Query T0522 NP_384335.1, SINORHIZOBIUM MELILOTI 1021, 134 residues
Match_columns 134
No_of_seqs 115 out of 1096
Neff 6.9
Searched_HMMs 22458
Date Fri May 21 18:04:40 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0522.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0522.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4s_A Histidine triad protein 100.0 1.4E-38 6.2E-43 268.1 12.4 132 3-134 7-138 (149)
2 3i24_A HIT family hydrolase; s 100.0 1.6E-38 7E-43 267.8 12.4 132 3-134 2-133 (149)
3 2oik_A Histidine triad (HIT) p 100.0 6.6E-29 2.9E-33 205.8 7.3 119 16-134 22-144 (154)
4 1fit_A FragIle histidine prote 99.9 8.6E-26 3.8E-30 185.7 9.7 132 3-134 2-146 (147)
5 1ems_A Nitfhit, NIT-fragIle hi 99.9 1.3E-24 5.7E-29 178.2 11.2 119 15-134 310-440 (440)
6 3imi_A HIT family protein; str 99.9 9.9E-25 4.4E-29 178.9 9.5 120 13-134 22-146 (147)
7 3lb5_A HIT-like protein involv 99.9 4.3E-24 1.9E-28 174.8 11.5 116 13-134 41-161 (161)
8 1y23_A HIT, histidine triad pr 99.9 1.3E-24 5.9E-29 178.1 8.5 120 13-134 18-142 (145)
9 2eo4_A 150AA long hypothetical 99.9 4.2E-24 1.9E-28 174.8 11.0 121 12-134 11-136 (149)
10 3ksv_A Uncharacterized protein 99.9 4.9E-24 2.2E-28 174.4 10.4 118 13-134 24-146 (149)
11 3llj_A Histidine triad nucleot 99.7 7.7E-17 3.4E-21 128.1 8.6 92 13-106 28-124 (126)
12 1xqu_A HIT family hydrolase; p 99.7 4.3E-17 1.9E-21 129.7 6.2 91 13-103 48-144 (147)
13 1z84_A Galactose-1-phosphate u 99.5 3.1E-14 1.4E-18 111.3 9.4 117 10-132 221-347 (351)
14 1gup_A Galactose-1-phosphate u 99.4 3.8E-13 1.7E-17 104.3 8.9 120 11-133 207-338 (348)
15 3bl9_A Scavenger mRNA-decappin 97.6 4.4E-05 2E-09 52.4 4.7 70 31-100 176-249 (301)
16 1vlr_A MRNA decapping enzyme; 95.7 0.012 5.3E-07 36.7 4.7 66 34-99 226-295 (350)
17 2pof_A CDP-diacylglycerol pyro 89.6 0.21 9.5E-06 28.6 3.2 83 12-96 29-120 (227)
18 3gvg_A Triosephosphate isomera 42.1 16 0.00073 16.5 3.1 28 107-134 194-221 (283)
19 1b9b_A TIM, protein (triosepho 41.2 17 0.00077 16.4 3.1 28 107-134 168-195 (255)
20 2j27_A Triosephosphate isomera 40.6 17 0.00077 16.3 3.0 28 107-134 167-194 (250)
21 3krs_A Triosephosphate isomera 38.6 19 0.00087 16.0 3.1 28 107-134 188-215 (271)
22 2dp3_A Triosephosphate isomera 36.2 21 0.00095 15.8 3.0 28 107-134 170-197 (257)
23 2btm_A TIM, protein (triosepho 35.3 22 0.00098 15.7 3.0 27 107-133 166-192 (252)
24 1ney_A TIM, triosephosphate is 35.2 22 0.00098 15.7 3.0 28 107-134 164-191 (247)
25 1r2r_A TIM, triosephosphate is 34.8 22 0.00099 15.6 3.1 28 107-134 165-192 (248)
26 1aw2_A Triosephosphate isomera 33.1 24 0.0011 15.5 2.9 28 107-134 169-196 (256)
27 1yya_A Triosephosphate isomera 33.1 24 0.0011 15.5 3.1 28 107-134 166-193 (250)
28 1m6j_A TIM, TPI, triosephospha 32.3 25 0.0011 15.4 3.1 27 107-133 174-200 (261)
29 1o5x_A TIM, triosephosphate is 31.1 26 0.0011 15.3 3.1 28 107-134 165-192 (248)
30 1tre_A Triosephosphate isomera 30.8 26 0.0012 15.2 3.1 28 107-134 167-194 (255)
31 2v5b_A Triosephosphate isomera 27.8 21 0.00093 15.8 1.7 27 107-133 161-187 (244)
32 1dmz_A Protein (protein kinase 27.4 30 0.0013 14.8 2.5 39 11-49 25-63 (158)
33 2zy4_A L-aspartate beta-decarb 27.0 30 0.0013 14.8 3.9 17 117-133 502-518 (546)
34 3kxq_A Triosephosphate isomera 26.7 26 0.0011 15.2 2.0 28 107-134 190-217 (275)
35 1mo0_A TIM, triosephosphate is 25.3 32 0.0014 14.6 3.0 28 107-134 184-211 (275)
36 3c68_A Uncharacterized protein 24.8 33 0.0015 14.5 3.0 36 97-132 673-715 (761)
37 2i9e_A Triosephosphate isomera 23.7 35 0.0015 14.4 3.0 27 107-133 164-190 (259)
38 2vxn_A Triosephosphate isomera 23.6 35 0.0015 14.4 3.1 27 107-133 168-194 (251)
39 1r21_A Antigen KI-67; beta san 23.1 31 0.0014 14.7 1.9 43 10-52 30-72 (128)
40 2jgq_A Triosephosphate isomera 21.4 38 0.0017 14.1 3.4 28 107-134 158-185 (233)
41 2kfu_A RV1827 PThr 22; FHA dom 20.6 39 0.0017 14.1 1.9 43 10-52 72-114 (162)
No 1
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=100.00 E-value=1.4e-38 Score=268.11 Aligned_cols=132 Identities=42% Similarity=0.764 Sum_probs=130.1
Q ss_pred CCCCCHHHHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 76316366528876641561479851077887448873345623122089989999999999999999985244663022
Q T0522 3 TFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG 82 (134)
Q Consensus 3 ~~~l~~~l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~ 82 (134)
.|+|||+|++||++|++++.|+++|++|++|||.+||++|+|+++|+||+++++.+++..++++++++++.|+|+++|++
T Consensus 7 ~f~l~~~l~~d~~~i~~l~~~~v~L~~d~~~p~~lLVp~r~hv~~l~dL~~ee~~~l~~~~~~v~~al~~~~~~d~iN~~ 86 (149)
T 3i4s_A 7 AWSLHSRLKEDTIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA 86 (149)
T ss_dssp CCCCCHHHHHHEEEEEECSSEEEEEESCTTSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CEEECCCHHHCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 40016104208289960578389997389899899983827979805499999999999999999999997197241199
Q ss_pred HHCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3201144231132013368765786221588888889889999999999849
Q T0522 83 ALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 83 ~~g~~vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
++||+|||+|+||||||++|+.||+|+|+.+++.+++++++++++++||++|
T Consensus 87 ~~Gq~VpHlHiHIIPRy~~D~~~p~pvw~~~~~~~~~~~e~~~~~~~Ir~~L 138 (149)
T 3i4s_A 87 ALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKI 138 (149)
T ss_dssp ECCSSCCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8779736346888513369988886602678887799999999999999987
No 2
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=100.00 E-value=1.6e-38 Score=267.76 Aligned_cols=132 Identities=39% Similarity=0.680 Sum_probs=129.9
Q ss_pred CCCCCHHHHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 76316366528876641561479851077887448873345623122089989999999999999999985244663022
Q T0522 3 TFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG 82 (134)
Q Consensus 3 ~~~l~~~l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~ 82 (134)
+|+|||||++||++|+++|+|+++|+++|++||++||+||+|+++++||+++++.+++.++++++++++++++|+++|++
T Consensus 2 ~~~~d~~l~~d~~~i~~~~~~~~~l~~~~~~Pg~~Lv~pk~h~~~l~dL~~ee~~~l~~~~~~v~~al~~~~~~~~~Ni~ 81 (149)
T 3i24_A 2 AFQLHPRLQQDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG 81 (149)
T ss_dssp CCCCCHHHHHHEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCHHHHCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 85447435027289997488299984189899899985766879805499999999999999999999988481050599
Q ss_pred HHCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3201144231132013368765786221588888889889999999999849
Q T0522 83 ALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 83 ~~g~~vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
++||.|||+|+||||||+||+.||+|+|+.+.+.+++++|+++++++||++|
T Consensus 82 ~~g~~v~H~H~HlIPR~~~D~~~p~~vw~~~~~~~~~~~e~~~~~~~Ir~~L 133 (149)
T 3i24_A 82 ALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKL 133 (149)
T ss_dssp ECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHH
T ss_pred HHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8699811589999646479988887623788886599999999999999999
No 3
>2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} SCOP: d.13.1.1
Probab=99.95 E-value=6.6e-29 Score=205.80 Aligned_cols=119 Identities=25% Similarity=0.435 Sum_probs=109.9
Q ss_pred EEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHEE
Q ss_conf 66415614798510778874488733456231220899899999999999999999852446630223201144231132
Q T0522 16 PIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHV 95 (134)
Q Consensus 16 ~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~~g~~vpHlH~Hi 95 (134)
+|.+.+.|.++|+.+|.+|||+||+||+|+++++||+++++.+++..+++++++++++++++++|+.++||.|||+|+||
T Consensus 22 iv~e~~~~~v~l~~~p~~~Gh~LVipk~H~~~l~dl~~~e~~~l~~~~~~~~~~l~~~~~~~~~n~~~~g~~v~HlH~Hi 101 (154)
T 2oik_A 22 ILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLASLGNMTPHVHWHV 101 (154)
T ss_dssp EEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSSCSCEEEE
T ss_pred EEEECCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCCEEEEEE
T ss_conf 89988969999817999986999995400324766008899999889999999999971756513999778678899999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHC
Q ss_conf 01336876578622158888888----9889999999999849
Q T0522 96 IARREGDPNWPGPVWGFGKAEPW----PEEEHRTFAARIMENL 134 (134)
Q Consensus 96 IPR~~~D~~~p~~v~~~~~~~~~----~~~e~~~l~~~ir~~L 134 (134)
||||++|+.||+++|+.+.++.+ +.++.++++++|++.|
T Consensus 102 iPR~~~D~~~~~~~w~~~~~~~~~~~~~~~~~~~l~~~l~~~l 144 (154)
T 2oik_A 102 IPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVRL 144 (154)
T ss_dssp EEECTTSSSTTSCTTSCCCSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 5266788778845016787767855660999999999999876
No 4
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.93 E-value=8.6e-26 Score=185.72 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=118.9
Q ss_pred CCCCCHHHHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 76316366528876641561479851077887448873345623122089989999999999999999985244663022
Q T0522 3 TFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG 82 (134)
Q Consensus 3 ~~~l~~~l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~ 82 (134)
+|++.+.+...+.+|.+.+.|.++++.+|.+|||+||+||+|++++.||++++..+++.+++++++++++.++++++|+.
T Consensus 2 ~~~~~~~~i~p~~iiye~e~~~af~d~~P~~pgh~lViPkrH~~~l~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~ 81 (147)
T 1fit_A 2 SFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFS 81 (147)
T ss_dssp CEEETTEEECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CEECCCCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 52156733587769997899999977777998439998051349823399999999999999999999984398744898
Q ss_pred -----HHCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCC--------CCCHHHHHHHHHHHHHHC
Q ss_conf -----3201144231132013368765786221588888--------889889999999999849
Q T0522 83 -----ALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAE--------PWPEEEHRTFAARIMENL 134 (134)
Q Consensus 83 -----~~g~~vpHlH~HiIPR~~~D~~~p~~v~~~~~~~--------~~~~~e~~~l~~~ir~~L 134 (134)
..||+|+|+|+||||||+||..++..+|+...+. ..+.+|+.+++++||+.+
T Consensus 82 ~~~g~~agq~v~HlH~HiiPR~~~D~~~~~~~~~~~~~~~~~~~~~~~r~~ee~~~~a~~lr~~~ 146 (147)
T 1fit_A 82 MQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAAALRVYF 146 (147)
T ss_dssp ECCSGGGTCCSSSCCEEEEEECTTC--------------------CCCCCHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 70675557886689999966877876456402356644253342202688999999999999853
No 5
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.92 E-value=1.3e-24 Score=178.19 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=104.3
Q ss_pred EEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHCCHHH
Q ss_conf 76641561479851077887448873345623122089989999999999999999985244663022-----3201144
Q T0522 15 IPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNIVR 89 (134)
Q Consensus 15 ~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-----~~g~~vp 89 (134)
.+|.+++.+.++|+.+|..|||+||+||+|++++.||++++..+++..++++++++++.++++++|+. .+||+||
T Consensus 310 ~~~~e~~~~~af~d~~p~~~gh~lvipk~h~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~agq~v~ 389 (440)
T 1ems_A 310 HIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVP 389 (440)
T ss_dssp GEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSS
T ss_pred EEEEECCCEEEEECCCCCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 39997896699857888887518999621229925699999999999999999999984299846999817823387667
Q ss_pred HHHHEEECCCCCCCCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 23113201336876578622158-------8888889889999999999849
Q T0522 90 QLHVHVIARREGDPNWPGPVWGF-------GKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 90 HlH~HiIPR~~~D~~~p~~v~~~-------~~~~~~~~~e~~~l~~~ir~~L 134 (134)
|+|+||||||++|+.+.. +|.. ..+.+-+.+|+.+.+++||+.|
T Consensus 390 H~H~HiiPr~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~a~~lR~~l 440 (440)
T 1ems_A 390 HVHIHILPRRAGDFGDNE-IYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM 440 (440)
T ss_dssp SCCEEEEEECSSCC--------------------CCCHHHHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCCCCCH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 799999467789777422-777642113320037888999999999999519
No 6
>3imi_A HIT family protein; structural genomics, infectious diseases, center for structural genomics of infectious diseases, unknown function; 2.01A {Bacillus anthracis str}
Probab=99.91 E-value=9.9e-25 Score=178.90 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=108.3
Q ss_pred CCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHCCH
Q ss_conf 8876641561479851077887448873345623122089989999999999999999985244663022-----32011
Q T0522 13 DGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNI 87 (134)
Q Consensus 13 d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-----~~g~~ 87 (134)
.+.+|.|.+.|.++++.+|..|||+||+||+|++++.||++++..+++..++++++++++.++++++|+. ..||+
T Consensus 22 p~~~v~e~~~~~afld~~P~~~GH~LViPk~H~~~l~~l~~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~agq~ 101 (147)
T 3imi_A 22 LCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQT 101 (147)
T ss_dssp CCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEEEEEEESGGGTCC
T ss_pred CCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEE
T ss_conf 75668878989999778889984499995555587255899999999999999999998615998519974567567820
Q ss_pred HHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44231132013368765786221588888889889999999999849
Q T0522 88 VRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 88 vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
|||+|+||||||++|..|+ ..|. ..+...+++|+++++++||++|
T Consensus 102 V~H~H~HviPR~~~d~~~~-~~~~-~~~~~~~~ee~~~l~~~ir~~l 146 (147)
T 3imi_A 102 VFHFHLHLIPRYGENDGFG-AVWK-SHQNEYTMENLQNIASTIANSV 146 (147)
T ss_dssp SSSCCEEEEEECSTTCSEE-EEEC-CCGGGCCHHHHHHHHHHHHHHC
T ss_pred ECEEEEEEECCCCCCCCCC-CCCC-CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 2668999976544889865-2467-6778899999999999999964
No 7
>3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle structural genomics center for infectious disease, ssgcid; 1.90A {Bartonella henselae}
Probab=99.91 E-value=4.3e-24 Score=174.81 Aligned_cols=116 Identities=20% Similarity=0.117 Sum_probs=105.5
Q ss_pred CCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HCCH
Q ss_conf 88766415614798510778874488733456231220899899999999999999999852446630223-----2011
Q T0522 13 DGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGA-----LGNI 87 (134)
Q Consensus 13 d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~-----~g~~ 87 (134)
.+.+|-|.+.+.++++.+|..|||+||+||+|+++++||+++++.+++..++++++++++.++++++|+.. .||+
T Consensus 41 pa~iVyEde~~~afld~~P~~~GH~LVIPK~H~~~l~dl~~~e~~~l~~~~~~v~~al~~~~~~~~~ni~~n~g~~agq~ 120 (161)
T 3lb5_A 41 PSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQT 120 (161)
T ss_dssp CCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEESGGGTCC
T ss_pred CCCEEEECCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEE
T ss_conf 87779978989999888889974599995316685665247888999999999987642032578988985576777730
Q ss_pred HHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44231132013368765786221588888889889999999999849
Q T0522 88 VRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 88 vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
|||+|+||||||+||..|+ ..+...++++++++++|||++|
T Consensus 121 V~HlHiHIIPR~~gd~~~~------~~~~~~~~e~le~~a~kIR~aL 161 (161)
T 3lb5_A 121 VYHLHFHIIPRMEGIELTP------HNNIITPTEILEENAKKIRAAL 161 (161)
T ss_dssp SCSCCEEEEEECTTCCC------------CCCHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEECCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 4366999889868998887------7775589999999999999609
No 8
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.91 E-value=1.3e-24 Score=178.08 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=108.5
Q ss_pred CCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHCCH
Q ss_conf 8876641561479851077887448873345623122089989999999999999999985244663022-----32011
Q T0522 13 DGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNI 87 (134)
Q Consensus 13 d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-----~~g~~ 87 (134)
.+.+|.|.+.+.++++.+|..|||+||+||+|+.++.||+++++.+++..++++++++++.++++|+|+. ..||+
T Consensus 18 p~~~i~e~e~~~a~~d~~P~~~GH~LViPk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~g~ni~~n~g~~agq~ 97 (145)
T 1y23_A 18 PSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQS 97 (145)
T ss_dssp CCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGTCC
T ss_pred CCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEE
T ss_conf 75779878989999746889984799973444465211105788999999999999877400557718886677420787
Q ss_pred HHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44231132013368765786221588888889889999999999849
Q T0522 88 VRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 88 vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
|||+|+||||||++|..| +++|.. ....++++|+++++++||++|
T Consensus 98 V~HlH~HiiPR~~~~~~~-~~~~~~-~~~~~~~ee~~~~a~~Ir~~L 142 (145)
T 1y23_A 98 VFHYHMHIIPRYGKGDGF-GAVWKT-HADDYKPEDLQNISSSIAKRL 142 (145)
T ss_dssp SSSCCEEEEEECSTTCSE-EEEECC-CGGGSCHHHHHHHHHHHHHHT
T ss_pred ECEEEEEEECCCCCCCCC-CCCCCC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf 078999997243289875-535676-778789999999999999986
No 9
>2eo4_A 150AA long hypothetical histidine triad nucleotide-binding protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.91 E-value=4.2e-24 Score=174.82 Aligned_cols=121 Identities=21% Similarity=0.172 Sum_probs=104.5
Q ss_pred HCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHCC
Q ss_conf 28876641561479851077887448873345623122089989999999999999999985244663022-----3201
Q T0522 12 RDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGN 86 (134)
Q Consensus 12 ~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-----~~g~ 86 (134)
..+.+|.|.+.+.++++.+|..|||+||+||+|++++.||+++++.+++.+++++++++++.++++++|+. .+||
T Consensus 11 ~~~~iv~e~d~~~a~~d~~P~~~GH~LViPk~H~~~l~dl~~~e~~~l~~~~~~~~~~l~~~~~~~~~ni~~n~g~~agq 90 (149)
T 2eo4_A 11 LEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQ 90 (149)
T ss_dssp SCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTC
T ss_pred CCCCEEEECCCEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 87687998998999976898998359999761766304453679999999999999999964789946999825766686
Q ss_pred HHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 144231132013368765786221588888889889999999999849
Q T0522 87 IVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 87 ~vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
+|||+|+||||||++|.. ...+........+++..+.++++||++|
T Consensus 91 ~v~H~H~HiiPR~~~d~~--~~~~~~~~~~~~~~e~~~~~~~~ire~l 136 (149)
T 2eo4_A 91 VIFHLHVHIIPTWEGDYP--DIFKSFKPRKEQEKEYYELLQKIIRESI 136 (149)
T ss_dssp CSCSCCEEEEEECSSCCC--TTSCCCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 538899998687589877--5233557566782999999999999999
No 10
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 1.90A {Leishmania major}
Probab=99.91 E-value=4.9e-24 Score=174.40 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=106.5
Q ss_pred CCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHCCH
Q ss_conf 8876641561479851077887448873345623122089989999999999999999985244663022-----32011
Q T0522 13 DGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNI 87 (134)
Q Consensus 13 d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-----~~g~~ 87 (134)
.+.+|.|.+.+.++++.+|..|||+||+||+|+++++||++++..+++.+++++++++++.++++++|+. .+||+
T Consensus 24 ~~~iv~Ede~~~afld~~P~~~GH~LViPK~H~~~~~dl~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~agq~ 103 (149)
T 3ksv_A 24 PCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQE 103 (149)
T ss_dssp CCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCC
T ss_pred CCCEEEECCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEE
T ss_conf 76779979989999767889995499718877642667778899999999999999998503885289998424537777
Q ss_pred HHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44231132013368765786221588888889889999999999849
Q T0522 88 VRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 88 vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
|||+|+||||||++|..+. ..| .+..++++++.+++++||++|
T Consensus 104 V~H~H~HviPR~~~~~~~~-~~~---~~~~~~~e~~~e~a~kir~al 146 (149)
T 3ksv_A 104 VPHVHFHIIPKTDEKTGLK-IGW---DTVKVASDELAEDAKRYSEAI 146 (149)
T ss_dssp SSSCCEEEEEECCTTSSCC-CCC---CCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCCCCCC-CCC---CCCCCCHHHHHHHHHHHHHHH
T ss_conf 5677999990136999862-378---876769999999999999999
No 11
>3llj_A Histidine triad nucleotide-binding protein 1; HINT protein, HIT protein, hydrolase, adenosine 5'- monophosphoramidase, cytoplasm; HET: ADN; 1.10A {Oryctolagus cuniculus} PDB: 1rzy_A* 1kpe_B* 1kpb_A* 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.68 E-value=7.7e-17 Score=128.09 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=83.5
Q ss_pred CCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHCCH
Q ss_conf 8876641561479851077887448873345623122089989999999999999999985244663022-----32011
Q T0522 13 DGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNI 87 (134)
Q Consensus 13 d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-----~~g~~ 87 (134)
.+.+|.|.+.+.++++.+|..|||+||+||+|+.++.||++++...++...+.+.+++++.+.++++|+. ..||+
T Consensus 28 p~~ivyEde~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~g~~agq~ 107 (126)
T 3llj_A 28 PAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQS 107 (126)
T ss_dssp CCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHTCC
T ss_pred CCCEEEECCCEEEEECCCCCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEE
T ss_conf 77889879979999878989996199984601336221561779999999999999999865787658988678647686
Q ss_pred HHHHHHEEECCCCCCCCCC
Q ss_conf 4423113201336876578
Q T0522 88 VRQLHVHVIARREGDPNWP 106 (134)
Q Consensus 88 vpHlH~HiIPR~~~D~~~p 106 (134)
|+|+|+|||||.+ ..||
T Consensus 108 V~HlH~HiiP~~~--l~wp 124 (126)
T 3llj_A 108 VYHVHLHVLGGRQ--MNWP 124 (126)
T ss_dssp SSSCCEEEEESSC--CCSS
T ss_pred EEEEEEEEECCCC--CCCC
T ss_conf 4171899968986--7999
No 12
>1xqu_A HIT family hydrolase; protein structure initiative, PSI, southeast collaboratory for structural genomics, secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.67 E-value=4.3e-17 Score=129.70 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=80.4
Q ss_pred CCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHH-----HHCC
Q ss_conf 8876641561479851077887448873345623122089989999999999999999985-244663022-----3201
Q T0522 13 DGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKA-TGAEKINIG-----ALGN 86 (134)
Q Consensus 13 d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~-~~~~~in~~-----~~g~ 86 (134)
.+.+|.|.+.+.++++.+|..|||+||+||+|+.++.||++++...++.+.+.+.+++++. ..++++|+. .+||
T Consensus 48 p~~iVyEde~~~aflDi~P~~pgH~LVIPK~H~~~l~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~i~~n~G~~aGQ 127 (147)
T 1xqu_A 48 PSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQ 127 (147)
T ss_dssp CBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCEEEECCCSTTTTC
T ss_pred CCCEEEECCCEEEEECCCCCCCCEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 75679868978999807999984499873013323422002469999999999999999829999888898747415766
Q ss_pred HHHHHHHEEECCCCCCC
Q ss_conf 14423113201336876
Q T0522 87 IVRQLHVHVIARREGDP 103 (134)
Q Consensus 87 ~vpHlH~HiIPR~~~D~ 103 (134)
+|+|+|+|||||++.+|
T Consensus 128 sV~HlHlHIIP~~~lgp 144 (147)
T 1xqu_A 128 TVFHLHYHLLGGVDMGP 144 (147)
T ss_dssp CSCSCCEEEEESSCCCS
T ss_pred CCCEEEEEECCCCCCCC
T ss_conf 44750899617844677
No 13
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.53 E-value=3.1e-14 Score=111.32 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=94.8
Q ss_pred HHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH------
Q ss_conf 65288766415614798510778874488733456231220899899999999999999999852446630223------
Q T0522 10 LERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGA------ 83 (134)
Q Consensus 10 l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~------ 83 (134)
+.....+|.+.+.+.+++...+.+|||++|+||+|+.++.||++++..+|..+++++.+.+++.++...+|++.
T Consensus 221 ~~~~~riv~e~~~~~a~~p~ap~~p~h~lIiPk~h~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~i~~~P~~ 300 (351)
T 1z84_A 221 AKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLK 300 (351)
T ss_dssp HHHHSEEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCTT
T ss_pred HHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 31132147525868998546774100130356511466210999999999999999999999854999836899835778
Q ss_pred ---HCCHHHHHHHEEECCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf ---2011442311320133687657862215888-888898899999999998
Q T0522 84 ---LGNIVRQLHVHVIARREGDPNWPGPVWGFGK-AEPWPEEEHRTFAARIME 132 (134)
Q Consensus 84 ---~g~~vpHlH~HiIPR~~~D~~~p~~v~~~~~-~~~~~~~e~~~l~~~ir~ 132 (134)
.++.+.|+|+||+||++++.. .-+|.+. -.+.++|+. |++||+
T Consensus 301 ~~~~~~~~~H~hihi~PR~~~~ag---fE~g~g~~in~v~PE~a---A~~LR~ 347 (351)
T 1z84_A 301 VTESQLPYTHWFLQIVPQLSGVGG---FEIGTGCYINPVFPEDV---AKVMRE 347 (351)
T ss_dssp CCGGGGGGCCCEEEEEECCCCCCH---HHHHHSCCEESSCHHHH---HHHHHH
T ss_pred CCCCCCCEEEEEEEECCCCCCCCC---CCEECCCEECCCCHHHH---HHHHHH
T ss_conf 755688446899996378877240---24014744358999999---999972
No 14
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.44 E-value=3.8e-13 Score=104.27 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=93.6
Q ss_pred HHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHH-----H
Q ss_conf 528876641561479851077887448873345623122089989999999999999999985244-6630223-----2
Q T0522 11 ERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGA-EKINIGA-----L 84 (134)
Q Consensus 11 ~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~-~~in~~~-----~ 84 (134)
+....+|.+.+.+.++....+.+||+++|+||+|+.++.||++++..++...++++.+.+.+.++. .++|+.. .
T Consensus 207 ~~~~RiV~e~~~~~af~p~ap~~P~ev~IiPk~h~~~~~~l~~~e~~~la~~l~~v~~~l~~~~~~~~~yn~~~~~~p~~ 286 (348)
T 1gup_A 207 ADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFN 286 (348)
T ss_dssp HHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSS
T ss_pred CCCCEEEEECCCEEEEEECCCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 45543686379689995047788755898358777990779999999999999999999986257999869997538877
Q ss_pred CCHHH--HHHHEEECCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 01144--23113201336876578622----158888888988999999999984
Q T0522 85 GNIVR--QLHVHVIARREGDPNWPGPV----WGFGKAEPWPEEEHRTFAARIMEN 133 (134)
Q Consensus 85 g~~vp--HlH~HiIPR~~~D~~~p~~v----~~~~~~~~~~~~e~~~l~~~ir~~ 133 (134)
|+.++ |+|+||+||+..++...+.. ++.+.-.+..+|+ .+++||+.
T Consensus 287 ~~~~~~~H~Hi~i~Pr~~r~~~~~k~~ag~E~~~g~~~~v~PE~---~A~~LR~~ 338 (348)
T 1gup_A 287 GEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQ---AAERLRAV 338 (348)
T ss_dssp SSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHHTCCEESSCHHH---HHHHHHTS
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCHHH---HHHHHHHH
T ss_conf 88784379999984876567986424577523153026887999---99999801
No 15
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=97.65 E-value=4.4e-05 Score=52.39 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=54.7
Q ss_pred CCCCEEEEEECCC-CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHH-HCCHHHHHHHEEECCCC
Q ss_conf 7887448873345-6231220899899999999999999999852446--630223-20114423113201336
Q T0522 31 RRWPWLILVPQRA-DIKEVFELTPLDQAMLTFETNLVAAGLKKATGAE--KINIGA-LGNIVRQLHVHVIARRE 100 (134)
Q Consensus 31 ~~~PG~~LV~pk~-Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~--~in~~~-~g~~vpHlH~HiIPR~~ 100 (134)
+.-.-|+|++|++ |+.++.||+++...-|..+...+.+++.+.++.+ ++.+.. .+.+++|+|+|++...-
T Consensus 176 ~~~~LHlL~Ip~r~~I~SLrdL~~eHlpLL~~m~~~~~~vi~~~ygi~~d~~Ri~~Hy~PS~yHLHvHvv~v~~ 249 (301)
T 3bl9_A 176 QLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGF 249 (301)
T ss_dssp CSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSCSSSSCEEEEEETTS
T ss_pred CCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCEEEEEEEECCC
T ss_conf 30256999997768989827788989999999999999999996099801179999289983117999984467
No 16
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=95.68 E-value=0.012 Score=36.74 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=48.4
Q ss_pred CEEEEEECCC-CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HH-HCCHHHHHHHEEECCC
Q ss_conf 7448873345-62312208998999999999999999998524466302--23-2011442311320133
Q T0522 34 PWLILVPQRA-DIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINI--GA-LGNIVRQLHVHVIARR 99 (134)
Q Consensus 34 PG~~LV~pk~-Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~--~~-~g~~vpHlH~HiIPR~ 99 (134)
-=|+|+++++ .+.++.||..+...=|-.+.+.+.+++.+.++.+.-.+ .+ .--+..|||+|++..-
T Consensus 226 ~LhLLaI~~r~dI~SLRDL~~~HlplLk~m~~~~~~~i~~~ygi~~d~lRlyvHYqPSyyHLHvHiv~v~ 295 (350)
T 1vlr_A 226 DLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALG 295 (350)
T ss_dssp TCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSCSSSSCEEEEEETT
T ss_pred CEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCEEEEEEECC
T ss_conf 1589999866888872668686899999999999999999839986787999806997454699997335
No 17
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis, structural genomics; 1.40A {Escherichia coli O157} SCOP: d.13.1.4
Probab=89.55 E-value=0.21 Score=28.64 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=54.5
Q ss_pred HCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHH------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH--
Q ss_conf 288766415614798510778874488733456231220------899899999999999999999852446630223--
Q T0522 12 RDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFE------LTPLDQAMLTFETNLVAAGLKKATGAEKINIGA-- 83 (134)
Q Consensus 12 ~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~d------L~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~-- 83 (134)
..|..+..-. .+ .+.+|..-|-+-|++|...++.+.+ -++..+..=|..-..+++.+.+...-+.+..++
T Consensus 29 ~pC~~Vd~~~-gy-vvlKD~~G~~qyLLiPt~rIsGIEsP~Ll~~~~pnyf~~AW~aR~~v~~~~g~~ipd~~lsLaINS 106 (227)
T 2pof_A 29 SPCAEVKPNA-GY-VVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINS 106 (227)
T ss_dssp TTSSEEETTT-TE-EEEECSSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBC
T ss_pred CCCEEEECCC-CE-EEECCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 9980780678-96-998079987327885155546753841327898518999998717989973898882015788537
Q ss_pred -HCCHHHHHHHEEE
Q ss_conf -2011442311320
Q T0522 84 -LGNIVRQLHVHVI 96 (134)
Q Consensus 84 -~g~~vpHlH~HiI 96 (134)
.|-+-.||||||=
T Consensus 107 ~~gRSQnQLHIHI~ 120 (227)
T 2pof_A 107 RTGRTQNHFHIHIS 120 (227)
T ss_dssp GGGCSCCSCCEEEE
T ss_pred CCCCCCCCEEEEHH
T ss_conf 87866022140376
No 18
>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis}
Probab=42.09 E-value=16 Score=16.52 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....++++.+++...||..|
T Consensus 194 EPvWAIGTG~~a~~~~i~~~~~~Ir~~l 221 (283)
T 3gvg_A 194 EPVWAIGTGRVASAADAQEVCAAIRKEL 221 (283)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3410236666687688899999999999
No 19
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=41.16 E-value=17 Score=16.37 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++..++...||+.|
T Consensus 168 EPvWAIGtG~~a~~~~i~~~~~~Ir~~l 195 (255)
T 1b9b_A 168 EPVWAIGTGRVATPQQAQEVHAFIRKLL 195 (255)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6655206898998188999999999999
No 20
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ...
Probab=40.64 E-value=17 Score=16.34 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++..++...||..|
T Consensus 167 EPvWAIGtG~~as~~~i~~~~~~Ir~~l 194 (250)
T 2j27_A 167 EAVWAIGTGKVATPQQAQEAHALIRSWV 194 (250)
T ss_dssp ECGGGTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7545307898898177999999999999
No 21
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=38.60 E-value=19 Score=16.02 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....++++..++.+.||+.|
T Consensus 188 EPvWAIGtG~~as~~~i~~~~~~Ir~~l 215 (271)
T 3krs_A 188 EPIWAIGTGVVATPGQAQEAHAFIREYV 215 (271)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5244216786676310024688999999
No 22
>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis}
Probab=36.17 E-value=21 Score=15.78 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....++++..++...||+.|
T Consensus 170 EPvWAIGtG~~a~~~~i~e~~~~Ir~~l 197 (257)
T 2dp3_A 170 EPVWSIGTGVVATPEQAEEVHVGLRKWF 197 (257)
T ss_dssp CCGGGTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5500135554456133333578999999
No 23
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=35.31 E-value=22 Score=15.69 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 622158888888988999999999984
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMEN 133 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~ 133 (134)
.|+|..++....++++..++.+.||+-
T Consensus 166 EPvWAIGtG~~a~~~~i~e~~~~Ir~~ 192 (252)
T 2btm_A 166 EPIWAIGTGKSSTPEDANSVCGHIRSV 192 (252)
T ss_dssp CCGGGTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 311113555678826665567889988
No 24
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=35.24 E-value=22 Score=15.69 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++..++...||..|
T Consensus 164 EPvWAIGtG~~as~~~i~~~~~~Ir~~l 191 (247)
T 1ney_A 164 EPVXAIGTGLAATPEDAQDIHASIRKFL 191 (247)
T ss_dssp CCGGGTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6630457899999899999999999999
No 25
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=34.81 E-value=22 Score=15.64 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++..+....||..|
T Consensus 165 EPvWAIGtG~~a~~~~i~~~~~~Ir~~l 192 (248)
T 1r2r_A 165 EPVWAIGTGKTATPQQAQEVHEKLRGWL 192 (248)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6686127899998499999999999999
No 26
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=33.10 E-value=24 Score=15.47 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....+.++..++...||+.|
T Consensus 169 EPvWAIGtG~~a~~~~i~~~~~~Ir~~l 196 (256)
T 1aw2_A 169 EPIWAIGTGKAATAEDAQRIHAQIRAHI 196 (256)
T ss_dssp CCTTTTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6366407898998587999999999998
No 27
>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8}
Probab=33.09 E-value=24 Score=15.47 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....++++..++...||+.|
T Consensus 166 EPvWAIGtg~~a~~~~i~~~~~~Ir~~l 193 (250)
T 1yya_A 166 EPVWAIGTGKNATPEDAEAMHQAIRKAL 193 (250)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4333015787777066777788999999
No 28
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=32.29 E-value=25 Score=15.38 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 622158888888988999999999984
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMEN 133 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~ 133 (134)
.|+|..++....++++.+++...||..
T Consensus 174 EPvWAIGtG~~a~~~~i~~~~~~Ir~~ 200 (261)
T 1m6j_A 174 EPVWAIGTGKTATPDQAQEVHQYIRKW 200 (261)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 656621689999999999999999999
No 29
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A*
Probab=31.07 E-value=26 Score=15.25 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++..++...||+.|
T Consensus 165 EPvWAIGtG~~a~~~~i~e~~~~Ir~~l 192 (248)
T 1o5x_A 165 EPLWAIGTGKTATPEQAQLVHKEIRKIV 192 (248)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7676426899899899999999999999
No 30
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=30.79 E-value=26 Score=15.22 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++..++.+.||+.|
T Consensus 167 EPvWAIGtg~~a~~~~i~~~~~~ir~~l 194 (255)
T 1tre_A 167 EPVWAIGTGKSATPAQAQAVHKFIRDHI 194 (255)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 2333205554667520134668888888
No 31
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=27.83 E-value=21 Score=15.82 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 622158888888988999999999984
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMEN 133 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~ 133 (134)
.|+|..++....++++.+++...||..
T Consensus 161 EPvWAIGtG~~a~~~~i~~~~~~Ir~~ 187 (244)
T 2v5b_A 161 EPVWAIGTGKVATPQQAQEVHELLRRW 187 (244)
T ss_dssp CCHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 532113445455630233457899999
No 32
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=27.38 E-value=30 Score=14.85 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.4
Q ss_pred HHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHH
Q ss_conf 528876641561479851077887448873345623122
Q T0522 11 ERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVF 49 (134)
Q Consensus 11 ~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~ 49 (134)
..+.+.|||.+.|.+.+....-.-=||.|..+++.....
T Consensus 25 ~~~~~~IGR~~~cdi~i~~~~VSr~Hc~i~~~~~~~~~~ 63 (158)
T 1dmz_A 25 GVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKS 63 (158)
T ss_dssp SCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCC
T ss_pred CCCEEEECCCCCCCEEECCCCCCCCCEEEEEECCCCCCC
T ss_conf 997089668878878968876265017999962665211
No 33
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=27.00 E-value=30 Score=14.80 Aligned_cols=17 Identities=12% Similarity=0.007 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 88988999999999984
Q T0522 117 PWPEEEHRTFAARIMEN 133 (134)
Q Consensus 117 ~~~~~e~~~l~~~ir~~ 133 (134)
.++++++.++...||+-
T Consensus 502 nl~e~~~~~I~~~ir~~ 518 (546)
T 2zy4_A 502 NLNEYEYAAIGRALRKM 518 (546)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 79978999999999999
No 34
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.60A {Bartonella henselae}
Probab=26.66 E-value=26 Score=15.24 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....++++..++.+.||..|
T Consensus 190 EPvWAIGTG~~a~~~~i~~~~~~Ir~~l 217 (275)
T 3kxq_A 190 EPVWAVGTGNTATSADVAEVHAFIHHKM 217 (275)
T ss_dssp CCCC--------CHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6644126899998299999999999999
No 35
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=25.28 E-value=32 Score=14.60 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....+.++..++...||+.|
T Consensus 184 EPvWAIGtG~~a~~e~i~e~~~~Ir~~l 211 (275)
T 1mo0_A 184 EPVWAIGTGKTASGEQAQEVHEWIRAFL 211 (275)
T ss_dssp CCGGGTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7654037899999999999999999999
No 36
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=24.77 E-value=33 Score=14.54 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHH
Q ss_conf 13368765786221588-------8888898899999999998
Q T0522 97 ARREGDPNWPGPVWGFG-------KAEPWPEEEHRTFAARIME 132 (134)
Q Consensus 97 PR~~~D~~~p~~v~~~~-------~~~~~~~~e~~~l~~~ir~ 132 (134)
|+|..+.+|.||+|... -+.....++..+++.++..
T Consensus 673 p~f~p~~YWrGPvW~~~n~lii~gL~ryG~~e~A~~La~~ll~ 715 (761)
T 3c68_A 673 PAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFR 715 (761)
T ss_dssp TTCCTTCTTTTCEEHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 6779999868877699999999999997999999999999999
No 37
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=23.67 E-value=35 Score=14.41 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 622158888888988999999999984
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMEN 133 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~ 133 (134)
.|+|..+.....++++..++...||+.
T Consensus 164 EPvWAIGtG~~a~~~~i~e~~~~Ir~~ 190 (259)
T 2i9e_A 164 EPVWAIGTGKTATPQQAQDVHKALRQW 190 (259)
T ss_dssp CCGGGTTSSSCCCHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 763323789999817899999999999
No 38
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=23.62 E-value=35 Score=14.40 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 622158888888988999999999984
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMEN 133 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~ 133 (134)
.|+|..+.....++++..++...||..
T Consensus 168 EPvWAIGtG~~a~~~~i~~~~~~Ir~~ 194 (251)
T 2vxn_A 168 EPVWAIGTGKVATPEQAQEVHLLLRKW 194 (251)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 657730789889989999999999999
No 39
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=23.09 E-value=31 Score=14.68 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=32.4
Q ss_pred HHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCC
Q ss_conf 6528876641561479851077887448873345623122089
Q T0522 10 LERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELT 52 (134)
Q Consensus 10 l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~ 52 (134)
|.+..+.||+.+.|.+.|....-.+-|+.+..+...-.+.|+.
T Consensus 30 l~~~~~~IGr~~~~di~l~d~~vSr~Ha~i~~~~~~~~l~dl~ 72 (128)
T 1r21_A 30 LSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHEQEAILHNFS 72 (128)
T ss_dssp CCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSCEEECCCC
T ss_pred ECCCCEEECCCCCCCEEECCCCCCHHHEEEEEECCCEEEEECC
T ss_conf 6898889847878889948811071334999968933999788
No 40
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=21.39 E-value=38 Score=14.12 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..+.....++++..++...||..+
T Consensus 158 EPvWAIGtg~~a~~~~i~~~~~~Ir~~~ 185 (233)
T 2jgq_A 158 EPIWAIGTKKSASLEDIYLTHGFLKQIL 185 (233)
T ss_dssp CCGGGTTC--CCCHHHHHHHHHHHHHHS
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8502016787788799999999999986
No 41
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=20.60 E-value=39 Score=14.12 Aligned_cols=43 Identities=9% Similarity=-0.074 Sum_probs=30.8
Q ss_pred HHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCC
Q ss_conf 6528876641561479851077887448873345623122089
Q T0522 10 LERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELT 52 (134)
Q Consensus 10 l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~ 52 (134)
|.++.+.||+.+.|.+.|.+..-.+-|+.|..+..--.+.||.
T Consensus 72 l~~~~~~iGR~~~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~ 114 (162)
T 2kfu_A 72 LDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVDVG 114 (162)
T ss_dssp TTSSEEEEESCSSSSEESTTTSSSSCSEEEEEETTEEEEECCC
T ss_pred ECCCCEEEEECCCCCEECCCCCCCHHHEEEEEECCEEEEEECC
T ss_conf 7998789812747870868864183258999958908887789
Done!