Query T0522 NP_384335.1, SINORHIZOBIUM MELILOTI 1021, 134 residues
Match_columns 134
No_of_seqs 115 out of 1096
Neff 6.9
Searched_HMMs 11830
Date Fri May 21 18:06:21 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0522.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0522.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01230 HIT: HIT domain; Int 99.8 1.7E-21 1.4E-25 156.3 6.6 91 10-100 2-97 (98)
2 PF11969 DcpS_C: Scavenger mRN 98.5 8.6E-08 7.3E-12 68.0 5.2 84 15-98 15-102 (114)
3 PF04677 CwfJ_C_1: Protein sim 98.3 7.9E-07 6.7E-11 61.8 6.8 97 3-100 14-110 (121)
4 PF02744 GalP_UDP_tr_C: Galact 97.3 0.00029 2.5E-08 45.3 7.1 67 11-77 26-92 (166)
5 PF02611 CDH: CDP-diacylglycer 89.7 0.14 1.1E-05 28.1 3.7 85 11-97 50-143 (249)
6 PF01076 Mob_Pre: Plasmid reco 83.1 1 8.5E-05 22.5 5.2 75 47-132 91-168 (196)
7 PF00121 TIM: Triosephosphate 36.9 7.9 0.00067 16.8 2.2 28 107-134 164-191 (244)
8 PF03432 Relaxase: Relaxase/Mo 32.3 13 0.0011 15.4 3.4 59 32-102 54-115 (242)
9 PF07095 IgaA: Intracellular g 26.3 14 0.0012 15.2 2.0 66 30-98 570-647 (705)
10 PF04986 Transposase_32: Putat 26.1 16 0.0014 14.7 3.2 16 51-66 48-63 (183)
No 1
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-phi-His-phi-His-phi-phi (phi, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms . Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologs, which are found in all forms of life, are structurally related to Fhit homologs and GalT-related enzymes, which have more restricted phylogenetic profiles . Hint homologs including rabbit Hint and yeast Hnt1 hydrolyze adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo . Fhit homologs are diadenosine polyphosphate hydrolases and function as tumor suppressors in human and mouse though the tumor suppressing function of Fhit does not depend on ApppA hydrolysis . The third branch of the HIT superfamily, which includes GalT homologs, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moeities to phosphorylated second substrates rather than hydrolyzing them . ; PDB: 6rhn_A 3rhn_A 1rzy_A 4rhn_A 5rhn_A 1kpe_B 1av5_B 1kpa_B 1kpf_A 1kpc_B ....
Probab=99.83 E-value=1.7e-21 Score=156.34 Aligned_cols=91 Identities=30% Similarity=0.301 Sum_probs=86.5
Q ss_pred HHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----H
Q ss_conf 65288766415614798510778874488733456231220899899999999999999999852446630223-----2
Q T0522 10 LERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGA-----L 84 (134)
Q Consensus 10 l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~-----~ 84 (134)
.+.++.+|.+.+.|.++|+.+|.+|||+||+||+|+++++||+++++.+++..++++++++++.++++++|+.. +
T Consensus 2 ~e~~~~iv~e~~~~~a~l~~~p~~pgh~LVipk~h~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ng~~~ 81 (98)
T PF01230_consen 2 GEIPSRIVYEDDHVVAFLDINPISPGHVLVIPKRHVSSLFDLTPEERAELMDLVQKVAKALKKVFGPDGYNIGINNGPAA 81 (98)
T ss_dssp TSSGGGEEEE-SSEEEEE-SSTSSSS-EEEEESS--SSGGGS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEEEE-
T ss_pred CCCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHH
T ss_conf 98882399989979999848899984999961503297333999999999999999999975445610202201351321
Q ss_pred CCHHHHHHHEEECCCC
Q ss_conf 0114423113201336
Q T0522 85 GNIVRQLHVHVIARRE 100 (134)
Q Consensus 85 g~~vpHlH~HiIPR~~ 100 (134)
||.+||+|+||||||+
T Consensus 82 gq~v~HlH~HiIPR~~ 97 (98)
T PF01230_consen 82 GQSVPHLHFHIIPRYK 97 (98)
T ss_dssp ---SSS-EEEEEEE-T
T ss_pred CCCCCEEEEEEECCCC
T ss_conf 6851579999815637
No 2
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1vlr_A 1xmm_C 3bla_A 3bl7_B 1st0_B 3bl9_B 1xml_A 1st4_B 1xqu_A.
Probab=98.46 E-value=8.6e-08 Score=68.03 Aligned_cols=84 Identities=19% Similarity=0.140 Sum_probs=69.4
Q ss_pred EEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHH-HCCHHHH
Q ss_conf 7664156147985107788744887334562312208998999999999999999998524---46630223-2011442
Q T0522 15 IPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATG---AEKINIGA-LGNIVRQ 90 (134)
Q Consensus 15 ~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~---~~~in~~~-~g~~vpH 90 (134)
-++-+.+.+.++-+..|..|.|+||+||+|++++.||+++...-+..+.....+.+++.+. ...+|++. .++++.|
T Consensus 15 ~ilyed~~~v~~~D~~p~a~~H~Lvipk~~i~sl~~L~~~~~~lL~~m~~~~~~~i~~~~~~~~~~~~~~gfH~~ps~~H 94 (114)
T PF11969_consen 15 RILYEDDDFVAFKDIYPKAPVHLLVIPKRHIPSLRDLTPEHLPLLEHMREVARKIIEEQYPELFRDDFRIGFHYPPSVYH 94 (114)
T ss_dssp GESEE-SSEEEEE-TT-SCCSEEEEEESS--SSGGG--GGGHHHHHHHHHHHHHHHHHHH----EEEEEEEEESS-SSSS
T ss_pred CEEEECCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCE
T ss_conf 58997099999707999987199998824468957779989999999999999999997475566774106789997047
Q ss_pred HHHEEECC
Q ss_conf 31132013
Q T0522 91 LHVHVIAR 98 (134)
Q Consensus 91 lH~HiIPR 98 (134)
+|+|+|.-
T Consensus 95 LHlHvis~ 102 (114)
T PF11969_consen 95 LHLHVISP 102 (114)
T ss_dssp -EEEEEE-
T ss_pred EEEEEECC
T ss_conf 89999426
No 3
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe protein CwfJ (Q09909 from SWISSPROT). CwfJ is part of the Cdc5p complex involved in mRNA splicing . This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.28 E-value=7.9e-07 Score=61.82 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=78.5
Q ss_pred CCCCCHHHHHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 76316366528876641561479851077887448873345623122089989999999999999999985244663022
Q T0522 3 TFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG 82 (134)
Q Consensus 3 ~~~l~~~l~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~ 82 (134)
-|||+.---..-.+|.-+..|++-+-.-+-+|||+||+|-+|+.++..++++.+.++...-+.+.+...+ .+-+-+-++
T Consensus 14 ~fClsnp~~~khlIisiG~~~YlalpkgpL~~gH~lIvPi~H~~s~~~~d~~~~~Ei~~f~~~L~~mf~~-~~~~~vf~E 92 (121)
T PF04677_consen 14 WFCLSNPNVEKHLIISIGEHVYLALPKGPLFPGHCLIVPIQHVPSLTSLDEDVWEEIRNFKKSLVKMFAK-QGKDVVFFE 92 (121)
T ss_pred CCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 7744889836137999816189997699877998999824500650569989999999999999999998-699689999
Q ss_pred HHCCHHHHHHHEEECCCC
Q ss_conf 320114423113201336
Q T0522 83 ALGNIVRQLHVHVIARRE 100 (134)
Q Consensus 83 ~~g~~vpHlH~HiIPR~~ 100 (134)
.......|.|+++||=..
T Consensus 93 ~~~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 93 TVSKRGPHTHIQCVPVPK 110 (121)
T ss_pred EECCCCEEEEEEEEEECH
T ss_conf 836998068999998088
No 4
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1guq_B 1gup_B 1hxp_A 1hxq_A.
Probab=97.34 E-value=0.00029 Score=45.27 Aligned_cols=67 Identities=9% Similarity=0.119 Sum_probs=59.6
Q ss_pred HHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5288766415614798510778874488733456231220899899999999999999999852446
Q T0522 11 ERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAE 77 (134)
Q Consensus 11 ~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~ 77 (134)
+....+|.+.+++.++.=--+.||..+++.||+|+.++.||+++|..+|...++.+.+.....|+..
T Consensus 26 ~~~~Riv~~n~~f~avvP~~a~WP~Ev~ilpkr~~~~l~~l~~~E~~~lA~~l~~i~~r~D~lf~t~ 92 (166)
T PF02744_consen 26 AEGERIVYENDHFVAVVPFAARWPFEVWILPKRHVPDLVDLTDEERDDLAATLKPILRRYDNLFETS 92 (166)
T ss_dssp H----EEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred CCCCEEEEECCCEEEEEEEEEECCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7798799978962899973581880899960877425867069999999999999999874258999
No 5
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol .; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2pof_A.
Probab=89.68 E-value=0.14 Score=28.13 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHCCEEEEECCEEEEEEEECCCCCEEEEEECCCCCCCHHHC------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-
Q ss_conf 52887664156147985107788744887334562312208------99899999999999999999852446630223-
Q T0522 11 ERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFEL------TPLDQAMLTFETNLVAAGLKKATGAEKINIGA- 83 (134)
Q Consensus 11 ~~d~~~i~~~~~~~v~L~~~~~~PG~~LV~pk~Hv~~l~dL------~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~- 83 (134)
-.+|..+-.-+ ...+.+|+.-|-+-|++|...++.|.+= ++..+..=|..-..+++.+.+....+.+..++
T Consensus 50 p~pC~~Vd~~~--g~vv~KD~~G~~qyLlmPt~rIsGIEsP~Ll~~~~pny~~~AW~aR~~v~~~~g~~lpd~~isLaIN 127 (249)
T PF02611_consen 50 PAPCAEVDLDA--GYVVLKDRNGPLQYLLMPTDRISGIESPLLLEPRTPNYFAAAWQARHFVSDKLGKPLPDDDISLAIN 127 (249)
T ss_dssp -TTSSEE-TT-----EEEE-------EEEE-SS-------GGGGSTTS--HHHHHHHTTHHHHHH------GGGEEEE-B
T ss_pred CCCCCEECCCC--CEEEEECCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 99982687888--7699825899721688514444675483013789862899999873687875079898522478854
Q ss_pred --HCCHHHHHHHEEEC
Q ss_conf --20114423113201
Q T0522 84 --LGNIVRQLHVHVIA 97 (134)
Q Consensus 84 --~g~~vpHlH~HiIP 97 (134)
.|-+-.|+||||==
T Consensus 128 S~~gRSQdQLHIHI~C 143 (249)
T PF02611_consen 128 SRYGRSQDQLHIHIDC 143 (249)
T ss_dssp --------S--EEEEE
T ss_pred CCCCCCCCCEEEEHHH
T ss_conf 8878663413776223
No 6
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilization) . ; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=83.08 E-value=1 Score=22.53 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=45.5
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH--CCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC-HHHH
Q ss_conf 12208998999999999999999998524466302232--01144231132013368765786221588888889-8899
Q T0522 47 EVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGAL--GNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWP-EEEH 123 (134)
Q Consensus 47 ~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~~~--g~~vpHlH~HiIPR~~~D~~~p~~v~~~~~~~~~~-~~e~ 123 (134)
.+.++++++..+++ ....+.+.+.||-+.+-.+.. -...||+|+.+||...+.... .+...+ ..++
T Consensus 91 ~~~~~~~e~~~~~~---~~~~~~l~~r~G~~nv~~a~vH~DE~TPH~H~~~vPi~~~~rl~--------ak~~~~~~~~L 159 (196)
T PF01076_consen 91 FFNEMDPEEQKEFF---EDAYKWLQERFGKENVVSAVVHLDETTPHMHFDFVPIVEDGRLS--------AKRLFGGRKKL 159 (196)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCC--------CHHHHCHHHHH
T ss_conf 73001268999999---99999999877955278999988889874489998535677133--------14540669999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q T0522 124 RTFAARIME 132 (134)
Q Consensus 124 ~~l~~~ir~ 132 (134)
.++.....+
T Consensus 160 ~~~Qd~~~~ 168 (196)
T PF01076_consen 160 SQLQDDFAE 168 (196)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 7
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 1b9b_B 2h6r_F 1hg3_F 1w0m_G 2jgq_B 1tmh_C 1tre_B 1aw2_H 1aw1_E 1ney_B ....
Probab=36.90 E-value=7.9 Score=16.76 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6221588888889889999999999849
Q T0522 107 GPVWGFGKAEPWPEEEHRTFAARIMENL 134 (134)
Q Consensus 107 ~~v~~~~~~~~~~~~e~~~l~~~ir~~L 134 (134)
.|+|..++....++++.+++.+.||+.|
T Consensus 164 EPvWAIGtG~~as~e~~~~v~~~Ir~~l 191 (244)
T PF00121_consen 164 EPVWAIGTGKTASPEQAEEVHAFIRQIL 191 (244)
T ss_dssp EEGGG------CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6620248999999799999999999999
No 8
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilization proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification .
Probab=32.33 E-value=13 Score=15.39 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCC-EEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCHHHHHHHEEE-CCCCCC
Q ss_conf 887-448873345623122089989999999999999999985244663022-32011442311320-133687
Q T0522 32 RWP-WLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-ALGNIVRQLHVHVI-ARREGD 102 (134)
Q Consensus 32 ~~P-G~~LV~pk~Hv~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~in~~-~~g~~vpHlH~HiI-PR~~~D 102 (134)
..| +|+.+-.... + ++++.+ ..++....+.+++++..+. +.-..-.|.|+||| +|..-+
T Consensus 54 ~~~~~h~i~Sf~~~--e---~~~e~~-------~~i~~~~~~~~~~~~~~~~~~~H~D~~h~H~Hivinrv~~~ 115 (242)
T PF03432_consen 54 KRPVYHIILSFPPG--E---LSPEQA-------KEIAREFMEEMGPGNHQYVIVRHTDKDHPHIHIVINRVDLE 115 (242)
T ss_pred CCEEEEEEEECCCC--C---CCHHHH-------HHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 75689999828999--9---999999-------99999999971876772899998899964899999757476
No 9
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria .; GO: 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane
Probab=26.30 E-value=14 Score=15.21 Aligned_cols=66 Identities=21% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCCCCEEEEEECCCC---------CCCHHHCCHHHHHHHHHHHHHHHHHHHHH-HCCCCC--CHHHHCCHHHHHHHEEEC
Q ss_conf 778874488733456---------23122089989999999999999999985-244663--022320114423113201
Q T0522 30 DRRWPWLILVPQRAD---------IKEVFELTPLDQAMLTFETNLVAAGLKKA-TGAEKI--NIGALGNIVRQLHVHVIA 97 (134)
Q Consensus 30 ~~~~PG~~LV~pk~H---------v~~l~dL~~ee~~~l~~~~~~v~~~l~~~-~~~~~i--n~~~~g~~vpHlH~HiIP 97 (134)
|.--||=.|++..+. ...++|.++ .+-|...++++..+..+ |+++|| |+..-.|..-|.-+|-.|
T Consensus 570 NSPpPGGfLI~SDEg~~LV~~p~Ps~~l~D~~~---~eqW~ElqRLs~mLl~TPF~aeGiIT~i~tDANGT~hI~LHs~p 646 (705)
T PF07095_consen 570 NSPPPGGFLIISDEGKQLVDHPVPSTSLFDYTA---LEQWRELQRLSGMLLNTPFKAEGIITNISTDANGTRHISLHSEP 646 (705)
T ss_pred CCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCC
T ss_conf 799998269981688334219898865788985---78899999999998279853350577679857986999831675
Q ss_pred C
Q ss_conf 3
Q T0522 98 R 98 (134)
Q Consensus 98 R 98 (134)
-
T Consensus 647 d 647 (705)
T PF07095_consen 647 D 647 (705)
T ss_pred C
T ss_conf 5
No 10
>PF04986 Transposase_32: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 . More information about these proteins can be found at Protein of the Month: Transposase .; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=26.14 E-value=16 Score=14.70 Aligned_cols=16 Identities=6% Similarity=-0.027 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8998999999999999
Q T0522 51 LTPLDQAMLTFETNLV 66 (134)
Q Consensus 51 L~~ee~~~l~~~~~~v 66 (134)
|+..-+..+...++..
T Consensus 48 l~~~fr~~~l~~L~~~ 63 (183)
T PF04986_consen 48 LSKVFRGKFLARLRKA 63 (183)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 5699999999999987
Done!