Query         T0522 NP_384335.1, SINORHIZOBIUM MELILOTI 1021, 134 residues
Match_columns 134
No_of_seqs    115 out of 1096
Neff          6.9 
Searched_HMMs 11830
Date          Fri May 21 18:06:21 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0522.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0522.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF01230 HIT:  HIT domain;  Int  99.8 1.7E-21 1.4E-25  156.3   6.6   91   10-100     2-97  (98)
  2 PF11969 DcpS_C:  Scavenger mRN  98.5 8.6E-08 7.3E-12   68.0   5.2   84   15-98     15-102 (114)
  3 PF04677 CwfJ_C_1:  Protein sim  98.3 7.9E-07 6.7E-11   61.8   6.8   97    3-100    14-110 (121)
  4 PF02744 GalP_UDP_tr_C:  Galact  97.3 0.00029 2.5E-08   45.3   7.1   67   11-77     26-92  (166)
  5 PF02611 CDH:  CDP-diacylglycer  89.7    0.14 1.1E-05   28.1   3.7   85   11-97     50-143 (249)
  6 PF01076 Mob_Pre:  Plasmid reco  83.1       1 8.5E-05   22.5   5.2   75   47-132    91-168 (196)
  7 PF00121 TIM:  Triosephosphate   36.9     7.9 0.00067   16.8   2.2   28  107-134   164-191 (244)
  8 PF03432 Relaxase:  Relaxase/Mo  32.3      13  0.0011   15.4   3.4   59   32-102    54-115 (242)
  9 PF07095 IgaA:  Intracellular g  26.3      14  0.0012   15.2   2.0   66   30-98    570-647 (705)
 10 PF04986 Transposase_32:  Putat  26.1      16  0.0014   14.7   3.2   16   51-66     48-63  (183)

No 1  
>PF01230 HIT:  HIT domain;  InterPro: IPR001310 The Histidine Triad (HIT) motif, His-phi-His-phi-His-phi-phi (phi, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms . Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologs, which are found in all forms of life, are structurally related to Fhit homologs and GalT-related enzymes, which have more restricted phylogenetic profiles . Hint homologs including rabbit Hint and yeast Hnt1 hydrolyze adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo . Fhit homologs are diadenosine polyphosphate hydrolases  and function as tumor suppressors in human and mouse  though the tumor suppressing function of Fhit does not depend on ApppA hydrolysis . The third branch of the HIT superfamily, which includes GalT homologs, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moeities to phosphorylated second substrates rather than hydrolyzing them . ; PDB: 6rhn_A 3rhn_A 1rzy_A 4rhn_A 5rhn_A 1kpe_B 1av5_B 1kpa_B 1kpf_A 1kpc_B ....
Probab=99.83  E-value=1.7e-21  Score=156.34  Aligned_cols=91  Identities=30%  Similarity=0.301  Sum_probs=86.5

Q ss_pred             HHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----H
Q ss_conf             65288766415614798510778874488733456231220899899999999999999999852446630223-----2
Q T0522            10 LERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGA-----L   84 (134)
Q Consensus        10 l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~-----~   84 (134)
                      .+.++.+|.+.+.|.++|+.+|.+|||+||+||+|+++++||+++++.+++..++++++++++.++++++|+..     +
T Consensus         2 ~e~~~~iv~e~~~~~a~l~~~p~~pgh~LVipk~h~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ng~~~   81 (98)
T PF01230_consen    2 GEIPSRIVYEDDHVVAFLDINPISPGHVLVIPKRHVSSLFDLTPEERAELMDLVQKVAKALKKVFGPDGYNIGINNGPAA   81 (98)
T ss_dssp             TSSGGGEEEE-SSEEEEE-SSTSSSS-EEEEESS--SSGGGS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEEEE-
T ss_pred             CCCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHH
T ss_conf             98882399989979999848899984999961503297333999999999999999999975445610202201351321


Q ss_pred             CCHHHHHHHEEECCCC
Q ss_conf             0114423113201336
Q T0522            85 GNIVRQLHVHVIARRE  100 (134)
Q Consensus        85 g~~vpHlH~HiIPR~~  100 (134)
                      ||.+||+|+||||||+
T Consensus        82 gq~v~HlH~HiIPR~~   97 (98)
T PF01230_consen   82 GQSVPHLHFHIIPRYK   97 (98)
T ss_dssp             ---SSS-EEEEEEE-T
T ss_pred             CCCCCEEEEEEECCCC
T ss_conf             6851579999815637


No 2  
>PF11969 DcpS_C:  Scavenger mRNA decapping enzyme C-term binding; PDB: 1vlr_A 1xmm_C 3bla_A 3bl7_B 1st0_B 3bl9_B 1xml_A 1st4_B 1xqu_A.
Probab=98.46  E-value=8.6e-08  Score=68.03  Aligned_cols=84  Identities=19%  Similarity=0.140  Sum_probs=69.4

Q ss_pred             EEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHH-HCCHHHH
Q ss_conf             7664156147985107788744887334562312208998999999999999999998524---46630223-2011442
Q T0522            15 IPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATG---AEKINIGA-LGNIVRQ   90 (134)
Q Consensus        15 ~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~---~~~in~~~-~g~~vpH   90 (134)
                      -++-+.+.+.++-+..|..|.|+||+||+|++++.||+++...-+..+.....+.+++.+.   ...+|++. .++++.|
T Consensus        15 ~ilyed~~~v~~~D~~p~a~~H~Lvipk~~i~sl~~L~~~~~~lL~~m~~~~~~~i~~~~~~~~~~~~~~gfH~~ps~~H   94 (114)
T PF11969_consen   15 RILYEDDDFVAFKDIYPKAPVHLLVIPKRHIPSLRDLTPEHLPLLEHMREVARKIIEEQYPELFRDDFRIGFHYPPSVYH   94 (114)
T ss_dssp             GESEE-SSEEEEE-TT-SCCSEEEEEESS--SSGGG--GGGHHHHHHHHHHHHHHHHHHH----EEEEEEEEESS-SSSS
T ss_pred             CEEEECCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCE
T ss_conf             58997099999707999987199998824468957779989999999999999999997475566774106789997047


Q ss_pred             HHHEEECC
Q ss_conf             31132013
Q T0522            91 LHVHVIAR   98 (134)
Q Consensus        91 lH~HiIPR   98 (134)
                      +|+|+|.-
T Consensus        95 LHlHvis~  102 (114)
T PF11969_consen   95 LHLHVISP  102 (114)
T ss_dssp             -EEEEEE-
T ss_pred             EEEEEECC
T ss_conf             89999426


No 3  
>PF04677 CwfJ_C_1:  Protein similar to CwfJ C-terminus 1;  InterPro: IPR006768   This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe protein CwfJ (Q09909 from SWISSPROT). CwfJ is part of the Cdc5p complex involved in mRNA splicing . This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.  
Probab=98.28  E-value=7.9e-07  Score=61.82  Aligned_cols=97  Identities=10%  Similarity=0.050  Sum_probs=78.5

Q ss_pred             CCCCCHHHHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             76316366528876641561479851077887448873345623122089989999999999999999985244663022
Q T0522             3 TFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG   82 (134)
Q Consensus         3 ~~~l~~~l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~   82 (134)
                      -|||+.---..-.+|.-+..|++-+-.-+-+|||+||+|-+|+.++..++++.+.++...-+.+.+...+ .+-+-+-++
T Consensus        14 ~fClsnp~~~khlIisiG~~~YlalpkgpL~~gH~lIvPi~H~~s~~~~d~~~~~Ei~~f~~~L~~mf~~-~~~~~vf~E   92 (121)
T PF04677_consen   14 WFCLSNPNVEKHLIISIGEHVYLALPKGPLFPGHCLIVPIQHVPSLTSLDEDVWEEIRNFKKSLVKMFAK-QGKDVVFFE   92 (121)
T ss_pred             CCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf             7744889836137999816189997699877998999824500650569989999999999999999998-699689999


Q ss_pred             HHCCHHHHHHHEEECCCC
Q ss_conf             320114423113201336
Q T0522            83 ALGNIVRQLHVHVIARRE  100 (134)
Q Consensus        83 ~~g~~vpHlH~HiIPR~~  100 (134)
                      .......|.|+++||=..
T Consensus        93 ~~~~~~~H~~iq~vPvp~  110 (121)
T PF04677_consen   93 TVSKRGPHTHIQCVPVPK  110 (121)
T ss_pred             EECCCCEEEEEEEEEECH
T ss_conf             836998068999998088


No 4  
>PF02744 GalP_UDP_tr_C:  Galactose-1-phosphate uridyl transferase, C-terminal domain;  InterPro: IPR005850    Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation.    This domain describes the C terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1guq_B 1gup_B 1hxp_A 1hxq_A.
Probab=97.34  E-value=0.00029  Score=45.27  Aligned_cols=67  Identities=9%  Similarity=0.119  Sum_probs=59.6

Q ss_pred             HHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             5288766415614798510778874488733456231220899899999999999999999852446
Q T0522            11 ERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAE   77 (134)
Q Consensus        11 ~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~   77 (134)
                      +....+|.+.+++.++.=--+.||..+++.||+|+.++.||+++|..+|...++.+.+.....|+..
T Consensus        26 ~~~~Riv~~n~~f~avvP~~a~WP~Ev~ilpkr~~~~l~~l~~~E~~~lA~~l~~i~~r~D~lf~t~   92 (166)
T PF02744_consen   26 AEGERIVYENDHFVAVVPFAARWPFEVWILPKRHVPDLVDLTDEERDDLAATLKPILRRYDNLFETS   92 (166)
T ss_dssp             H----EEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred             CCCCEEEEECCCEEEEEEEEEECCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             7798799978962899973581880899960877425867069999999999999999874258999


No 5  
>PF02611 CDH:  CDP-diacylglycerol pyrophosphatase;  InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol .; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2pof_A.
Probab=89.68  E-value=0.14  Score=28.13  Aligned_cols=85  Identities=20%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             HHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHC------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-
Q ss_conf             52887664156147985107788744887334562312208------99899999999999999999852446630223-
Q T0522            11 ERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFEL------TPLDQAMLTFETNLVAAGLKKATGAEKINIGA-   83 (134)
Q Consensus        11 ~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL------~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~-   83 (134)
                      -.+|..+-.-+  ...+.+|+.-|-+-|++|...++.|.+=      ++..+..=|..-..+++.+.+....+.+..++ 
T Consensus        50 p~pC~~Vd~~~--g~vv~KD~~G~~qyLlmPt~rIsGIEsP~Ll~~~~pny~~~AW~aR~~v~~~~g~~lpd~~isLaIN  127 (249)
T PF02611_consen   50 PAPCAEVDLDA--GYVVLKDRNGPLQYLLMPTDRISGIESPLLLEPRTPNYFAAAWQARHFVSDKLGKPLPDDDISLAIN  127 (249)
T ss_dssp             -TTSSEE-TT-----EEEE-------EEEE-SS-------GGGGSTTS--HHHHHHHTTHHHHHH------GGGEEEE-B
T ss_pred             CCCCCEECCCC--CEEEEECCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             99982687888--7699825899721688514444675483013789862899999873687875079898522478854


Q ss_pred             --HCCHHHHHHHEEEC
Q ss_conf             --20114423113201
Q T0522            84 --LGNIVRQLHVHVIA   97 (134)
Q Consensus        84 --~g~~vpHlH~HiIP   97 (134)
                        .|-+-.|+||||==
T Consensus       128 S~~gRSQdQLHIHI~C  143 (249)
T PF02611_consen  128 SRYGRSQDQLHIHIDC  143 (249)
T ss_dssp             --------S--EEEEE
T ss_pred             CCCCCCCCCEEEEHHH
T ss_conf             8878663413776223


No 6  
>PF01076 Mob_Pre:  Plasmid recombination enzyme;  InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilization) . ; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=83.08  E-value=1  Score=22.53  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=45.5

Q ss_pred             CHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH--CCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC-HHHH
Q ss_conf             12208998999999999999999998524466302232--01144231132013368765786221588888889-8899
Q T0522            47 EVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGAL--GNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWP-EEEH  123 (134)
Q Consensus        47 ~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~~--g~~vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~-~~e~  123 (134)
                      .+.++++++..+++   ....+.+.+.||-+.+-.+..  -...||+|+.+||...+....        .+...+ ..++
T Consensus        91 ~~~~~~~e~~~~~~---~~~~~~l~~r~G~~nv~~a~vH~DE~TPH~H~~~vPi~~~~rl~--------ak~~~~~~~~L  159 (196)
T PF01076_consen   91 FFNEMDPEEQKEFF---EDAYKWLQERFGKENVVSAVVHLDETTPHMHFDFVPIVEDGRLS--------AKRLFGGRKKL  159 (196)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCC--------CHHHHCHHHHH
T ss_conf             73001268999999---99999999877955278999988889874489998535677133--------14540669999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999998
Q T0522           124 RTFAARIME  132 (134)
Q Consensus       124 ~~l~~~ir~  132 (134)
                      .++.....+
T Consensus       160 ~~~Qd~~~~  168 (196)
T PF01076_consen  160 SQLQDDFAE  168 (196)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 7  
>PF00121 TIM:  Triosephosphate isomerase;  InterPro: IPR000652   Triosephosphate isomerase () (TIM)  is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 1b9b_B 2h6r_F 1hg3_F 1w0m_G 2jgq_B 1tmh_C 1tre_B 1aw2_H 1aw1_E 1ney_B ....
Probab=36.90  E-value=7.9  Score=16.76  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             6221588888889889999999999849
Q T0522           107 GPVWGFGKAEPWPEEEHRTFAARIMENL  134 (134)
Q Consensus       107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L  134 (134)
                      .|+|..++....++++.+++.+.||+.|
T Consensus       164 EPvWAIGtG~~as~e~~~~v~~~Ir~~l  191 (244)
T PF00121_consen  164 EPVWAIGTGKTASPEQAEEVHAFIRQIL  191 (244)
T ss_dssp             EEGGG------CCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             6620248999999799999999999999


No 8  
>PF03432 Relaxase:  Relaxase/Mobilisation nuclease domain ;  InterPro: IPR005094 Relaxases/mobilization proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification .
Probab=32.33  E-value=13  Score=15.39  Aligned_cols=59  Identities=17%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCC-EEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCHHHHHHHEEE-CCCCCC
Q ss_conf             887-448873345623122089989999999999999999985244663022-32011442311320-133687
Q T0522            32 RWP-WLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-ALGNIVRQLHVHVI-ARREGD  102 (134)
Q Consensus        32 ~~P-G~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-~~g~~vpHlH~HiI-PR~~~D  102 (134)
                      ..| +|+.+-....  +   ++++.+       ..++....+.+++++..+. +.-..-.|.|+||| +|..-+
T Consensus        54 ~~~~~h~i~Sf~~~--e---~~~e~~-------~~i~~~~~~~~~~~~~~~~~~~H~D~~h~H~Hivinrv~~~  115 (242)
T PF03432_consen   54 KRPVYHIILSFPPG--E---LSPEQA-------KEIAREFMEEMGPGNHQYVIVRHTDKDHPHIHIVINRVDLE  115 (242)
T ss_pred             CCEEEEEEEECCCC--C---CCHHHH-------HHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf             75689999828999--9---999999-------99999999971876772899998899964899999757476


No 9  
>PF07095 IgaA:  Intracellular growth attenuator protein IgaA;  InterPro: IPR010771   This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria .; GO: 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane
Probab=26.30  E-value=14  Score=15.21  Aligned_cols=66  Identities=21%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEECCCC---------CCCHHHCCHHHHHHHHHHHHHHHHHHHHH-HCCCCC--CHHHHCCHHHHHHHEEEC
Q ss_conf             778874488733456---------23122089989999999999999999985-244663--022320114423113201
Q T0522            30 DRRWPWLILVPQRAD---------IKEVFELTPLDQAMLTFETNLVAAGLKKA-TGAEKI--NIGALGNIVRQLHVHVIA   97 (134)
Q Consensus        30 ~~~~PG~~LV~pk~H---------v~~l~dL~~ee~~~l~~~~~~v~~~l~~~-~~~~~i--n~~~~g~~vpHlH~HiIP   97 (134)
                      |.--||=.|++..+.         ...++|.++   .+-|...++++..+..+ |+++||  |+..-.|..-|.-+|-.|
T Consensus       570 NSPpPGGfLI~SDEg~~LV~~p~Ps~~l~D~~~---~eqW~ElqRLs~mLl~TPF~aeGiIT~i~tDANGT~hI~LHs~p  646 (705)
T PF07095_consen  570 NSPPPGGFLIISDEGKQLVDHPVPSTSLFDYTA---LEQWRELQRLSGMLLNTPFKAEGIITNISTDANGTRHISLHSEP  646 (705)
T ss_pred             CCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCC
T ss_conf             799998269981688334219898865788985---78899999999998279853350577679857986999831675


Q ss_pred             C
Q ss_conf             3
Q T0522            98 R   98 (134)
Q Consensus        98 R   98 (134)
                      -
T Consensus       647 d  647 (705)
T PF07095_consen  647 D  647 (705)
T ss_pred             C
T ss_conf             5


No 10 
>PF04986 Transposase_32:  Putative transposase;  InterPro: IPR007069   Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 .   More information about these proteins can be found at Protein of the Month: Transposase .; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=26.14  E-value=16  Score=14.70  Aligned_cols=16  Identities=6%  Similarity=-0.027  Sum_probs=6.1

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             8998999999999999
Q T0522            51 LTPLDQAMLTFETNLV   66 (134)
Q Consensus        51 L~~ee~~~l~~~~~~v   66 (134)
                      |+..-+..+...++..
T Consensus        48 l~~~fr~~~l~~L~~~   63 (183)
T PF04986_consen   48 LSKVFRGKFLARLRKA   63 (183)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             5699999999999987


Done!