Query T0523 3MQO, Burkholderia thailandensis, 120 residues
Match_columns 120
No_of_seqs 112 out of 16486
Neff 10.1
Searched_HMMs 11830
Date Fri May 21 18:06:16 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0523.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0523.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08448 PAS_4: PAS fold; Int 99.7 4.1E-18 3.4E-22 113.8 4.8 108 9-118 1-110 (110)
2 PF00989 PAS: PAS fold; Inter 99.7 2.2E-17 1.9E-21 109.9 6.7 109 4-113 2-113 (113)
3 PF08447 PAS_3: PAS fold; Int 99.1 1.1E-11 9.2E-16 79.6 4.1 85 24-110 1-91 (91)
4 PF08670 MEKHLA: MEKHLA domain 97.7 2.9E-05 2.4E-09 45.5 5.8 108 3-112 32-144 (148)
5 PF08446 PAS_2: PAS fold; Int 92.4 0.029 2.5E-06 29.5 2.4 74 16-94 19-96 (108)
6 PF07310 PAS_5: PAS domain; I 90.3 0.2 1.7E-05 25.0 5.0 101 6-110 31-136 (137)
7 PF06785 UPF0242: Uncharacteri 84.2 0.031 2.6E-06 29.3 -2.1 95 2-102 282-382 (401)
8 PF08348 PAS_6: YheO-like PAS 39.3 9.9 0.00084 16.1 5.0 45 73-119 67-112 (118)
9 PF09547 Spore_IV_A: Stage IV 11.2 34 0.0029 13.2 1.1 46 7-52 140-188 (492)
10 PF01731 Arylesterase: Arylest 8.4 38 0.0032 12.9 0.5 14 79-92 59-72 (86)
No 1
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3fc7_A 3fg8_F 2r78_D 3bwl_D.
Probab=99.70 E-value=4.1e-18 Score=113.80 Aligned_cols=108 Identities=19% Similarity=0.323 Sum_probs=89.9
Q ss_pred HHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 871897489965-9868760368886420133311100122344333322222222222222222222222222221101
Q T0523 9 FHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGEL 87 (120)
Q Consensus 9 ~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 87 (120)
|+++|+++++.+ +|+|+++|+++++++|++.++++|+++.+++++. ....+...+...+..+.....+..+.. +|+.
T Consensus 1 l~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 78 (110)
T PF08448_consen 1 LDNIPDGIFILDPDGRIIYANRAFEDLFGYSPEELLGKPLWELFPPE-DREDFQAALRQALEGGKPVQFEEEIHR-DGEE 78 (110)
T ss_dssp HHHSSSEEEEEETT-BEEEE-HHHHHHHT--HHHHTT-BGGGTSCCH-HHHHHHHHHHHHHHT-EEEEEEEEESS----E
T ss_pred CCCCCHHHEEECCCCEEEEEHHHHHHHHCCCHHHHCCCCHHHHCCCH-HHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCC
T ss_conf 99987152899898959977699998859298998599447847710-002368899998646980899999952-7871
Q ss_pred EEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHH
Q ss_conf 3433245676-379988899998884014733
Q T0523 88 FWCHVTGRAL-DRTAPLAAGVWTFEDLSATRR 118 (120)
Q Consensus 88 ~~v~~~~~~i-~~~~~~~~~v~~~~DITerkr 118 (120)
+|+.++..|+ +.+|...+++++++|||++||
T Consensus 79 ~~~~~~~~p~~d~~g~~~~~i~~~~DiTe~kr 110 (110)
T PF08448_consen 79 RWFEVTLSPVRDEDGEVQGVIVIARDITERKR 110 (110)
T ss_dssp EEEEEEEEEC-CTTTTTCEEEEEEEEETT---
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 99999999968799989799999997874319
No 2
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1ll8_A 1wa9_B 3gec_A 1v9z_B 1s67_U 1vb6_A 1s66_L 1v9y_B 3b33_A 2w0n_A ....
Probab=99.68 E-value=2.2e-17 Score=109.86 Aligned_cols=109 Identities=18% Similarity=0.348 Sum_probs=87.7
Q ss_pred HHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 68899871897489965-986876036888642013331110012234433332222222222222222222-2222222
Q T0523 4 DYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSY-ADDRIMK 81 (120)
Q Consensus 4 ~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~ 81 (120)
+|+++++++|.|+++.+ +|+|+++|+++++|+||++++++|+++.+++++.+.. .....+...+..++.. ..+..+.
T Consensus 2 ~~~~ii~~~~~~i~v~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T PF00989_consen 2 RFRAIIESSPDGIFVVDADGRILYVNSAAEELFGYSPEELIGKSIFDLFHPDDRE-EFRDQLSQLLQQGESSESFEVRFN 80 (113)
T ss_dssp HHHHHHHTTSSEEEEEETTSBEEEETHHHHHHCTS-HHHHTTSBGGGGCSTTTHH-HHHHHHHHHHHHTC-BEEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCHHHH-HHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 7899977384429999595989999889999879595884799699945852366-799999999983898346899999
Q ss_pred CCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEH
Q ss_conf 2211013433245676-3799888999988840
Q T0523 82 RAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDL 113 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DI 113 (120)
.++|+.+|+.++++|+ +.+|...+++++++||
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 81 LRDGSIIWIEVSASPIRDEDGEIIGIIGIFRDI 113 (113)
T ss_dssp ESTSCEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ECCCCEEEEEEEEEEEEECCCCEEEEEEEEECC
T ss_conf 449969999999999991999999999999919
No 3
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL , FAD in the redox potential sensor NifL , and a 4-hydroxycinnamyl chromophore in photoactive yellow protein . Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses . ; PDB: 3h9w_A 3eeh_A 2vlg_C 1g28_C 1jnu_D 1n9n_A 1n9l_A 1n9o_A 2a24_A 3f1o_A ....
Probab=99.14 E-value=1.1e-11 Score=79.64 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=70.9
Q ss_pred EEEECHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-
Q ss_conf 87603688864201333111001----22344333322222222222-2222222222222222211013433245676-
Q T0523 24 IEDCNDELAAIFRCARADLIGRS----FEVLYPSSDEFERIGERISP-VMIAHGSYADDRIMKRAGGELFWCHVTGRAL- 97 (120)
Q Consensus 24 i~~~N~~~~~~~G~~~~el~g~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i- 97 (120)
|+++|+.+++++||+++++ +.. +..+. ++++...+.+.+.. ....+..++.|++++++||+.+|+..++.++
T Consensus 1 ~~~~s~~~~~i~Gy~~~e~-~~~~~~~~~~~i-hpeD~~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~wv~~~~~~~~ 78 (91)
T PF08447_consen 1 IVYVSDAFYEILGYSPEEL-GKSSPDTWFDLI-HPEDRERVRQAIERASLRNGEPFSFEYRIRTKDGSYRWVHSRGRPIR 78 (91)
T ss_dssp EEEE-THHHHHHT--HHHH-TCB-HHHGGGGB-GHHHHHHHHHHHHHHHHHCTTCEEEEEEEEGTTSTEEEEEEEEEEEE
T ss_pred CEEEEHHHHHHHCCCHHHH-CCCCHHHHHHEE-CCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf 9998079999879998998-467777897627-91249999999875430345523599999979998999999999999
Q ss_pred CCCCCEEEEEEEE
Q ss_conf 3799888999988
Q T0523 98 DRTAPLAAGVWTF 110 (120)
Q Consensus 98 ~~~~~~~~~v~~~ 110 (120)
+.+|.+.+++++.
T Consensus 79 d~~g~~~~~~G~~ 91 (91)
T PF08447_consen 79 DENGKPVRLVGVN 91 (91)
T ss_dssp TTTTCEEEEEEEE
T ss_pred CCCCCEEEEEEEC
T ss_conf 9999999999989
No 4
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=97.69 E-value=2.9e-05 Score=45.49 Aligned_cols=108 Identities=16% Similarity=0.094 Sum_probs=77.4
Q ss_pred HHHHHHHHHCCCCEEEEC---CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268899871897489965---98687603688864201333111001223443333222222222222222222222222
Q T0523 3 IDYKTAFHLAPIGLVLSR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
Q Consensus 3 ~~~~~i~e~~p~gi~~~~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
.-++.+++ +|.+|+--+ +=.++|+|++.++|++++-+++.+.+...... +..+......+....+.|-....--.
T Consensus 32 ~~~~~L~~-~p~ail~h~~~~dPvf~yaN~aaL~m~E~tw~~l~~lpsr~tae-~~~r~~r~~~l~~v~~qG~~~~y~GI 109 (148)
T PF08670_consen 32 ELAKALWH-APFAILCHSTKADPVFIYANQAALDMWETTWDELQDLPSRKTAE-EPERKERQSLLDQVMQQGYACLYSGI 109 (148)
T ss_pred HHHHHHHC-CCCEEEECCCCCCCEEEECCHHHHHHHCCCHHHHHCCCHHHCCC-HHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999971-99779984788897687610899999718899984697765169-35089999889999981850078857
Q ss_pred CCCCCCCEEEEEEEE-EE-ECCCCCEEEEEEEEEE
Q ss_conf 222211013433245-67-6379988899998884
Q T0523 80 MKRAGGELFWCHVTG-RA-LDRTAPLAAGVWTFED 112 (120)
Q Consensus 80 ~~~~dG~~~~v~~~~-~~-i~~~~~~~~~v~~~~D 112 (120)
.+.+.|+.++++-.. -. ++++|...|.-..|.+
T Consensus 110 Riss~Grrf~ie~A~~W~v~d~~g~~~gqAa~F~n 144 (148)
T PF08670_consen 110 RISSMGRRFSIEQAVAWKVLDEDGNYHGQAAMFSN 144 (148)
T ss_pred EECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 88289976898026998788578888999999611
No 5
>PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. ; GO: 0008020 G-protein coupled photoreceptor activity, 0007600 sensory perception, 0018298 protein-chromophore linkage, 0045449 regulation of transcription; PDB: 1ztu_A 2o9b_A 2o9c_A 2ool_A 2vea_A 3c2w_F.
Probab=92.36 E-value=0.029 Score=29.50 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEEC-CCEEEEECHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCEEEEE
Q ss_conf 89965-986876036888642013-331110012234433332222222222222222222-222222-22211013433
Q T0523 16 LVLSR-DRVIEDCNDELAAIFRCA-RADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSY-ADDRIM-KRAGGELFWCH 91 (120)
Q Consensus 16 i~~~~-~g~i~~~N~~~~~~~G~~-~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~-~~~dG~~~~v~ 91 (120)
++++. +++|+.++.-..+++|.+ .++++|+++.+++.... ...+... +.....- .....+ .+.+|+.+++.
T Consensus 19 La~d~~~~~I~~~SeN~~~~lg~~~~~~llG~~l~~ll~~~~-~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~ 93 (108)
T PF08446_consen 19 LALDPPDLRIIQASENIADLLGIPPPEDLLGRPLSDLLSPES-AHRLREA----LQSESISDSNPIRIRLRIGGRPFDAI 93 (108)
T ss_dssp EEEETTTTEEEEEETTHHHHHSS--HCCHTT-CHHHHSCCCC-HHHHHHH----C----HCCHCCEEEEEES-EEEEEEE
T ss_pred EEEECCCCEEEEECCCHHHHHCCCCHHHHCCCCHHHHHCHHH-HHHHHHH----HHCCCCCCCCCEEEEECCCCEEEEEE
T ss_conf 999878988999866989985873206451898999859778-9999986----50378443586899952577359999
Q ss_pred EEE
Q ss_conf 245
Q T0523 92 VTG 94 (120)
Q Consensus 92 ~~~ 94 (120)
++.
T Consensus 94 ~H~ 96 (108)
T PF08446_consen 94 IHR 96 (108)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 6
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=90.29 E-value=0.2 Score=25.02 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=71.0
Q ss_pred HHHHHHCCCCEEE--ECCC--EEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8998718974899--6598--68760368886420133311100122344333322222222222222222222222222
Q T0523 6 KTAFHLAPIGLVL--SRDR--VIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
Q Consensus 6 ~~i~e~~p~gi~~--~~~g--~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
..|-...|...++ .+++ ++..+-...++++|+ ++.|+.+.+++.+.. .....+.+........+........
T Consensus 31 ~~i~~lLp~i~ile~~~~~~~r~RLaGt~i~~~~G~---d~tG~~~~~l~~~~~-~~~~~~~~~~v~~~~~p~~~~~~~~ 106 (137)
T PF07310_consen 31 AEIPRLLPHIFILEVEDPGRFRYRLAGTRIVELFGR---DLTGRRLDELFAPED-RERVFRALRAVVDEPCPVRARGRAR 106 (137)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEECHHHHHHHCC---CCCCCCHHHHCCHHH-HHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 899987196299998289957999966899998199---888989778418166-9999999999981895299997872
Q ss_pred CCCCCEEEEEEEEEEE-CCCCCEEEEEEEE
Q ss_conf 2211013433245676-3799888999988
Q T0523 82 RAGGELFWCHVTGRAL-DRTAPLAAGVWTF 110 (120)
Q Consensus 82 ~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~ 110 (120)
..+|.....+...-|+ +++|.+..+++.+
T Consensus 107 ~~~~~~~~~e~l~LPL~~~~g~v~~ilG~l 136 (137)
T PF07310_consen 107 TEDGRYLRFERLLLPLRDDDGEVDRILGAL 136 (137)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 489983355689723588999806797723
No 7
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.15 E-value=0.031 Score=29.34 Aligned_cols=95 Identities=8% Similarity=0.112 Sum_probs=61.0
Q ss_pred CHHHHHHHHHC---CCCE-EE-EC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42688998718---9748-99-65-9868760368886420133311100122344333322222222222222222222
Q T0523 2 AIDYKTAFHLA---PIGL-VL-SR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYA 75 (120)
Q Consensus 2 ~~~~~~i~e~~---p~gi-~~-~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (120)
+++-|.+|++. ..|| ++ .. +.+.+++|.-|-..+||..++++...-....-.-.. ..+.+... .....+
T Consensus 282 slecRqLFDnLreEnlGmlfVya~qsQr~vFAN~lfKtwtGy~~edfl~~~~diV~sGl~q---W~~dL~~~--~r~E~s 356 (401)
T PF06785_consen 282 SLECRQLFDNLREENLGMLFVYAPQSQRAVFANSLFKTWTGYGAEDFLSDFSDIVISGLNQ---WERDLRLL--DRAERS 356 (401)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHH---HHHHHHHH--HHHHHC
T ss_conf 3899999755545128669997510378998788888875246999873122889851889---98888875--468654
Q ss_pred CCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 222222221101343324567637998
Q T0523 76 DDRIMKRAGGELFWCHVTGRALDRTAP 102 (120)
Q Consensus 76 ~e~~~~~~dG~~~~v~~~~~~i~~~~~ 102 (120)
+-+...+|+|..++.......+ +.|.
T Consensus 357 gkiiiKtKn~g~ipf~ycL~il-~kGp 382 (401)
T PF06785_consen 357 GKIIIKTKNHGQIPFYYCLTIL-NKGP 382 (401)
T ss_pred CEEEEECCCCCCCEEEEEEEEE-CCCC
T ss_conf 7278871678842058889850-6752
No 8
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=39.35 E-value=9.9 Score=16.05 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEHHHHHHC
Q ss_conf 2222222222211013433245676-3799888999988840147331
Q T0523 73 SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
Q Consensus 73 ~~~~e~~~~~~dG~~~~v~~~~~~i-~~~~~~~~~v~~~~DITerkra 119 (120)
.+...+.-+.+||+.. +.+..++ +.+|.+.|++.+=.|+|.-.++
T Consensus 67 ~~~~~Y~~~~~dGr~l--kSsT~~ird~~g~~iG~LCIN~D~s~~~~~ 112 (118)
T PF08348_consen 67 DDIVNYKTRTKDGRTL--KSSTIFIRDENGKPIGALCINFDISALEQA 112 (118)
T ss_pred CCCCCEEEECCCCCEE--EEEEEEEECCCCCEEEEEEEEECCHHHHHH
T ss_conf 6144605678999898--999999999999999999997576789999
No 9
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A)
Probab=11.23 E-value=34 Score=13.21 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=25.3
Q ss_pred HHHHHCCCCEEEECCCEEEEECHHHHH-HHHCCCCCC--CCCCCCCCCC
Q ss_conf 998718974899659868760368886-420133311--1001223443
Q T0523 7 TAFHLAPIGLVLSRDRVIEDCNDELAA-IFRCARADL--IGRSFEVLYP 52 (120)
Q Consensus 7 ~i~e~~p~gi~~~~~g~i~~~N~~~~~-~~G~~~~el--~g~~~~~~~~ 52 (120)
.|-+|+.+|++++.||.|..+.+.-.. .-..--+|| +|++|-.++.
T Consensus 140 VI~dHSTIGiVVTTDGSitdIpRe~Y~eAEervI~ELk~igKPFvillN 188 (492)
T PF09547_consen 140 VIQDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLN 188 (492)
T ss_pred EECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 3205770449995688745666566667899999999862999899982
No 10
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity . Mammals have 3 distinct paraoxonase types, termed PON1-3 , . In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophilic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) . Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo . This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity . Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation .; GO: 0004064 arylesterase activity; PDB: 1v04_A.
Probab=8.45 E-value=38 Score=12.94 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=7.4
Q ss_pred CCCCCCCCEEEEEE
Q ss_conf 22222110134332
Q T0523 79 IMKRAGGELFWCHV 92 (120)
Q Consensus 79 ~~~~~dG~~~~v~~ 92 (120)
....+||+.+++.-
T Consensus 59 I~~s~d~k~vyVa~ 72 (86)
T PF01731_consen 59 INISPDGKYVYVAS 72 (86)
T ss_dssp -EE-----EEEEEE
T ss_pred EEECCCCCEEEEEC
T ss_conf 58889988999941
Done!