Query T0520 3MR7, Silicibacter pomeroyi, 189 residues
Match_columns 189
No_of_seqs 121 out of 2984
Neff 8.0
Searched_HMMs 15564
Date Fri May 21 18:04:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0520.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0520.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wc1a_ d.58.29.1 (A:) Adenyla 100.0 8.2E-41 5.6E-45 244.6 18.8 168 3-173 3-195 (197)
2 d1azsa_ d.58.29.1 (A:) Adenyly 100.0 9.9E-42 0 249.8 12.8 165 5-171 12-190 (190)
3 d1fx2a_ d.58.29.1 (A:) Recepto 100.0 3.3E-40 2.1E-44 241.3 15.5 174 5-179 10-225 (235)
4 d1azsa_ d.58.29.1 (A:) Adenyly 100.0 2.9E-40 1.8E-44 241.6 12.8 166 4-171 11-190 (190)
5 d1azsb_ d.58.29.1 (B:) Adenyly 100.0 1.7E-37 1.1E-41 226.2 17.3 162 6-171 5-198 (199)
6 d1w25a3 d.58.29.2 (A:294-455) 96.1 0.014 8.8E-07 31.5 7.5 78 5-83 25-104 (162)
7 d1ufwa_ d.58.7.1 (A:) Synaptoj 52.1 6.8 0.00044 16.4 3.9 43 24-74 32-75 (95)
8 d1v6ta_ c.6.2.5 (A:) Hypotheti 29.5 16 0.001 14.3 3.8 72 12-87 65-138 (254)
9 d1xw8a_ c.6.2.5 (A:) Hypotheti 25.8 19 0.0012 13.9 3.2 71 12-86 60-132 (247)
10 d2dfaa1 c.6.2.5 (A:1-250) Hypo 21.3 23 0.0015 13.4 3.1 72 12-87 65-138 (250)
No 1
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}
Probab=100.00 E-value=8.2e-41 Score=244.65 Aligned_cols=168 Identities=25% Similarity=0.378 Sum_probs=145.8
Q ss_pred CCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC---------HHHHHHH
Q ss_conf 6516899999623354768634999899999999999999999871978974104550245420---------4688999
Q T0520 3 AERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT---------AQAALRC 73 (189)
Q Consensus 3 ~Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~---------~~~Av~~ 73 (189)
.|+|++||||+||+|||++++.++++.+..+++.|+..+.+++.+|||+++|++||++|++|+. +..|+.+
T Consensus 3 pe~r~vtvlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~~~f~~~~~~~~~~~~~~a~~~ 82 (197)
T d1wc1a_ 3 PEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAIAT 82 (197)
T ss_dssp CEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 73379999999917878998769999999999999999876676533322122111689983487422210456778999
Q ss_pred HHHHHHHHHHHHHHCC--------CCCCCCEEEEEEEEEEEEE--------CCCCCCCCCHHHHHHHHCCCCCEEEECHH
Q ss_conf 9999889999987303--------6674210237775327874--------13014531017999984189987998668
Q T0520 74 ALEIQQAMQQREEDTP--------RKERIQYRIGINIGDIVLE--------DGDIFGDAVNVAARLEAISEPGAICVSDI 137 (189)
Q Consensus 74 a~~~~~~l~~~~~~~~--------~~~~l~~riGih~G~v~~~--------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~ 137 (189)
+..++..+...+.... ..+++++|||||+|+++.+ +|+++|++||+|+||++.|++++|+||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGI~~G~v~~g~iG~~~r~~y~~~G~~Vn~AaRle~~a~~~~Ilise~ 162 (197)
T d1wc1a_ 83 ARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAM 162 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSTTCCCCCEEEEEEEEEEEEEEEECSSSEEEEEESHHHHHHHHHHHHSCTTCEEEEHH
T ss_pred HHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH
T ss_conf 99988876531200101355566788864899999777777315664554333224547789999984077998998389
Q ss_pred HHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEECC
Q ss_conf 999874321714266484874467884589995036
Q T0520 138 VHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPD 173 (189)
Q Consensus 138 ~~~~i~~~~~~~~~~~g~~~lkG~~~p~~vy~v~~~ 173 (189)
+++++.+ +.+.++|.+.|||+.+|+.+|++.|.
T Consensus 163 ~~~~l~~---~~~~~~~~~~lKG~~~pv~~y~i~P~ 195 (197)
T d1wc1a_ 163 VAQYVPD---EEIIKREFLELKGIDEPVMTCVINPN 195 (197)
T ss_dssp HHTTSCG---GGEEEEEEECCTTCSSCEEEEEECCC
T ss_pred HHHHCCC---CEEEEECCEEECCCCCEEEEEEECCC
T ss_conf 9975388---71689667993799867999998787
No 2
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} SCOP: d1cula_
Probab=100.00 E-value=9.9e-42 Score=249.78 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=151.5
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEE-------CCHHHHHHHHHHH
Q ss_conf 168999996233547686349998999999999999999998719789741045502454-------2046889999999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARF-------DTAQAALRCALEI 77 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F-------~~~~~Av~~a~~~ 77 (189)
++++||||+||+|||+++++++++.+..+++.++..+.+++.+|||+++|++||++|++| +++.+|++||++|
T Consensus 12 ~~~vtvlf~Di~gft~~~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~~~fg~p~~~~~~a~~av~~al~i 91 (190)
T d1azsa_ 12 HDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDM 91 (190)
T ss_dssp EEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 27688999743353778750898899999999999986203330100010121234554176444320268999999889
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCE
Q ss_conf 8899999873036674210237775327874-------130145310179999841899879986689998743217142
Q T0520 78 QQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPF 150 (189)
Q Consensus 78 ~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~~~~ 150 (189)
++.+.+++... +.++++|||||+|+++.| +|+++|++||+|+||++.++|++|++|+++|+++.+.+++.+
T Consensus 92 ~~~~~~~~~~~--~~~l~~rIGih~G~v~~G~iG~~~~~~~v~G~~Vn~Aarle~~a~~~~I~iS~~~~~~l~~~~~~~~ 169 (190)
T d1azsa_ 92 IEAISLVREMT--GVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEP 169 (190)
T ss_dssp HHHHHHHHHHH--CSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTTCSCEEE
T ss_pred HHHHHHHHHCC--CCEEEEEEEEEECCCEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCEEEE
T ss_conf 99999985204--8768899999631230121212344430006278899998742899858978699985058603765
Q ss_pred EECCCEEECCCCCCEEEEEEE
Q ss_conf 664848744678845899950
Q T0520 151 TDLGLQKVKNITRPIRVWQWV 171 (189)
Q Consensus 151 ~~~g~~~lkG~~~p~~vy~v~ 171 (189)
...|++.+||+.+|+++|+++
T Consensus 170 ~~~g~~~~kg~~~~v~~y~v~ 190 (190)
T d1azsa_ 170 GCGGERNAYLKEHSIETFLIL 190 (190)
T ss_dssp CCGGGTCHHHHHTTCCCEEEC
T ss_pred ECCCEEEEEECCCCEEEEEEC
T ss_conf 125527875216637898868
No 3
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]}
Probab=100.00 E-value=3.3e-40 Score=241.30 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=147.1
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 16899999623354768634999899999999999999999871978974104550245420468899999998899999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEIQQAMQQR 84 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~~ 84 (189)
++++||||+||+|||.|++.+++ .+..+++.|+..+.+++.+|+|+++|++||++|++|+.|.+++.+|+++|..+...
T Consensus 10 ~~~vtilF~DI~gfT~l~e~~p~-~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~l~~F~~p~~a~~~A~~~q~~~~~~ 88 (235)
T d1fx2a_ 10 TDPVTLIFTDIESSTALWAAHPD-LMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFAAVQLAQELQLCFLHH 88 (235)
T ss_dssp TSCEEEEEEEETTHHHHHHHCTT-THHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEECCCHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 78799999861385999985999-99999999999999999974988999658827885079734789999999997422
Q ss_pred HHHC----------------------------------CCCCCCCEEEEEEEEEEEEE------CCCCCCCCCHHHHHHH
Q ss_conf 8730----------------------------------36674210237775327874------1301453101799998
Q T0520 85 EEDT----------------------------------PRKERIQYRIGINIGDIVLE------DGDIFGDAVNVAARLE 124 (189)
Q Consensus 85 ~~~~----------------------------------~~~~~l~~riGih~G~v~~~------~~~~~G~~Vn~AaRl~ 124 (189)
++.. .....+++|||||+|++..+ .++++|++||+|+||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vriGi~~G~v~~g~~g~~~~~~~~G~~Vn~AaRle 168 (235)
T d1fx2a_ 89 DWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTKGYDYYGRTPNMAARTE 168 (235)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTTSSSEEEESHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEECCCCCEEEEEECHHHHHHHHHH
T ss_conf 31022212366789998887655434567777788753268884589999856617852665222244217788999998
Q ss_pred HCCCCCEEEECHHHHHHHHHH--CCCCEEECCCEEECCCCCCEEEEEEECCCCCCCC
Q ss_conf 418998799866899987432--1714266484874467884589995036665667
Q T0520 125 AISEPGAICVSDIVHQITQDR--VSEPFTDLGLQKVKNITRPIRVWQWVPDADRDQS 179 (189)
Q Consensus 125 ~~a~~~~Ilvs~~~~~~i~~~--~~~~~~~~g~~~lkG~~~p~~vy~v~~~~~~~~~ 179 (189)
+.|++|+|+||+++++.+..+ ..+.++++|.+.|||+.+|+++|++.....+..+
T Consensus 169 s~a~~g~IliS~~~~~~l~~~~~~~~~~~~lg~~~lKG~~~p~~vy~v~~~~~r~~~ 225 (235)
T d1fx2a_ 169 SVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNTVPSRNFA 225 (235)
T ss_dssp HTCCTTCEEEEHHHHHTSCHHHHHTCCEEEEEEECCTTCSSCEEEEEECCSTTCCCC
T ss_pred HCCCCCEEEECHHHHHHHHHHHCCCEEEEEECEEEECCCCCCEEEEEEECCCCCCCC
T ss_conf 426898699879999987664057258999032982377887799999116788765
No 4
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]}
Probab=100.00 E-value=2.9e-40 Score=241.62 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=150.7
Q ss_pred CEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC-------CHHHHHHHHHH
Q ss_conf 51689999962335476863499989999999999999999987197897410455024542-------04688999999
Q T0520 4 ERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD-------TAQAALRCALE 76 (189)
Q Consensus 4 Err~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~-------~~~~Av~~a~~ 76 (189)
+.+++||||+||+|||.++++++++.+..+++.|+..+.+++.+|||.++|++||++|++|+ ++.+|+.|+++
T Consensus 11 ~~~~Vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~a~f~~~~~~~d~~~~a~~~a~~ 90 (190)
T d1azsa_ 11 KHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMD 90 (190)
T ss_dssp EEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 17968999998487369887699999999999999997220003674111021257999964777643210577888888
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCC
Q ss_conf 98899999873036674210237775327874-------13014531017999984189987998668999874321714
Q T0520 77 IQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEP 149 (189)
Q Consensus 77 ~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Ilvs~~~~~~i~~~~~~~ 149 (189)
|++.+.+++.. .+.++++|||||+|+++.+ +||++|++||+|+||++.|+|++|++|+++|+++++++++.
T Consensus 91 ~~~~~~~~~~~--~~~~l~~riGih~G~v~~g~~G~~~~~~~~~G~~Vn~Aarl~~~a~~~~ilvS~~~~~~l~~~~~~~ 168 (190)
T d1azsa_ 91 MIEAISLVREM--TGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVE 168 (190)
T ss_dssp HHHHHHHHHHH--HCSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTTCSCEE
T ss_pred HHHHHHHHHCC--CCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCEEHHHHHHCCCCCCEEEECHHHHHHHCCCCEEE
T ss_conf 99998630112--4665325777743023455455423224452461016778762588997998899999746583699
Q ss_pred EEECCCEEECCCCCCEEEEEEE
Q ss_conf 2664848744678845899950
Q T0520 150 FTDLGLQKVKNITRPIRVWQWV 171 (189)
Q Consensus 150 ~~~~g~~~lkG~~~p~~vy~v~ 171 (189)
+...|+..+||+.+|+++|+++
T Consensus 169 ~~~~g~~~~~gk~~~i~~y~vl 190 (190)
T d1azsa_ 169 PGCGGERNAYLKEHSIETFLIL 190 (190)
T ss_dssp ECCGGGTCHHHHHTTCCCEEEC
T ss_pred ECCCCEEEEECCCCCEEEEEEC
T ss_conf 7547379986246835999989
No 5
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1.7e-37 Score=226.19 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=138.9
Q ss_pred EEEEEEEEECCCHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCEEEEEC-------------
Q ss_conf 689999962335476863499----989999999999999999987---197897410455024542-------------
Q T0520 6 RLCAILAADMAGYSRLMERNE----TDVLNRQKLYRRELIDPAIAQ---AGGQIVKTTGDGMLARFD------------- 65 (189)
Q Consensus 6 r~~tvlf~Di~~~t~l~~~~~----~~~~~~~~~~~~~~~~~~i~~---~gG~i~k~~GDg~la~F~------------- 65 (189)
-.+||||+||+|||.++++++ ++++..+++.++..++.++.+ |||+++|++||++|++|+
T Consensus 5 ~~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~a~~g~~~~~~~~~a~~~ 84 (199)
T d1azsb_ 5 DCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEP 84 (199)
T ss_dssp EEEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEESSSCC---------
T ss_pred CCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCH
T ss_conf 84899999747973889747754699999999999999999999998636847999835748999668887654442146
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE-------CCCCCCCCCHHHHHHHHCCCCCEEE
Q ss_conf -----0468899999998899999873036674210237775327874-------1301453101799998418998799
Q T0520 66 -----TAQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAIC 133 (189)
Q Consensus 66 -----~~~~Av~~a~~~~~~l~~~~~~~~~~~~l~~riGih~G~v~~~-------~~~~~G~~Vn~AaRl~~~a~~~~Il 133 (189)
++.++++++++|++.+.+++... ..++++|||||+|+|+.| +|+++|++||+|+|||+.|+|++|+
T Consensus 85 ~~~~~~~~~av~~a~~~~~~~~~~~~~~--~~~l~~rIGIh~G~v~~Gv~g~~~~~y~v~Gd~VN~AaRle~~a~~g~I~ 162 (199)
T d1azsb_ 85 ERQYMHIGTMVEFAYALVGKLDAINKHS--FNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQ 162 (199)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHH--TCCCCCEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCEEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 7789869999999999998765301368--99734886640127546122156643325065899999998358998699
Q ss_pred ECHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEE
Q ss_conf 86689998743217142664848744678845899950
Q T0520 134 VSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWV 171 (189)
Q Consensus 134 vs~~~~~~i~~~~~~~~~~~g~~~lkG~~~p~~vy~v~ 171 (189)
||+++|+++++. .|.++++|++.|||+++ +.+|.|.
T Consensus 163 vS~~t~~~l~~~-~~~~~~~g~i~vKGkg~-~~ty~l~ 198 (199)
T d1azsb_ 163 VTEETSLILQTL-GYTCTCRGIINVKGKGD-LKTYFVN 198 (199)
T ss_dssp EEHHHHHHHHHT-TCCEEEEEEEEETTTEE-EEEEEEC
T ss_pred ECHHHHHHHHCC-CEEEEEECCEEECCCCE-EEEEEEE
T ss_conf 889999987338-82899969799338874-8899970
No 6
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=96.13 E-value=0.014 Score=31.45 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=58.4
Q ss_pred EEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECC--HHHHHHHHHHHHHHHH
Q ss_conf 16899999623354768634999899999999999999999871978974104550245420--4688999999988999
Q T0520 5 RRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--AQAALRCALEIQQAMQ 82 (189)
Q Consensus 5 rr~~tvlf~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i~k~~GDg~la~F~~--~~~Av~~a~~~~~~l~ 82 (189)
.+..+++.+||.+|..+.+..+.+....++..+.+.+...+.. ...+-++-||.+.+++.. ...+...+..+...+.
T Consensus 25 ~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~-~d~~~R~~~~~F~il~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T d1w25a3 25 GDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRA-IDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVS 103 (162)
T ss_dssp SCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCT-TSEEEECSSSEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 9978999952631111044332111210135666656630487-664441489768987602320345667777788998
Q ss_pred H
Q ss_conf 9
Q T0520 83 Q 83 (189)
Q Consensus 83 ~ 83 (189)
.
T Consensus 104 ~ 104 (162)
T d1w25a3 104 G 104 (162)
T ss_dssp T
T ss_pred H
T ss_conf 6
No 7
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.08 E-value=6.8 Score=16.41 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCEEEEECCHHHHHHHH
Q ss_conf 49998999999999999999998719-7897410455024542046889999
Q T0520 24 RNETDVLNRQKLYRRELIDPAIAQAG-GQIVKTTGDGMLARFDTAQAALRCA 74 (189)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~i~~~g-G~i~k~~GDg~la~F~~~~~Av~~a 74 (189)
..++..+..+++. ...+| ..+++|.+|-+.+.|.+-+.|+++.
T Consensus 32 ~FDe~l~~~Llq~--------l~~~GeViLvRFv~d~mwVTF~dG~SAL~al 75 (95)
T d1ufwa_ 32 EFPEDLRTELMQT--------LGSYGTIVLVRINQGQMLVTFADSHSALSVL 75 (95)
T ss_dssp SCCHHHHHHHHHH--------HHHHSCCSEEEEETTEEEEECSCSHHHHHHH
T ss_pred CCCHHHHHHHHHH--------HHHCCEEEEEEEECCEEEEEECCCHHHHHHH
T ss_conf 5888999999999--------8637819999995882999987868799875
No 8
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.54 E-value=16 Score=14.34 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=48.3
Q ss_pred EEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96233547686349998999999999999999998719789--74104550245420468899999998899999873
Q T0520 12 AADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQI--VKTTGDGMLARFDTAQAALRCALEIQQAMQQREED 87 (189)
Q Consensus 12 f~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i--~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~~~~~ 87 (189)
|-|..||-+..-.++++++...+.+-...+..+...+|..+ +|--|- +++.+..--..|..+.+.+..++..
T Consensus 65 ypD~~gFGRr~~~~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGA----LYN~a~~D~~lA~ai~~ai~~~~~~ 138 (254)
T d1v6ta_ 65 YPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGA----LYNAMVKEEDLARAVIEGILDFDKD 138 (254)
T ss_dssp CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCHH----HHHHHHHCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 8673336755466788999999999999999999985990579831199----9888853899999999999973767
No 9
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]}
Probab=25.78 E-value=19 Score=13.95 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=48.1
Q ss_pred EEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96233547686349998999999999999999998719789--7410455024542046889999999889999987
Q T0520 12 AADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQI--VKTTGDGMLARFDTAQAALRCALEIQQAMQQREE 86 (189)
Q Consensus 12 f~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i--~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~~~~ 86 (189)
|-|..||-+..-.++++++...+.+-...+..+...+|+.+ +|--|- +++.+..--..|..+.+.+..++.
T Consensus 60 ypD~~gFGRr~~~~s~~el~~~v~~Qi~al~~~~~~~g~~l~hvKpHGA----LYn~~~~d~~lA~~i~~ai~~~~~ 132 (247)
T d1xw8a_ 60 FPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGM----LYNQAAKEAQLADAIARAVYACDP 132 (247)
T ss_dssp CC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCHH----HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHH----HHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 8861006755688999999999999999999999985982456334499----987750468999999999998483
No 10
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=21.28 E-value=23 Score=13.44 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=48.5
Q ss_pred EEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96233547686349998999999999999999998719789--74104550245420468899999998899999873
Q T0520 12 AADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQI--VKTTGDGMLARFDTAQAALRCALEIQQAMQQREED 87 (189)
Q Consensus 12 f~Di~~~t~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gG~i--~k~~GDg~la~F~~~~~Av~~a~~~~~~l~~~~~~ 87 (189)
|-|..||-+-.-.++++++...+.+-...+..+...+|..+ +|--|- +++.+..--..|..+.+.+..++..
T Consensus 65 ypD~~gFGRr~~~~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGA----LYn~~~~d~~lA~~i~~ai~~~~~~ 138 (250)
T d2dfaa1 65 FPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGA----LYLKACRDRETARAIALAVKAFDPG 138 (250)
T ss_dssp CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHH----HHHHHHHCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH----HHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 7624335887678998999999999999999999983994145320188----7645650889999999999861888
Done!