCCCC
T ss_conf 4120266
No 8
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482)
Probab=30.24 E-value=8.4 Score=15.22 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.5
Q ss_pred CEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf 102377753278741301453101799998418
Q T0520 95 QYRIGINIGDIVLEDGDIFGDAVNVAARLEAIS 127 (189)
Q Consensus 95 ~~riGih~G~v~~~~~~~~G~~Vn~AaRl~~~a 127 (189)
--.||+.-|+.+.++.+++|..|++|.-|....
T Consensus 42 FS~vGv~~GD~~~sS~~~lG~~~~lA~LL~~~~ 74 (100)
T PF10655_consen 42 FSTVGVSNGDFISSSHCALGNVVDLANLLDNRK 74 (100)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 641045578705652177763874999982410
No 9
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This protein, found in Synaptojanin, has no known function. ; PDB: 1ufw_A 2dnr_A.
Probab=24.72 E-value=15 Score=13.84 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHCC-CEEEEEECCCEEEEECCHHHHHHH
Q ss_conf 99998719-789741045502454204688999
Q T0520 42 DPAIAQAG-GQIVKTTGDGMLARFDTAQAALRC 73 (189)
Q Consensus 42 ~~~i~~~g-G~i~k~~GDg~la~F~~~~~Av~~ 73 (189)
-+....+| ..++|+.++.+.+.|.+...|+.+
T Consensus 53 ~~~l~~~GeV~LvRfv~~~mwVtF~dG~sAL~a 85 (145)
T PF08952_consen 53 LQELAEYGEVTLVRFVEGDMWVTFRDGRSALAA 85 (145)
T ss_dssp HHHHHT---ECEEEE-SSSEEEEES-SHHHHHH
T ss_pred HHHHHHCCCEEEEEEECCCEEEEECCCHHHHHH
T ss_conf 999985684899998478289998685889998
No 10
>PF03220 Tombus_P19: Tombusvirus P19 core protein; InterPro: IPR004905 This family represents the Tombusvirus P19 core protein.; GO: 0019012 virion; PDB: 1r9f_A 1rpu_B.
Probab=15.75 E-value=24 Score=12.71 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=27.2
Q ss_pred CCCCCCEEEEEEEEEEEEEC---------------CCCCCCCCHHHH-HHHHCC
Q ss_conf 66742102377753278741---------------301453101799-998418
Q T0520 90 RKERIQYRIGINIGDIVLED---------------GDIFGDAVNVAA-RLEAIS 127 (189)
Q Consensus 90 ~~~~l~~riGih~G~v~~~~---------------~~~~G~~Vn~Aa-Rl~~~a 127 (189)
++.||+++-.--+|-|+... .+|-|+.||.|| |.-.+.
T Consensus 53 ~D~PLGFKEsW~fGKvvfKRYlRyd~tE~SLhR~lgSW~~dsVn~aASRFlG~~ 106 (170)
T PF03220_consen 53 KDNPLGFKESWGFGKVVFKRYLRYDGTETSLHRALGSWEGDSVNYAASRFLGVD 106 (170)
T ss_dssp -------EEEE------EEEE----SSHHHHHHH---B---HHHHHHHTT----
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 788766400123205444456423650557988752434661677888643665
Done!