Query T0523 3MQO, Burkholderia thailandensis, 120 residues
Match_columns 120
No_of_seqs 112 out of 16486
Neff 10.1
Searched_HMMs 22458
Date Fri May 21 18:03:58 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0523.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0523.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0u_A NPH1-1, LOV2; kinase, t 99.9 2.2E-24 9.8E-29 148.6 4.3 114 5-119 4-122 (146)
2 2wkq_A NPH1-1, RAS-related C3 99.9 3E-24 1.3E-28 147.9 4.9 115 4-119 12-131 (332)
3 2gj3_A Nitrogen fixation regul 99.9 2E-23 8.8E-28 143.5 9.0 112 4-116 6-119 (120)
4 2z6d_A Phototropin-2; PAS-fold 99.9 1.9E-23 8.5E-28 143.6 7.3 117 2-119 5-126 (130)
5 3lyx_A Sensory BOX/ggdef domai 99.9 7.2E-23 3.2E-27 140.5 6.7 114 4-118 8-123 (124)
6 2pr5_A Blue-light photorecepto 99.9 1.5E-22 6.6E-27 138.9 6.0 112 6-119 2-117 (132)
7 1v9y_A Heme PAS sensor protein 99.8 4.5E-21 2E-25 131.0 8.1 115 3-119 40-159 (167)
8 3mjq_A Uncharacterized protein 99.8 1.3E-21 5.7E-26 133.9 3.9 113 5-120 1-114 (126)
9 3f1p_B ARYL hydrocarbon recept 99.8 5.7E-21 2.5E-25 130.4 6.0 114 4-118 2-120 (121)
10 3bwl_A Sensor protein; structu 99.8 6.4E-20 2.9E-24 124.9 8.6 109 3-114 17-126 (126)
11 1n9l_A PHOT-LOV1, putative blu 99.8 1.2E-19 5.2E-24 123.5 6.5 102 13-115 3-109 (109)
12 1byw_A Protein (human ERG pota 99.8 1.5E-19 6.9E-24 122.8 6.3 97 20-116 12-110 (110)
13 2vlg_A Sporulation kinase A; h 99.8 1.5E-19 6.9E-24 122.8 4.5 108 6-117 2-111 (111)
14 2r78_A Sensor protein; sensory 99.8 5.8E-19 2.6E-23 119.8 7.1 107 2-114 10-117 (117)
15 1d06_A Nitrogen fixation regul 99.8 6.8E-19 3E-23 119.4 6.2 111 2-114 15-130 (130)
16 3luq_A Sensor protein; PAS, hi 99.7 3.2E-18 1.4E-22 115.8 8.1 111 2-114 2-114 (114)
17 2vv6_A FIXL, sensor protein FI 99.7 1.3E-18 5.7E-23 117.9 5.6 107 11-119 1-112 (119)
18 3mfx_A Sensory BOX/ggdef famil 99.7 7.2E-18 3.2E-22 114.0 9.4 112 3-116 7-125 (129)
19 3f1p_A Endothelial PAS domain- 99.7 2.8E-18 1.3E-22 116.1 5.0 103 15-118 11-116 (117)
20 3eeh_A Putative light and redo 99.7 1.9E-17 8.3E-22 111.8 6.8 111 2-114 10-125 (125)
21 3ewk_A Sensor protein; PAS dom 99.7 4E-17 1.8E-21 110.0 8.0 109 3-112 111-227 (227)
22 2qkp_A Uncharacterized protein 99.7 4.4E-17 2E-21 109.8 6.9 113 4-119 20-136 (151)
23 3h9w_A Diguanylate cyclase wit 99.7 9.2E-17 4.1E-21 108.1 6.1 106 13-118 3-111 (115)
24 3icy_A Sensor protein; sensory 99.7 1.1E-16 4.7E-21 107.7 6.3 112 2-114 3-118 (118)
25 3fg8_A Uncharacterized protein 99.7 1.6E-17 7.1E-22 112.1 2.1 106 3-116 12-118 (118)
26 3d72_A Vivid PAS protein VVD; 99.6 1.4E-16 6.3E-21 107.1 6.2 97 13-109 35-146 (149)
27 3fc7_A HTR-like protein, senso 99.6 1.2E-16 5.3E-21 107.5 3.6 107 2-114 18-125 (125)
28 3b33_A Sensor protein; structu 99.6 4.8E-16 2.1E-20 104.3 6.4 107 4-114 8-115 (115)
29 3cax_A Uncharacterized protein 99.6 1.2E-15 5.5E-20 102.1 7.5 109 4-119 240-350 (369)
30 3ewk_A Sensor protein; PAS dom 99.6 1.3E-15 5.6E-20 102.0 6.9 103 16-119 2-106 (227)
31 1ll8_A PAS kinase; PAS domain, 99.6 4.2E-15 1.9E-19 99.3 6.9 106 8-115 3-114 (114)
32 1nwz_A PYP, photoactive yellow 99.5 7.4E-15 3.3E-19 98.0 7.0 106 5-113 19-125 (125)
33 1wa9_A Period circadian protei 99.5 3E-15 1.3E-19 100.0 3.9 117 2-119 147-270 (368)
34 3gdi_A Period circadian protei 99.5 1.4E-15 6.3E-20 101.8 2.1 116 3-119 155-274 (309)
35 1mzu_A PPR; photoactive yellow 99.5 2.6E-14 1.1E-18 95.1 5.2 99 2-101 21-121 (129)
36 3a0r_A Sensor protein; four he 99.4 2.9E-14 1.3E-18 94.8 2.9 107 5-119 10-119 (349)
37 1wa9_A Period circadian protei 99.4 1.7E-13 7.5E-18 90.7 3.7 102 17-119 12-139 (368)
38 3gdi_A Period circadian protei 99.4 3.1E-13 1.4E-17 89.3 4.4 113 6-119 18-138 (309)
39 2jhe_A Transcription regulator 99.3 2.3E-13 1E-17 90.1 0.3 105 3-116 80-188 (190)
40 3a0s_A Sensor protein; PAS-fol 99.2 7.8E-12 3.5E-16 81.9 5.6 93 12-112 1-96 (96)
41 1oj5_A Steroid receptor coacti 99.2 3.6E-12 1.6E-16 83.6 2.6 99 19-117 14-116 (132)
42 2w0n_A Sensor protein DCUS; si 99.2 7.4E-12 3.3E-16 82.0 3.7 102 4-114 16-118 (118)
43 3clo_A Transcriptional regulat 98.5 4.3E-08 1.9E-12 62.0 4.2 115 4-118 34-168 (258)
44 2vea_A Phytochrome-like protei 98.1 3.9E-06 1.7E-10 51.6 6.4 43 13-55 28-73 (520)
45 2ool_A Sensor protein; bacteri 97.4 0.0001 4.5E-09 44.1 3.9 97 13-117 41-140 (337)
46 2o9c_A Bacteriophytochrome; ph 96.7 0.00059 2.6E-08 40.0 2.4 75 16-94 57-132 (342)
47 2p08_A Signal transduction his 68.3 5.8 0.00026 18.8 4.5 45 5-52 4-48 (115)
48 3g6o_A Bacteriophytochrome; al 26.4 26 0.0011 15.3 1.9 36 13-48 25-62 (505)
No 1
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal transduction, phototropin1; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.89 E-value=2.2e-24 Score=148.59 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=99.2
Q ss_pred HHHHHHHCCCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899871897489965----986876036888642013331110012234433332222222222222222222222222
Q T0523 5 YKTAFHLAPIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
++++|+++|.|+++++ ||+|+|||++|++|+||++++++|+++..++.+ +........+...+..++.|++|+.+
T Consensus 4 l~~~~e~~~~~~vi~d~~~~dg~I~~vN~a~~~~~Gy~~~el~G~~~~~l~~~-~~~~~~~~~l~~~l~~~~~~~~e~~~ 82 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGP-ETDRATVRKIRDAIDNQTEVTVQLIN 82 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCT-TSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHHCCCHHHHCCC-CCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999818980999958899897999967999988969999817742202033-45499999999999819975279987
Q ss_pred CCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 22211013433245676-3799888999988840147331
Q T0523 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
++|||+.+|+.+++.|+ +.+|...+++++++|||++|++
T Consensus 83 ~~kdG~~~~v~~~~~p~~d~~g~~~~~v~v~~DITe~k~~ 122 (146)
T 2v0u_A 83 YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred EECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHH
T ss_conf 8438846999999999997998999999999988899999
No 2
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=3e-24 Score=147.87 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=99.0
Q ss_pred HHHHHHHHCCCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965----98687603688864201333111001223443333222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
.|.++||+++.|+++.| ||+|++||++|++|+||+++|++|+++..+++ ++........+...+..++.+++|+.
T Consensus 12 ~l~~~~e~~~~~~vi~D~~~~dg~Ii~vN~a~~~l~Gy~~~EliG~~~~~l~~-~~~~~~~~~~i~~~l~~~~~~~~e~~ 90 (332)
T 2wkq_A 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQG-PETDRATVRKIRDAIDNQTEVTVQLI 90 (332)
T ss_dssp --CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC-TTCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCC-CCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999970897599984899989499883899998883999985998777179-88899999999999984983999999
Q ss_pred CCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 222211013433245676-3799888999988840147331
Q T0523 80 MKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 80 ~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
+++|||+.+|+.++++|+ +.+|.+.+++++++|||+|||+
T Consensus 91 ~~~kdG~~~~v~~~~~pi~d~~G~i~~~v~~~~DITe~k~~ 131 (332)
T 2wkq_A 91 NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD 131 (332)
T ss_dssp EECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHH
T ss_conf 99789999999999996188999999999999957147898
No 3
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.89 E-value=2e-23 Score=143.53 Aligned_cols=112 Identities=12% Similarity=0.162 Sum_probs=98.7
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965-98687603688864201333111001223443333222222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKR 82 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (120)
.|++++|++|++|++.+ +|+|++||++|++++||++++++|+++..+.++. ......+.+...+..++.|++|++.++
T Consensus 6 ~~~~~~e~s~~~i~i~d~~g~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~e~~~~~ 84 (120)
T 2gj3_A 6 IFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGT-TPRLVYQALWGRLAQKKPWSGVLVNRR 84 (120)
T ss_dssp HHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTT-SCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred HHHHHHHCCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCEECC-CCHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 9999997124152999699999999689999879695661675400011013-536789998763306973061255586
Q ss_pred CCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHH
Q ss_conf 211013433245676-3799888999988840147
Q T0523 83 AGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITer 116 (120)
|||+.+|+.++++|+ +.+|.+.+++++++||||.
T Consensus 85 kdG~~~~~~~~~~~i~d~~g~~~~~i~~~~DITel 119 (120)
T 2gj3_A 85 KDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 119 (120)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSC
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 99989999999999999998999999999956677
No 4
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.89 E-value=1.9e-23 Score=143.62 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=101.3
Q ss_pred CHHHHHHHHHCCCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4268899871897489965----986876036888642013331110012234433332222222222222222222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADD 77 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 77 (120)
+-+|+.++++++.++++.+ ||+|+|||++|++|+||++++++|+++..++++. ......+.+...+..++.+++|
T Consensus 5 ~~~l~~~~~~~~~~~~i~D~~~~d~~I~~vN~a~~~~~G~~~~elig~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~e 83 (130)
T 2z6d_A 5 SQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPD-TDKNEVAKIRDCVKNGKSYCGR 83 (130)
T ss_dssp --CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT-SCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCCC-CCHHHHHHHHHHHHHHCCCEEE
T ss_conf 899999998389969999898997989999879999889298997598667653877-8889999999998630452069
Q ss_pred CCCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 22222211013433245676-3799888999988840147331
Q T0523 78 RIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 78 ~~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
+.++++||+.+|+.++++|+ +.+|.+.+++++++|||++|++
T Consensus 84 ~~~~~~dG~~~w~~~~~~pi~d~~g~~~~~i~~~~DITe~ke~ 126 (130)
T 2z6d_A 84 LLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEG 126 (130)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC--
T ss_pred EEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHH
T ss_conf 9999628866999999999999999999999999988388899
No 5
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.87 E-value=7.2e-23 Score=140.54 Aligned_cols=114 Identities=15% Similarity=0.282 Sum_probs=100.4
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965-98687603688864201333111001223443333222222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKR 82 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (120)
.+..+|+++|+||++.+ +|+|+++|++|++++||++++++|+++..++++.+. ......+...+..++.++.|..+.+
T Consensus 8 ~~~~~fd~~~d~i~~~d~~g~i~~~N~~~~~~~g~~~~e~lg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~ 86 (124)
T 3lyx_A 8 QRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDT-EHITSEVISAVENQGKWTGEIRMLH 86 (124)
T ss_dssp HHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTH-HHHHHHHHHHHHHTSCEEEEEEEEC
T ss_pred HHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHEEECHHHH-HHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 999999647115089979997998919999998829999929974225561454-5677888988750685202665523
Q ss_pred CCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHH
Q ss_conf 211013433245676-379988899998884014733
Q T0523 83 AGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRR 118 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkr 118 (120)
+||+.+|+.++++|+ +.+|.+.+++++++|||||||
T Consensus 87 ~~g~~~~~~~~~~pi~d~~g~~~~~i~i~~DITerK~ 123 (124)
T 3lyx_A 87 KDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp TTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 6996889999987899899999999999999937735
No 6
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, signaling protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.86 E-value=1.5e-22 Score=138.87 Aligned_cols=112 Identities=12% Similarity=0.178 Sum_probs=94.8
Q ss_pred HHHHHHCCCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899871897489965----9868760368886420133311100122344333322222222222222222222222222
Q T0523 6 KTAFHLAPIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
Q Consensus 6 ~~i~e~~p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
..||+++|.||++.+ ||+|++||++|++|+||++++++|+++..++++.. .......+...+..++.+++|+.++
T Consensus 2 ~~l~d~~~~~i~v~d~~~~dg~I~~~N~a~~~~~G~s~~el~g~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~e~~~~ 80 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHT-DPAEVDNIRTALQNKEPVTVQIQNY 80 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTC-CHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CHHHHCCCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 068857884199998988979899996899999891999980541000444101-4999999999985288403565547
Q ss_pred CCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 22110134332456763799888999988840147331
Q T0523 82 RAGGELFWCHVTGRALDRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DITerkra 119 (120)
++||+.+|+.++++|+..++ ..+++++++|||++|++
T Consensus 81 ~~dG~~~~~~~~~~~i~~~~-~~~~i~~~~DITe~k~~ 117 (132)
T 2pr5_A 81 KKDGTMFWNELNIDPMEIED-KTYFVGIQNDITKQKEY 117 (132)
T ss_dssp CTTSCEEEEEEEEEEEEETT-EEEEEEEEEECHHHHHH
T ss_pred CCCCCEEEEEEEEEEEECCC-CCEEEEEEEECCHHHHH
T ss_conf 47997999998888899099-12998899976599999
No 7
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli K12} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.84 E-value=4.5e-21 Score=130.99 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=89.1
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf 268899871897489965-986876036888642013331110012234433332222222222222222----222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAH----GSYADD 77 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e 77 (120)
..|+.++|++|+||++.+ +|+|+++|++++++|||++++++|+++..++++... ......+......+ .....|
T Consensus 40 ~~~~~~le~s~dgi~i~d~~g~Ii~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e 118 (167)
T 1v9y_A 40 GIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLR-PAHPEYIRHNREGGKARVEGMSRE 118 (167)
T ss_dssp CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGT-TTHHHHHHHHHC----------CE
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9999999738762999959898999977999986578888246774333222233-200124677766411334543169
Q ss_pred CCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 222222110134332456763799888999988840147331
Q T0523 78 RIMKRAGGELFWCHVTGRALDRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 78 ~~~~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DITerkra 119 (120)
+.+++|||+.+|+.++++|+..+++ .+++++++|||++|++
T Consensus 119 ~~~~~kdG~~~~v~isi~~i~~~~~-~~~v~i~~DITe~k~~ 159 (167)
T 1v9y_A 119 LQLEKKDGSKIWTRFALSKVSAEGK-VYYLALVRDASVEMAQ 159 (167)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTE-EEEEEEEEC-------
T ss_pred EEEEEEECCCCCEEEEEEEEEECCE-EEEEEEEEECHHHHHH
T ss_conf 9999840235320799999996998-9999999998799999
No 8
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.83 E-value=1.3e-21 Score=133.89 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=94.5
Q ss_pred HHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899871897489965-986876036888642013331110012234433332222222222222222222222222222
Q T0523 5 YKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRA 83 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (120)
||++||++|++|++.+ +|+|+++|+++++++|+++++++|+++.+++++.. .. ...........+..+..+..++++
T Consensus 1 l~~ile~~~d~i~i~d~~g~i~~~N~a~~~~~g~~~~e~lg~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~e~~~~~~ 78 (126)
T 3mjq_A 1 MKNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGK-MA-EGEKILAELFAGKKESLPLSLEKK 78 (126)
T ss_dssp -CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTC-HH-HHHHHHHHHHHTCCSEEEEEEECT
T ss_pred CHHHHHCCCCCEEEECCCCCEEEEEHHHHHCCCCCHHHHCCCEEEEEECCCC-CC-CCHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9689850922459992999599990253302799868801310235402433-32-201345554225761489999957
Q ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHCC
Q ss_conf 1101343324567637998889999888401473319
Q T0523 84 GGELFWCHVTGRALDRTAPLAAGVWTFEDLSATRRVA 120 (120)
Q Consensus 84 dG~~~~v~~~~~~i~~~~~~~~~v~~~~DITerkra~ 120 (120)
||+.+|+.+++.|+..++. .+++++++|||+||||.
T Consensus 79 ~G~~~~v~~~~~~i~~~~~-~~~~~i~~DITerK~Ae 114 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKWHNE-PCLFAIIKDLSKEERAS 114 (126)
T ss_dssp TSCEEEEEEEEEEEESSSS-EEEEEEEEECC------
T ss_pred CCCEEEEEEEEEEEEECCE-EEEEEEEEECCHHHHHH
T ss_conf 9989999999999998996-69999999888999986
No 9
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B
Probab=99.82 E-value=5.7e-21 Score=130.44 Aligned_cols=114 Identities=9% Similarity=0.163 Sum_probs=94.1
Q ss_pred HHHHHHHHCCCCEE-E-ECCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 68899871897489-9-65986876036888642013331110012234433332222222222222222-222222222
Q T0523 4 DYKTAFHLAPIGLV-L-SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAH-GSYADDRIM 80 (120)
Q Consensus 4 ~~~~i~e~~p~gi~-~-~~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~ 80 (120)
+||+|++.+|+..+ . +.+|+++|+|+++++++||++++++|+++.+++++++ .......+...+..+ .....+.++
T Consensus 2 ~f~~l~~~~p~~fi~r~d~dG~i~~vn~~~~~i~Gy~~~el~g~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (121)
T 3f1p_B 2 EFKGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPED-QQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ------CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTT-HHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCH-HHEEEEEECCCCCCCCCEEEEEEEE
T ss_conf 431122059950999998999999999899988796999986534566400000-1022221000101234304589974
Q ss_pred CCCCCCEEEEEEEEEEE-CC-CCCEEEEEEEEEEHHHHHH
Q ss_conf 22211013433245676-37-9988899998884014733
Q T0523 81 KRAGGELFWCHVTGRAL-DR-TAPLAAGVWTFEDLSATRR 118 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i-~~-~~~~~~~v~~~~DITerkr 118 (120)
++|||+.+|++.+++++ +. +|.+.+++++.+|||+|||
T Consensus 81 ~~kdG~~~w~~~~~~~i~d~~~g~~~~ii~v~~DIt~rkq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred ECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf 7699959999999999993899969999999999953026
No 10
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protein, PSI-2, protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.81 E-value=6.4e-20 Score=124.85 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=90.9
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268899871897489965-9868760368886420133311100122344333322222222222222222222222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
..|+.||+++|.||++.+ +|+|+++|+++++++||++++++|+++.++.++.+ ...+.. ....+..++...+|..++
T Consensus 17 ~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~~~g~~~eel~g~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~e~~~~ 94 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFD-AEDVQT-QLSGFSVDERRKFEGLYE 94 (126)
T ss_dssp HHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTCC-HHHHHH-HHHTCCTTCEEEEEEEEE
T ss_pred HHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHCCCHHHHHCCCHHHHCCCCC-HHHHHH-HHHHHHHCCCEEEEEEEE
T ss_conf 999999971973299990999899984576888698899983598989168348-999999-999998199669999999
Q ss_pred CCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 221101343324567637998889999888401
Q T0523 82 RAGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
+|||+.+|+.++..++..+|. ..++++++|||
T Consensus 95 ~kdG~~~~~~~~~~~~~~~~~-~~~~~v~~DIT 126 (126)
T 3bwl_A 95 RRDGSTMSVEVHLLRFNLEGE-DRFLAISRDIT 126 (126)
T ss_dssp CTTSCEEEEEEEEEEEEETTE-EEEEEEEEEC-
T ss_pred ECCCCEEEEEEEEEEEEECCE-EEEEEEEEECC
T ss_conf 659959999999999985992-99999999879
No 11
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.79 E-value=1.2e-19 Score=123.48 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=86.5
Q ss_pred CCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 97489965----98687603688864201333111001223443333222222222222222222222222222211013
Q T0523 13 PIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELF 88 (120)
Q Consensus 13 p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 88 (120)
..++++.+ ||+|+|||++|++++||+++|++|+++..+.++ +........+...+..++.+++|+++++|||+.+
T Consensus 3 ~~~~vi~Da~~pDg~Ii~vN~a~~~~~Gy~~~el~G~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGE-GTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCT-TCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCC-CCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEE
T ss_conf 762999948899896999968999988939999808523212465-5799999999886405962999999991799899
Q ss_pred EEEEEEEEE-CCCCCEEEEEEEEEEHHH
Q ss_conf 433245676-379988899998884014
Q T0523 89 WCHVTGRAL-DRTAPLAAGVWTFEDLSA 115 (120)
Q Consensus 89 ~v~~~~~~i-~~~~~~~~~v~~~~DITe 115 (120)
|+.++++|+ +.+|.+.+++++++|||.
T Consensus 82 w~~~~~~pi~d~~G~~~~~v~~~~DITa 109 (109)
T 1n9l_A 82 WNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 9999986899999999999999997699
No 12
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.78 E-value=1.5e-19 Score=122.83 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=83.7
Q ss_pred CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-
Q ss_conf 59868760368886420133311100122344-3333222222222222222222222222222211013433245676-
Q T0523 20 RDRVIEDCNDELAAIFRCARADLIGRSFEVLY-PSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL- 97 (120)
Q Consensus 20 ~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i- 97 (120)
.|++|++||++|++|+||+++|++|+++...+ ++++........+...+..+++++.|+++++|||+.+|+.++++|+
T Consensus 12 ~d~~I~~vN~a~~~~~G~~~~ei~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdg~~~w~~~~~~pv~ 91 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVK 91 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCEEEEECHHHHHHHCCCHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf 98949999889999889697896699804521001023167788888877523642026899957996999999999999
Q ss_pred CCCCCEEEEEEEEEEHHHH
Q ss_conf 3799888999988840147
Q T0523 98 DRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 98 ~~~~~~~~~v~~~~DITer 116 (120)
+.+|.+.+++++++|||||
T Consensus 92 d~~G~i~~~i~~~~DITeR 110 (110)
T 1byw_A 92 NEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEECCCC
T ss_conf 9998999999999976899
No 13
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.77 E-value=1.5e-19 Score=122.84 Aligned_cols=108 Identities=6% Similarity=0.001 Sum_probs=88.8
Q ss_pred HHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899871897489965-9868760368886420133311100122344333322222222222222222222222222221
Q T0523 6 KTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAG 84 (120)
Q Consensus 6 ~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 84 (120)
+.+++++|+++++.+ +|+|+|+|+++++++||++++++|+++.++++++ +.......+. ..+.....++++++||
T Consensus 2 ~~~l~~~~D~i~~~d~~G~i~~vN~~~~~i~Gy~~~el~g~~~~~~~hpe-d~~~~~~~~~---~~~~~~~~~~r~~~kd 77 (111)
T 2vlg_A 2 EFPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEE-DQFLVESYFY---NEHHLMPCTFRFIKKD 77 (111)
T ss_dssp -------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGG-GHHHHHHHHH---CSCCSSCEEEEEECTT
T ss_pred EEEEEECCCEEEEECCCCEEEEECHHHHHHHCCCHHHHHHHHHHCCCCHH-HHHHHHHHHH---HHCCCEEEEEEEECCC
T ss_conf 17668367379999899849999989999878998896554431159888-9999999998---5048606445689589
Q ss_pred CCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHH
Q ss_conf 1013433245676-37998889999888401473
Q T0523 85 GELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATR 117 (120)
Q Consensus 85 G~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerk 117 (120)
|+.+|++++++++ +..|...+.+.+..||||+|
T Consensus 78 G~~~Wve~~~~~i~~~~g~~~r~i~~~~di~e~k 111 (111)
T 2vlg_A 78 HTIVWVEAAVEIVTTRAERTEREIILKMKVLEEE 111 (111)
T ss_dssp SCEEEEEEEEEEC-------CCCEEEEEEEC---
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf 9999999999999879979407999998803279
No 14
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.76 E-value=5.8e-19 Score=119.79 Aligned_cols=107 Identities=13% Similarity=0.190 Sum_probs=89.4
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4268899871897489965-986876036888642013331110012234433332222222222222222222222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
+-+||++|+++|+||++.+ +|+|+++|+++++++||++++++|+++.+++++. +...... ....+.+++.++.|.++
T Consensus 10 e~~fr~i~e~~~~~i~i~d~~g~i~~~N~~~~~~~g~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~e~~~ 87 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGV-DSGWAAA-SLARIVGGEPLREERTV 87 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCS-TTSHHHH-HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCH-HHHHHHH-HHHHHHCCCCCEEEEEE
T ss_conf 999999998167450999699989999399999879597894126732145400-1365789-99999839983789999
Q ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 2221101343324567637998889999888401
Q T0523 81 KRAGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
+++||+.+|+.+++.|+. +|. ++++++|||
T Consensus 88 ~~~dG~~~~~~~~~~~i~-d~~---~~~~~~DIT 117 (117)
T 2r78_A 88 WTRNGDQLTVELSAHLLP-DGK---ILGIARDVS 117 (117)
T ss_dssp ECTTSCEEEEEEEEEECT-TSC---EEEEEEC--
T ss_pred ECCCCCEEEEEEEEEEEE-CCE---EEEEEEECC
T ss_conf 979999999999999988-998---999999794
No 15
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two- component system; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.75 E-value=6.8e-19 Score=119.39 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=86.3
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCC
Q ss_conf 4268899871897489965-9868760368886420133311100122344333322222222222222222----2222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHG----SYAD 76 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (120)
+..|+++|+++|+|+++.+ +|+|+++|+++++++||++++++|+++..+++++. ...........+..+. ....
T Consensus 15 e~~l~~i~~~~~~~ii~~D~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T 1d06_A 15 DAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPY-RHEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp TSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTH-HHHHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 9999999970762169998999699887999988796979974997543368121-799999999999719875565168
Q ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 22222221101343324567637998889999888401
Q T0523 77 DRIMKRAGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 77 e~~~~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
|..++++||+.+|+.++++++..++ ..+++++++|||
T Consensus 94 e~~~~~~~G~~~~v~~~~s~~~~~~-~~~~~~i~~DIT 130 (130)
T 1d06_A 94 VVSGQRKDGSTFPMKLAVGEMRSGG-ERFFTGFIRDLT 130 (130)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEECC-EEEEEEEEEECC
T ss_conf 9999948999999999999999899-489999999787
No 16
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.74 E-value=3.2e-18 Score=115.81 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=90.1
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4268899871897489965-986876036888642013331110012234433332222222222222222222222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
|-.||++++++|+||++.+ +|+++++|+++++++|++++++.|++...+++... ..........+..+.....+.++
T Consensus 2 e~~lr~i~~~~p~~i~~~D~~g~~~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIG--EEWKSVHRRGLAGEVIRVEEDCF 79 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHCTTCC--HHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHCHHHEEECCCCCEEEECHHHHHHHCCCCHHCCCCCCCCCCCCCC--HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 7999999971046729997999699994998987245700026876200123310--23335899998089840034221
Q ss_pred CCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHH
Q ss_conf 22211013433245676-37998889999888401
Q T0523 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DIT 114 (120)
.+++|+.+|+.+++.|+ +.+|.+.+++++++|||
T Consensus 80 ~~~~g~~~~~~~~~~pi~d~~G~v~g~~~~~~DIT 114 (114)
T 3luq_A 80 VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 01378329999999999999999999999999859
No 17
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen fixation, PER-ARNT-SIM, metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.74 E-value=1.3e-18 Score=117.95 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=81.9
Q ss_pred HCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q ss_conf 1897489965-986876036888642013331110012234433332222222222222222----22222222222211
Q T0523 11 LAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAH----GSYADDRIMKRAGG 85 (120)
Q Consensus 11 ~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~dG 85 (120)
+.|+||++.+ +|+|+++|+++++|+||+.++++|+++..++++.+. ......+......+ .....++..+++||
T Consensus 1 t~pd~i~~~d~~g~I~~~N~~~~~l~G~~~~el~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 79 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDR-SRHDSYISRYRTTSDPHIIGIGRIVTGKRRDG 79 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHH-HHHHHHHHHHHHHCCCSSTTTCEEEEEECTTS
T ss_pred CCCEEEEEECCCCCEEEEHHHHHHHHCCCHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 97729999989992998719999986578999725664445663103-56789999999648664356406999861255
Q ss_pred CEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 0134332456763799888999988840147331
Q T0523 86 ELFWCHVTGRALDRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 86 ~~~~v~~~~~~i~~~~~~~~~v~~~~DITerkra 119 (120)
+.+|+.++++++..++ ..+++++++|||++|++
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~i~DITe~k~~ 112 (119)
T 2vv6_A 80 TTFPMHLSIGEMQSGG-EPYFTGFVRDLTEHQQT 112 (119)
T ss_dssp CEEEEEEEEEEEEETT-EEEEEEEEEECC-----
T ss_pred CEEEEEEEECCEECCC-CEEEEEEEEECHHHHHH
T ss_conf 1322356753203399-64999999981899999
No 18
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.74 E-value=7.2e-18 Score=113.95 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=84.1
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC----CCCCCCCC
Q ss_conf 268899871897489965-9868760368886420133311100122344333322--2222222222----22222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEF--ERIGERISPV----MIAHGSYA 75 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~ 75 (120)
..|+.+|+++|+||++++ +|+|+++|+++++|+||++++++|+++..+++.+... .......... ........
T Consensus 7 ~~~~~il~~~~d~i~~~D~~G~I~~~N~aa~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999997235215999599989999979995655997998599099980716577789999999985032203546650
Q ss_pred CCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 22222222110134332456763799888999988840147
Q T0523 76 DDRIMKRAGGELFWCHVTGRALDRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 76 ~e~~~~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DITer 116 (120)
.|+.++++||+.+|+.++.+++..++ ..++++++||--.
T Consensus 87 ~Ev~~~~~dG~~~~velsis~~~~~~--~~~v~v~rDI~~~ 125 (129)
T 3mfx_A 87 QETTLICASGKAKDVELSISYIPGHE--PMFVMVMHDLEHH 125 (129)
T ss_dssp EEEEEECTTSCEEEEEEEEEEECSSS--CEEEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCC--CEEEEEEEECCCC
T ss_conf 47999978997999999999998999--6999999989753
No 19
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Probab=99.72 E-value=2.8e-18 Score=116.10 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=87.0
Q ss_pred CEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 489965-9868760368886420133311100122344333322222222222222222222222222221101343324
Q T0523 15 GLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVT 93 (120)
Q Consensus 15 gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~ 93 (120)
-+...+ ||+++++|+++++++||+++|++|+++..++++++ .....+.+......+..+..|.+++++||+.+|+.++
T Consensus 11 fi~~~~~dg~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~iwv~~~ 89 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALD-SENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQ 89 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGG-HHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEEE
T ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCEEEEECHHH-CCHHHHHHHHCCCCCCCEECCEEEECCCCCEEEEEEE
T ss_conf 899999999899999899998596967911630016727135-1112333321111122100110018799979999999
Q ss_pred EEEE-CCC-CCEEEEEEEEEEHHHHHH
Q ss_conf 5676-379-988899998884014733
Q T0523 94 GRAL-DRT-APLAAGVWTFEDLSATRR 118 (120)
Q Consensus 94 ~~~i-~~~-~~~~~~v~~~~DITerkr 118 (120)
++|+ +.. |.+.+++++.+||||+||
T Consensus 90 ~~~i~d~~~~~~~~iv~~~~dITe~k~ 116 (117)
T 3f1p_A 90 GTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 999997899939999999999952304
No 20
>3eeh_A Putative light and redox sensing histidine kinase; structural genomics, PSI, MCSG, protein structure initiative; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.70 E-value=1.9e-17 Score=111.77 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=90.0
Q ss_pred CHHHHHHHHHCCCCEEEEC-C-CEEEEECHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4268899871897489965-9-8687603688864201333111001--2234433332222222222222222222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-D-RVIEDCNDELAAIFRCARADLIGRS--FEVLYPSSDEFERIGERISPVMIAHGSYADD 77 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~-g~i~~~N~~~~~~~G~~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 77 (120)
+..|+.+++++|.+|+..+ + ++++|+|+++++++||+++++.+.+ +..+ .++++.+.+...+ ..+..+++++.|
T Consensus 10 e~r~~~i~e~~~~~i~~~d~~~~~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~-ihpdd~~~~~~~~-~~~~~~~~~~~e 87 (125)
T 3eeh_A 10 ERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNG-IHPEDRELMKDTM-QSLMDGESADVE 87 (125)
T ss_dssp CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGG-BCHHHHHHHHHHH-HHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHH-HHCCCCCEEEEE
T ss_conf 99999998649844999999899599978388651234532111110144205-8752032035442-220343204677
Q ss_pred CCCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHH
Q ss_conf 22222211013433245676-37998889999888401
Q T0523 78 RIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 78 ~~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DIT 114 (120)
++++++||+.+|+..++.|+ +.+|.+.+++++++|||
T Consensus 88 ~r~~~~~G~~~wv~~~~~~i~d~~g~~~~~~g~~~DIT 125 (125)
T 3eeh_A 88 CRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp EEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf 88786998789999999999999989999999999809
No 21
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.69 E-value=4e-17 Score=110.00 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=90.3
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268899871897489965-9868760368886420133311100122344333322222222222222222222222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
..++.+++++|.+|++.+ +|+++++|+++++++||++++++|+++..++++.+ ...........+..++.+.+|+..+
T Consensus 111 ~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~ 189 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLA-DQETLAAMQEALQAGQPWSGRLLNR 189 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTS-CHHHHHHHHHHHHHTCCEECCEEEE
T ss_pred HHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHCCCCHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 767999986410269984897599998688764499979962146542114542-1013456677652267469999999
Q ss_pred ------CCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEE
Q ss_conf ------2211013433245676-379988899998884
Q T0523 82 ------RAGGELFWCHVTGRAL-DRTAPLAAGVWTFED 112 (120)
Q Consensus 82 ------~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~D 112 (120)
++||+.+|++++++|+ +.+|.+.+++++++|
T Consensus 190 ~k~~~~~~dG~~~wv~~~~~pi~~~~g~~~~~~~i~~D 227 (227)
T 3ewk_A 190 RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp EECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred EECCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEC
T ss_conf 84374567982999999999999899999999999989
No 22
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.75A {Streptococcus mutans UA159}
Probab=99.68 E-value=4.4e-17 Score=109.78 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=85.9
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965-98687603688864--2013331110012234433332222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAI--FRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~--~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
.|++||+++|++|++.| +|+|+++|++++.+ +|+..++++|+++.+++++.. .... ......+..+.....+..+
T Consensus 20 ~l~~il~~~P~~i~~~D~~~~i~~~N~~~~~~~~~~~~~~~~iG~~~~~~~p~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 97 (151)
T 2qkp_A 20 QANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKV-LDKV-KKVFELLRNGQRDKVNMWF 97 (151)
T ss_dssp HHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSBGGGSSCHHH-HHHH-HHHHHHHHTTSBSEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEECCCHHHCEECCCHHHHHCCCEEEECCCCC-CCCC-HHEEECCCCCCCCEECCCC
T ss_conf 9999996398309999699979998323131220247807860751148815533-4420-1102101246511000000
Q ss_pred CCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 22211013433245676-3799888999988840147331
Q T0523 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
..+|..+|+.+++.|+ +.+|.+.|++++++|||++|++
T Consensus 98 -~~~~~gr~i~~~~~pv~d~~G~~~g~i~~~~DITe~k~~ 136 (151)
T 2qkp_A 98 -QSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFEL 136 (151)
T ss_dssp -EETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGG
T ss_pred -CCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHHHH
T ss_conf -012577158886334687999899999999989799999
No 23
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.90A {Marinobacter aquaeolei VT8}
Probab=99.65 E-value=9.2e-17 Score=108.09 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=86.9
Q ss_pred CCCEE-EEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 97489-965-9868760368886420133311100122344333322222222222222222222222222221101343
Q T0523 13 PIGLV-LSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWC 90 (120)
Q Consensus 13 p~gi~-~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v 90 (120)
..+++ ++. .+++.|+|+++.+++||++++++|......+.++++...+...+...+..+..++.|++++++||+.+|+
T Consensus 3 ~~~~W~~D~~t~~~~yvn~~~~~i~G~~~e~~~~~~~~~~~i~pdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~wv 82 (115)
T 3h9w_A 3 KAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWI 82 (115)
T ss_dssp CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEE
T ss_pred CEEEEEEECCCCEEEEECHHHHHHHCCCHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHH
T ss_conf 47999998999989999999999849997882893033201225679999999999985597078999999605652011
Q ss_pred EEEEEEE-CCCCCEEEEEEEEEEHHHHHH
Q ss_conf 3245676-379988899998884014733
Q T0523 91 HVTGRAL-DRTAPLAAGVWTFEDLSATRR 118 (120)
Q Consensus 91 ~~~~~~i-~~~~~~~~~v~~~~DITerkr 118 (120)
+++++|+ +.+|.+.+++++++|||++..
T Consensus 83 ~~~~~~~~d~~g~~~~~~g~~~DITee~~ 111 (115)
T 3h9w_A 83 RDVVHVVRDDSGEVEALIGFMFDISLEHH 111 (115)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECGGGGC
T ss_pred EEECEEEECCCCCEEEEEEEEEEECCCCC
T ss_conf 02010499999899999999998997876
No 24
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.65 E-value=1.1e-16 Score=107.75 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=95.9
Q ss_pred CHHHHHHHHHCCCCEEEEC-CC--EEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4268899871897489965-98--68760368886420133311100122344333322222222222222222222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DR--VIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDR 78 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g--~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 78 (120)
+-+||++++++|.+|+..+ +| +++++|+++..++|++..+..+..+.++.+ +++.+.+...+......+..+..|.
T Consensus 3 ~e~~r~l~d~~p~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~~~~~~~e~ 81 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIH-HDDRHMLSNAYSKLREAKHSLTLVY 81 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBC-GGGHHHHHHHHHHHHHSCCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEECCHHHHCCCCCCHHHHCCCCHHHHCC-HHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 899999985494018999888988999657687463284958865898899569-8899898852002332234431201
Q ss_pred CCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHH
Q ss_conf 2222211013433245676-37998889999888401
Q T0523 79 IMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 79 ~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DIT 114 (120)
+++++||+.+|+.+++.|+ +.+|.+.++++++.|||
T Consensus 82 ~~~~~~g~~~wv~~~~~~~~d~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 82 RIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 5782599799999999999999979999999999779
No 25
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.65 E-value=1.6e-17 Score=112.12 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=86.1
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268899871897489965-9868760368886420133311100122344333322222222222222222222222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
-+++.+|+++|+|+++.| +|+|+++|+++++++|+++++++|+++.+++|... ...+...+.+++..+.+...|....
T Consensus 12 ~~~e~~~~~~~~Gi~~vD~dgri~~~N~a~~~llG~~~eeliGk~~~e~~p~~~-~~~~~~~~~~~~~~g~~~~~e~~~~ 90 (118)
T 3fg8_A 12 SGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQ-GSYFDALCRKVLATGREQQTRVDSL 90 (118)
T ss_dssp -CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGT-TSHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHCCCHHHHCCCCHHHHCCHHH-CCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 359999970898999997998299898998988578999985996999484533-1105678999985398499999998
Q ss_pred CCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 22110134332456763799888999988840147
Q T0523 82 RAGGELFWCHVTGRALDRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DITer 116 (120)
.++| .|+.+++.|.. + +++++++|||++
T Consensus 91 ~~~~--~w~~v~~~p~~-d----Gi~v~~rDIT~q 118 (118)
T 3fg8_A 91 YSPG--MTIEVTAAADS-G----ALVVHFRDVTAE 118 (118)
T ss_dssp SSTT--CEEEEEEEEET-T----EEEEEEEECSCC
T ss_pred CCCC--EEEEEEEEECC-C----EEEEEEEECCCC
T ss_conf 8899--89999999879-9----999999982799
No 26
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=99.65 E-value=1.4e-16 Score=107.09 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97489965----9868760368886420133311100122344333322----------222222222222222222222
Q T0523 13 PIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEF----------ERIGERISPVMIAHGSYADDR 78 (120)
Q Consensus 13 p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~e~ 78 (120)
+.++++.| |++|+|||++|++|+||+++|++|+++..++...... ....+.++..+..++.++.|+
T Consensus 35 s~ai~i~D~~~~D~~Ii~vN~af~~~tGys~eEviGr~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~E~ 114 (149)
T 3d72_A 35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEV 114 (149)
T ss_dssp TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCCEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 53199996999989799986899988892999985986213017102135432222279999999999997698599999
Q ss_pred CCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEE
Q ss_conf 2222211013433245676-379988899998
Q T0523 79 IMKRAGGELFWCHVTGRAL-DRTAPLAAGVWT 109 (120)
Q Consensus 79 ~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~ 109 (120)
.+++|||+.+|+.++++|+ +.+|.+.++|++
T Consensus 115 ~~~~kdG~~~wv~~~~~pv~De~G~v~~~vGi 146 (149)
T 3d72_A 115 VNFKKNGQRFVNFLTMIPVRDETGEYRYSMGF 146 (149)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf 87859998999999999999999899999999
No 27
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 43049, structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.62 E-value=1.2e-16 Score=107.47 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=86.3
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4268899871897489965-986876036888642013331110012234433332222222222222222222222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
+..|+++|+++|+||++.+ +|+|+++|+++++++||++++++|+++.++++++ ....+...+...+..+.....+...
T Consensus 18 ~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (125)
T 3fc7_A 18 RKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSE-AANQRLEAGKSAVENGTATRSEDAV 96 (125)
T ss_dssp --------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHH-HHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999999997641123233543069998620000222322222221222222211-1245677888765314443101110
Q ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 2221101343324567637998889999888401
Q T0523 81 KRAGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
..+|...+..|++.+|...+++++++|||
T Consensus 97 -----~~r~~~~~~~pv~~~~~~~~~~~v~~DIT 125 (125)
T 3fc7_A 97 -----GGRHYHNQYIPVDSHRKSDTFQLVSRDIT 125 (125)
T ss_dssp -----TTEEEEEEEEESSTTTTTTEEEEEEEECC
T ss_pred -----CCCCCCEEEEEEEECCCEEEEEEEEEECC
T ss_conf -----01145308999990898999999999793
No 28
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=4.8e-16 Score=104.27 Aligned_cols=107 Identities=9% Similarity=0.041 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965-98687603688864201333111001223443333222222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKR 82 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (120)
-++++++++|.||++.+ +|+|+++|+++++++|++.++++|+++.++++..+. ....+...+..++.+..+...++
T Consensus 8 l~~~il~~~~~~i~~iD~~g~I~~~N~aa~~l~g~s~~el~G~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 84 (115)
T 3b33_A 8 LPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL---DLALLTQPLQSGQSITDSDVTFV 84 (115)
T ss_dssp HHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC---CTHHHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHCCCCHHHHCCCCHH---HHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 999998514765999979999999896999774654887749859998598067---78999999982997178999999
Q ss_pred CCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 21101343324567637998889999888401
Q T0523 83 AGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
+||+.+|+.+++.|+..+++ ..++..++||-
T Consensus 85 ~~G~~~~v~~s~~pi~~~~~-~~ilv~~rdid 115 (115)
T 3b33_A 85 VDGRPLMLEVTVSPITWQRQ-LMLLVEMRKID 115 (115)
T ss_dssp ETTEEEEEEEEEEEEEETTE-EEEEEEEEEC-
T ss_pred ECCCEEEEEEEEEEEEECCC-EEEEEEEEECC
T ss_conf 79919999999999995997-79999999687
No 29
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein structure initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.60 E-value=1.2e-15 Score=102.08 Aligned_cols=109 Identities=12% Similarity=0.194 Sum_probs=80.8
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965-98687603688864201333111001223443333222222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKR 82 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (120)
.+++||+++|++|++.| +|+|+++|++ .++++. .++++|+++.+++++. ...... .+...+..|.....+.. .+
T Consensus 240 ~l~~il~~~p~~i~~vD~~~~i~~~N~a-~~~~~~-~~~~iG~~~~~~~p~~-~~~~~~-~~~~~~~~g~~~~~e~~-~~ 314 (369)
T 3cax_A 240 ELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIFTR-TPSVLGRPVQLCHPPK-SVYVVN-KILKAFKEGRKKEATFW-LR 314 (369)
T ss_dssp HHHHHHHHSSSEEEEECTTSBEEEECCS-SCSSCC-CGGGTTCBTTTSSCGG-GHHHHH-HHHHHHHHTSCSCEEEE-EE
T ss_pred HHHHHHHCCCCCEEEECCCCEEEEECHH-HHHHCC-CHHHHCCCHHHHCCHH-HHHHHH-HHHHHHHCCCCEEEEEE-EE
T ss_conf 9999997297878999289939998677-787498-8898298426728976-799999-99999977995389999-93
Q ss_pred CCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 211013433245676-3799888999988840147331
Q T0523 83 AGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
++|. |+.++..|+ +.+|...|++++++|||++|++
T Consensus 315 ~~g~--~~~~~~~Pv~d~~G~~~G~v~~~~DITe~k~~ 350 (369)
T 3cax_A 315 LREK--YVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKI 350 (369)
T ss_dssp ETTE--EEEEEEEEEECTTSCEEEEEEEEEECHHHHTC
T ss_pred ECCE--EEEEEEEEEECCCCCEEEEEEEEEECHHHHHH
T ss_conf 1998--99999998999898999999999998699999
No 30
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.60 E-value=1.3e-15 Score=102.02 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=84.8
Q ss_pred EEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 89965-98687603688864201333111001223443333222222222222222222222222222211013433245
Q T0523 16 LVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTG 94 (120)
Q Consensus 16 i~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~ 94 (120)
|++.| +|+|+++|++|++++||+++|++|+++..++++.. ..............+.....|..+++++|..+|+.+++
T Consensus 2 i~i~D~~G~i~~~N~a~~~~~G~~~eel~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~ 80 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYH-GKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTI 80 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCS-CHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEE
T ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEE
T ss_conf 99995999989833889998892999994998889289413-46776677776402772458999994154348765566
Q ss_pred EEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 676-3799888999988840147331
Q T0523 95 RAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 95 ~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
+|+ +..|...+++.+..|+|+++++
T Consensus 81 ~~~~~~~g~~~~~~~~~~d~~~~~~~ 106 (227)
T 3ewk_A 81 VPLMDNAGKPRQYISIRRDITAQKEA 106 (227)
T ss_dssp EEEECSSSCEEEEEEEEEECTTTTHH
T ss_pred EEEECCCCCEEEEEEEEHHHHHHHHH
T ss_conf 55653689763321232023699999
No 31
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.56 E-value=4.2e-15 Score=99.28 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=78.8
Q ss_pred HHHHCCCCEEEEC--CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf 9871897489965--986876036888642013331110012234433332222222222222222----2222222222
Q T0523 8 AFHLAPIGLVLSR--DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAH----GSYADDRIMK 81 (120)
Q Consensus 8 i~e~~p~gi~~~~--~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~ 81 (120)
+.+.+..+|++.+ +|+|+++|+++++|+||++++++|+++.++++++.. ......+......+ .....++.++
T Consensus 3 ~~~~~n~ai~~~d~~~G~I~~vN~~a~~l~Gys~~el~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (114)
T 1ll8_A 3 MDPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDS-DVVEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp SSTTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTT-HHHHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred CHHHCCEEEEEEECCCCEEEEHHHHHHHHHCCCHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEEEEEEE
T ss_conf 401127189999999999996238999987859899929800011380059-9999999999965897000102598888
Q ss_pred CCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf 2211013433245676379988899998884014
Q T0523 82 RAGGELFWCHVTGRALDRTAPLAAGVWTFEDLSA 115 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DITe 115 (120)
+|||+.+|+.++++++..+++ ..++++++||+.
T Consensus 82 ~kdG~~~pv~l~~~~i~~~~~-~~~v~vi~dv~r 114 (114)
T 1ll8_A 82 SRSGEKIPVSVWMKRMRQERR-LCCVVVLEPVER 114 (114)
T ss_dssp CTTCCCEEEECCEECCBSSSS-BEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEEEEECCE-EEEEEEEEECCC
T ss_conf 159979999999999999994-799999997649
No 32
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.54 E-value=7.4e-15 Score=97.96 Aligned_cols=106 Identities=8% Similarity=-0.096 Sum_probs=81.4
Q ss_pred HHHHHHHCCCCEEEE-CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889987189748996-5986876036888642013331110012234433332222222222222222222222222222
Q T0523 5 YKTAFHLAPIGLVLS-RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRA 83 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~-~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (120)
.+.+++++|.|+++. .+|+|+++|+++++|+||++++++|+++..++.+......+...+......+.....+....++
T Consensus 19 ~~~~ld~~~~Gii~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 98 (125)
T 1nwz_A 19 DDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDY 98 (125)
T ss_dssp CHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECT
T ss_pred HHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 99998568826999979999976889999885866687679704440487001799999999999749971589999714
Q ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 110134332456763799888999988840
Q T0523 84 GGELFWCHVTGRALDRTAPLAAGVWTFEDL 113 (120)
Q Consensus 84 dG~~~~v~~~~~~i~~~~~~~~~v~~~~DI 113 (120)
+|..+|+.++..+.. +|+. ....++||
T Consensus 99 ~g~~~~V~v~~~~~~-~g~~--~~v~V~~i 125 (125)
T 1nwz_A 99 QMTPTKVKVHMKKAL-SGDS--YWVFVKRV 125 (125)
T ss_dssp TSCCEEEEEEEEECS-SSSE--EEEEEEEC
T ss_pred CCCEEEEEEEEEEEC-CCCE--EEEEEEEC
T ss_conf 996899999999913-8996--99999989
No 33
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.53 E-value=3e-15 Score=100.01 Aligned_cols=117 Identities=12% Similarity=0.069 Sum_probs=89.7
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC
Q ss_conf 4268899871897489965-98687603688864201333111001223443333222222222222-----22222222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPV-----MIAHGSYA 75 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 75 (120)
+..|+.+++++|.+++..+ ++.++++|++++.++||+++++.+..+..++++.+ ........... ...+..+.
T Consensus 147 e~~~r~l~e~~~~~i~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 1wa9_A 147 KVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHED-LSVMKETYETVMKKGQTAGASFCS 225 (368)
T ss_dssp CSTTCBCCTTSCEEEEEEETTCBEEEECGGGHHHHCCCHHHHTTSBGGGGBCTTT-HHHHHHHHHHHHHHTTSTTCCEEC
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHCCCCCCHHHCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 7788999851970699991699688520011211344401202232234554234-999999998755531356665421
Q ss_pred CCCCCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 2222222211013433245676-3799888999988840147331
Q T0523 76 DDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 76 ~e~~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
.++++++|||+++|+..++.|+ +..|...++++.+.|||++|++
T Consensus 226 ~e~r~~~k~G~~~wv~~~~~~~~d~~g~~~~~v~~~~dIt~~~~~ 270 (368)
T 1wa9_A 226 KPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 270 (368)
T ss_dssp CCEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred HHHEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCHHH
T ss_conf 101002058988999999999997899807899999991412532
No 34
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.53 E-value=1.4e-15 Score=101.76 Aligned_cols=116 Identities=9% Similarity=-0.023 Sum_probs=82.9
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 268899871897489965-9868760368886420133311100122344333322222222222222222--2222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHG--SYADDRI 79 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~ 79 (120)
..++.+.++++.+++..+ +|.++++|+++++++||+++++.|..+..+++++ +...+.+........++ .+..|++
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~~~n~~~~~~lG~~~~e~~~~~~~~~~hpe-D~~~~~~~~~~~~~~~~~~~~~~e~r 233 (309)
T 3gdi_A 155 YEAPRIPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPS-DRPLMLAIHKKILQAGGQPFDYSPIR 233 (309)
T ss_dssp TSSSCCCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTT-SHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred HHHHHHHCCCCCEEEEECCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 45443320476238997178519997627742024575322233323455401-19999999999987547873123556
Q ss_pred CCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 222211013433245676-3799888999988840147331
Q T0523 80 MKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 80 ~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
+++|||+++|+..+++++ +..++...+++.+.|+|++|+.
T Consensus 234 ~~~~dG~~~wv~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~ 274 (309)
T 3gdi_A 234 FRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLN 274 (309)
T ss_dssp EECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred EECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCHHH
T ss_conf 67699919999999999991799956899999998864321
No 35
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.48 E-value=2.6e-14 Score=95.07 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=75.0
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 4268899871897489965-986876036888642013331110012234433332222222222222222222-22222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSY-ADDRI 79 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~ 79 (120)
+.-++++++++|.||++.| +|+|+++|+++++|+||++++++|+++...+.+......+...+...+..+... ..++.
T Consensus 21 ~~~~~a~lda~p~GIi~~D~~GrI~~~N~aa~~l~G~~~eeliGr~~~~~~~P~~~~~~~~~~~~~~l~~G~~~~~~~~~ 100 (129)
T 1mzu_A 21 DGMGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV 100 (129)
T ss_dssp C---CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88999998659905999989995999978999886839899779937780787666789999999999759986158999
Q ss_pred CCCCCCCEEEEEEEEEEECCCC
Q ss_conf 2222110134332456763799
Q T0523 80 MKRAGGELFWCHVTGRALDRTA 101 (120)
Q Consensus 80 ~~~~dG~~~~v~~~~~~i~~~~ 101 (120)
.+++|..+|+.++..+....|
T Consensus 101 -~~~~g~~~~V~v~l~~~p~~~ 121 (129)
T 1mzu_A 101 -FDFQMAPVRVQIRMQNAGVPD 121 (129)
T ss_dssp -EECSSCEEEEEEEEEECSSTT
T ss_pred -EECCCCEEEEEEEEEECCCCC
T ss_conf -943996699999999826899
No 36
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.43 E-value=2.9e-14 Score=94.78 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=73.8
Q ss_pred HHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899871897489965-986876036888642013331110012234433332222222222222222222222222222
Q T0523 5 YKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRA 83 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (120)
++++|+++|.||++.+ +|+|+++|+++++++||++++++|+++.+++...+. ... .......+. .......+
T Consensus 10 ~e~il~~~~~gi~v~d~~g~i~~~N~aa~~llg~~~~e~~g~~~~~l~~~~~~-~~~---~~~~~~~~~---~~~~~~~~ 82 (349)
T 3a0r_A 10 SESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEI-GSV---AESVFENKE---PVFLNFYK 82 (349)
T ss_dssp CCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHH-HHH---HHHHHHHCC---CCEEECCC
T ss_pred HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCHHHCCCHHHH-HHH---HHHHHHCCC---EEEEEEEC
T ss_conf 99999864267489989590027069999997829899859987894897889-999---999982598---39999970
Q ss_pred CCCEEEEEEEEEEEC-CCC-CEEEEEEEEEEHHHHHHC
Q ss_conf 110134332456763-799-888999988840147331
Q T0523 84 GGELFWCHVTGRALD-RTA-PLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 84 dG~~~~v~~~~~~i~-~~~-~~~~~v~~~~DITerkra 119 (120)
+|. .|+.++.+|+. ..+ ...+++.+++|||++|++
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~g~v~~~~DIT~~~~~ 119 (349)
T 3a0r_A 83 FGE-RYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKY 119 (349)
T ss_dssp BTT-BCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTT
T ss_pred CCC-EEEEEEEEEEECCCCCEEEEEEEEEEEHHHHHHH
T ss_conf 881-8999999999828987788999999845599999
No 37
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.38 E-value=1.7e-13 Score=90.74 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=72.1
Q ss_pred EEE-CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------------CC---C
Q ss_conf 996-5986876036888642013331110012234433332222222222222---------------------22---2
Q T0523 17 VLS-RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVM---------------------IA---H 71 (120)
Q Consensus 17 ~~~-~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~---~ 71 (120)
++. +||+|+|||+++++++||+++|++|+++.++++++ +...+.+.+.... .. .
T Consensus 12 vi~~~dG~I~~vN~~~~~ilGys~eEliG~~~~dlihPe-D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (368)
T 1wa9_A 12 VISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLK-DRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGL 90 (368)
T ss_dssp EEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCTT-THHHHHHHTTSCC------------CCCEEEEEEECSCCC
T ss_pred EEECCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCHH-HHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEEECCCCCE
T ss_conf 999999889999879999879399998699799964997-8999999862366653010245656607999962220230
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 22222222222211013433245676-3799888999988840147331
Q T0523 72 GSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 72 ~~~~~e~~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
.....+.....++|..+|+.....++ +..+...+++++..|||++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~~~~Dit~~k~~ 139 (368)
T 1wa9_A 91 KSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICA 139 (368)
T ss_dssp SSCCSSSCCCCCCEEEEEEECCBCCCCCCCC------CCSCCCEEEEEE
T ss_pred EECCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 5733466534464489999999986344567733222444237799998
No 38
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.36 E-value=3.1e-13 Score=89.31 Aligned_cols=113 Identities=11% Similarity=0.008 Sum_probs=81.0
Q ss_pred HHHHHHCCCCEE-EEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 899871897489-965-986876036888642013331110012234433332222222222222-22222222222222
Q T0523 6 KTAFHLAPIGLV-LSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVM-IAHGSYADDRIMKR 82 (120)
Q Consensus 6 ~~i~e~~p~gi~-~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~ 82 (120)
+.++++++..++ +.+ +|+|+|||+++++++||+++|++|+++.+++++++ ...+...+.... ..+.....+....+
T Consensus 18 e~~l~~~~~f~iv~~~~dG~I~~vN~~~~~llGys~eEl~g~~~~~lihp~d-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 96 (309)
T 3gdi_A 18 EYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHD-VSVFHSYTTPYKLPPWSVCSGLDSFTQ 96 (309)
T ss_dssp C----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTT-HHHHHHHTCTTSSCBCC----------
T ss_pred HHHHHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHH-HHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 9999705887999997998799997899998597999985997889389888-899999976531477653320444553
Q ss_pred CCCCEEEEEEEEEEEC-CC----CCEEEEEEEEEEHHHHHHC
Q ss_conf 2110134332456763-79----9888999988840147331
Q T0523 83 AGGELFWCHVTGRALD-RT----APLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i~-~~----~~~~~~v~~~~DITerkra 119 (120)
++|...|+.+...+.. .. +....+.++..|||++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dit~~~~~ 138 (309)
T 3gdi_A 97 ECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGA 138 (309)
T ss_dssp ----CCCEEEEECCCC----CCCCEEEEEEEEEEECC-----
T ss_pred CCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCHHHH
T ss_conf 056523788752114443457617899998899874002234
No 39
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.30A {Escherichia coli}
Probab=99.29 E-value=2.3e-13 Score=90.06 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268899871897489965-9868760368886420133311100122344333322222222222222222222222222
Q T0523 3 IDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
..|+++++++|+||++.| +|+|+++|+++++|||+++++++|+++..++++...... .... ........+
T Consensus 80 ~~~~~il~~~~d~i~~~D~~g~i~~~N~aa~~l~g~~~~~~~g~~~~~l~~~~~~~~~--------~~~~-~~~~~~~~v 150 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW--------LESE-PQDSHNEHV 150 (190)
T ss_dssp HHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHHHH--------HHTC-CCSCEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHCCHHHHCCCHHHHHH--------HHHC-CCCCCEEEE
T ss_conf 9999999706424399989999999899999987919999963879995896769999--------9707-764421999
Q ss_pred CCCCCEEEEEEEEEEE---CCCCCEEEEEEEEEEHHHH
Q ss_conf 2211013433245676---3799888999988840147
Q T0523 82 RAGGELFWCHVTGRAL---DRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i---~~~~~~~~~v~~~~DITer 116 (120)
..+|+.+.+..+-..+ +.++...|.|.+++|+|+-
T Consensus 151 ~~~G~~~~~~~~pi~~~~~~~~~~~~G~Vi~~r~~tr~ 188 (190)
T 2jhe_A 151 VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 (190)
T ss_dssp EETTEEEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTT
T ss_pred EECCEEEEEEEEEEEEECCCCCCEEEEEEEEEECHHHC
T ss_conf 99997999999999986468983899999999878884
No 40
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.23 E-value=7.8e-12 Score=81.88 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=67.8
Q ss_pred CCCCEEE-ECCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 8974899-659868760368886420133311100122344333322222222222222222222222222221101343
Q T0523 12 APIGLVL-SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWC 90 (120)
Q Consensus 12 ~p~gi~~-~~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v 90 (120)
.+.||++ +.+|+|+++|+++++|+||+.++++|+++.++++..+. ...+......+... ....+++..+|+
T Consensus 1 m~~gvi~~D~~g~I~~~N~~a~~l~g~~~~e~iG~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~ 72 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEI----GSVAESVFENKEPV----FLNFYKFGERYF 72 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGSTTCHHH----HHHHHHHHHHTCCE----EEEEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHHHHHH----HHHHHHHHHCCCEE----EEEEECCCCEEE
T ss_conf 9879999989898999987989875999899769839995010013----25899998479589----999987991999
Q ss_pred EEEEEEE-CCCCC-EEEEEEEEEE
Q ss_conf 3245676-37998-8899998884
Q T0523 91 HVTGRAL-DRTAP-LAAGVWTFED 112 (120)
Q Consensus 91 ~~~~~~i-~~~~~-~~~~v~~~~D 112 (120)
.++++|+ +.+|. +.+++.++.|
T Consensus 73 ~v~~~Pi~~~~~~~i~g~v~~~~D 96 (96)
T 3a0s_A 73 NIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 999999891899999999999989
No 41
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.20 E-value=3.6e-12 Score=83.65 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=72.7
Q ss_pred ECCCEEEEECHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 65986876036888-642013331110012234433332222-2222222222222222222222221101343324567
Q T0523 19 SRDRVIEDCNDELA-AIFRCARADLIGRSFEVLYPSSDEFER-IGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRA 96 (120)
Q Consensus 19 ~~~g~i~~~N~~~~-~~~G~~~~el~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~ 96 (120)
+-+|+|++||+++. .++||.++|++|+++.+++++++.... ...........+..+..++++++|||+++|++.++++
T Consensus 14 ~ldg~i~~vd~~~~~~l~gy~~eelig~s~~~~~Hp~D~~~~~~~~~~~~~~~~~~~~t~~yR~r~KdG~~vWv~t~~~l 93 (132)
T 1oj5_A 14 DTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKL 93 (132)
T ss_dssp CTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEECCHHHHHHHCCCHHHHCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEECCCEEEEEEEEEEE
T ss_conf 79971999981786766088979994991989388453135667778887751685113455036549809999998899
Q ss_pred E-CCCC-CEEEEEEEEEEHHHHH
Q ss_conf 6-3799-8889999888401473
Q T0523 97 L-DRTA-PLAAGVWTFEDLSATR 117 (120)
Q Consensus 97 i-~~~~-~~~~~v~~~~DITerk 117 (120)
+ +..+ .+..++++-..++++.
T Consensus 94 ~~~~~~~~~~~Ii~~h~i~~e~~ 116 (132)
T 1oj5_A 94 CYPQSPDMQPFIMGIHIIDREHS 116 (132)
T ss_dssp ECC----CCCEEEEEEEEECC--
T ss_pred EECCCCCCCEEEEEEEEECCCCC
T ss_conf 98279998159999999525743
No 42
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.19 E-value=7.4e-12 Score=82.00 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=71.7
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899871897489965-98687603688864201333111001223443333222222222222222222222222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKR 82 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (120)
.++++|++.++||++.+ +|+|+++|+++++++|++.+. +|+.....+....... .+...+..+.....+. ..
T Consensus 16 ~~~~il~~i~dgvi~iD~~g~I~~~N~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~--~~ 88 (118)
T 2w0n_A 16 QRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQ-DDEKLSTLSHSWSQVV----DVSEVLRDGTPRRDEE--IT 88 (118)
T ss_dssp HHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTT-TTSSCCCTTCCCSCTH----HHHHHHHTTCCCCCCC--EE
T ss_pred HHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHH-HCCCHHHHCCCCHHHC----HHHHHHHCCCEEEEEE--EE
T ss_conf 999999714781899989990999998999886689889-6793677547802325----3899985598346699--99
Q ss_pred CCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 21101343324567637998889999888401
Q T0523 83 AGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
.+|+. +.+++.|+..+|...|+|.+++|||
T Consensus 89 ~~~~~--~~v~~~Pi~~~~~~~G~V~~~~DIT 118 (118)
T 2w0n_A 89 IKDRL--LLINTVPVRSNGVIIGAISTFRDKT 118 (118)
T ss_dssp SSSCE--ECCCEECCCCSSCCCCEEECCCCCC
T ss_pred ECCEE--EEEEEEEEEECCEEEEEEEEEEECC
T ss_conf 89999--9999999999998999999999669
No 43
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.55 E-value=4.3e-08 Score=61.97 Aligned_cols=115 Identities=10% Similarity=-0.065 Sum_probs=73.4
Q ss_pred HHHHHHHHCCCCEEEEC--CCEEEEECHHHHHHHHCCCCCCCCC-------CCCCCCCCCCCCCCCCCC---CCC---CC
Q ss_conf 68899871897489965--9868760368886420133311100-------122344333322222222---222---22
Q T0523 4 DYKTAFHLAPIGLVLSR--DRVIEDCNDELAAIFRCARADLIGR-------SFEVLYPSSDEFERIGER---ISP---VM 68 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~--~g~i~~~N~~~~~~~G~~~~el~g~-------~~~~~~~~~~~~~~~~~~---~~~---~~ 68 (120)
-++++.+.+|..+++.| +++..++|+.+.+++||++++.... .+..-+.+|++....... ... ..
T Consensus 34 ~~~~~a~~~~~~~~i~Dl~~~~~~y~s~~~~~~lGy~~~e~~~~~i~s~~~~~~~~~ihP~D~~~~~~~~~~~~~~l~~~ 113 (258)
T 3clo_A 34 FVRSLTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYKFFQKTFSM 113 (258)
T ss_dssp HHHHHHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCHHHCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999985788789998878889998653999839996662314543044046662589789999999999999987517
Q ss_pred CC--CC--CCCCCCCCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHH
Q ss_conf 22--22--2222222222211013433245676-379988899998884014733
Q T0523 69 IA--HG--SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRR 118 (120)
Q Consensus 69 ~~--~~--~~~~e~~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkr 118 (120)
.. .. ....++++++++|.++|+.-.+.++ +..++....++.+.|++..+.
T Consensus 114 ~~~er~~y~~~~~~R~~~~~G~y~wv~~r~~vl~~~~~g~i~~~l~~~d~~~~~~ 168 (258)
T 3clo_A 114 SPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTPAGNVWLIFCLYSLSADQR 168 (258)
T ss_dssp CHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred CHHHHHEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCC
T ss_conf 8654111357899999869999999986677874389988011133234443333
No 44
>2vea_A Phytochrome-like protein CPH1; arginine finger, phosphorylation, tandem GAF domain, knot, kinase, receptor, PAS domain, chromophore; HET: CYC; 2.21A {Synechocystis SP} SCOP: d.110.2.1 d.110.2.4 d.110.3.9
Probab=98.14 E-value=3.9e-06 Score=51.56 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=35.8
Q ss_pred CCCE--EEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9748--9965-98687603688864201333111001223443333
Q T0523 13 PIGL--VLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSD 55 (120)
Q Consensus 13 p~gi--~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~ 55 (120)
|-|. ++++ +++|++||..+.+++||++++++|+++.+++++..
T Consensus 28 p~G~Ll~~d~~~~~I~~vS~n~~~lLG~~~eeLLGr~l~dLl~~~~ 73 (520)
T 2vea_A 28 PHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQ 73 (520)
T ss_dssp TTSEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC-
T ss_pred CCEEEEEEECCCCEEEEECCHHHHHHCCCHHHHCCCCHHHHCCHHH
T ss_conf 8807999998999899995549988693989982997789789788
No 45
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} SCOP: d.110.2.1 d.110.3.9
Probab=97.40 E-value=0.0001 Score=44.08 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=55.2
Q ss_pred CCCE--EEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9748--9965-986876036888642013331110012234433332222222222222222222222222222110134
Q T0523 13 PIGL--VLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFW 89 (120)
Q Consensus 13 p~gi--~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 89 (120)
|-|+ ++++ +++|++||...++++||++++++|+++.+++++.. ...+.+.+.. .........+..+..++|...|
T Consensus 41 ~~G~Ll~ld~~d~~I~~vS~N~~~llG~~peellG~~l~~ll~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T 2ool_A 41 PHGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAAS-AARLTHALHG-GDPAAINPIRLDVVTPDGERAF 118 (337)
T ss_dssp TTSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHH-HHHHHHHHCC-----CCCSEEEEEEETTEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHCCCCHHHHCCHHH-HHHHHHHHHC-CCCCCCCCEEEEEECCCCCCEE
T ss_conf 8707999988999799986619988396989983998889769888-9999998631-4745588689998416898226
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 3324567637998889999888401473
Q T0523 90 CHVTGRALDRTAPLAAGVWTFEDLSATR 117 (120)
Q Consensus 90 v~~~~~~i~~~~~~~~~v~~~~DITerk 117 (120)
..+ .-..++ +++..+++.++.+
T Consensus 119 ~~~---~hr~~~---~li~ele~~~~~~ 140 (337)
T 2ool_A 119 NGI---LHRHDS---IVILELEPRDESR 140 (337)
T ss_dssp EEE---EEEETT---EEEEEEECCCCCS
T ss_pred EEE---EEECCC---CEEEEEEECCCCC
T ss_conf 899---998488---1799855434441
No 46
>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} SCOP: d.110.2.1 d.110.3.9 PDB: 2o9b_A* 1ztu_A*
Probab=96.68 E-value=0.00059 Score=39.98 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=48.1
Q ss_pred EEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 89965-98687603688864201333111001223443333222222222222222222222222222211013433245
Q T0523 16 LVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTG 94 (120)
Q Consensus 16 i~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~ 94 (120)
++++. +++|++||..+.+++|+++++++|+++.++++.. ........... ..............+|..+|+.++.
T Consensus 57 l~ld~~d~~I~~vS~N~~~iLG~~peelLG~~l~~llpe~--~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ihr 132 (342)
T 2o9c_A 57 LTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQ--WPALQAALPPG--CPDALQYRATLDWPAAGHLSLTVHR 132 (342)
T ss_dssp EEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTTT--HHHHHHHSCTT--CCTTCCEEEEECCSSSSEEEEEEEE
T ss_pred EEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHH--HHHHHHHHHCC--CCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf 9998899949999288998859296998599889988846--89999876407--9864146788815887379999998
No 47
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl cyclase, transferase; 2.00A {Nostoc punctiforme pcc 73102} PDB: 2p04_A
Probab=68.30 E-value=5.8 Score=18.77 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEECCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 889987189748996598687603688864201333111001223443
Q T0523 5 YKTAFHLAPIGLVLSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYP 52 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~ 52 (120)
-++....-|--++++++++|..+.++..++++ +...|+.+.+.|.
T Consensus 4 ~~~f~~~FPfHl~~d~~~~I~~~G~~L~k~~p---~~~~G~~~~d~F~ 48 (115)
T 2p08_A 4 PELLAKAFPFHFAFSRNREIVQTGEVLERISP---EPLVGKLIEQHFQ 48 (115)
T ss_dssp HHHHHHHCTTCEEECTTCBEEEECHHHHHHCS---SCCTTSBGGGTEE
T ss_pred HHHHHHHCCEEEEECCCCEEEECCCHHHHHCC---CCCCCCCHHHEEE
T ss_conf 69998449989999999989982654987785---7657997789788
No 48
>3g6o_A Bacteriophytochrome; alpha/beta structure, PAS domain, chromophore, kinase, phosphoprotein, photoreceptor protein, receptor; HET: BLA; 2.85A {Pseudomonas aeruginosa} PDB: 3ibr_A* 3c2w_A*
Probab=26.40 E-value=26 Score=15.34 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCCE--EEECCCEEEEECHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9748--99659868760368886420133311100122
Q T0523 13 PIGL--VLSRDRVIEDCNDELAAIFRCARADLIGRSFE 48 (120)
Q Consensus 13 p~gi--~~~~~g~i~~~N~~~~~~~G~~~~el~g~~~~ 48 (120)
|-|+ +++.+++|+.|+.-..+++|++++.+.+....
T Consensus 25 phG~Ll~ld~~~~I~~vS~N~~~~lg~~~~~l~~~~~~ 62 (505)
T 3g6o_A 25 PHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQE 62 (505)
T ss_dssp TTEEEEEECTTCBEEEEETTHHHHSSCCCCTTCBCCHH
T ss_pred CCEEEEEEECCCCEEEEECCHHHHHCCCCCCCCCCCHH
T ss_conf 87289999079958999277998738985203564867
Done!