Query T0523 3MQO, Burkholderia thailandensis, 120 residues
Match_columns 120
No_of_seqs 112 out of 16486
Neff 10.1
Searched_HMMs 15564
Date Fri May 21 18:04:07 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0523.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0523.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n9la_ d.110.3.6 (A:) Putativ 99.8 7E-20 4.5E-24 123.8 6.5 102 13-115 3-109 (109)
2 d1ew0a_ d.110.3.2 (A:) Histidi 99.8 2.9E-19 1.8E-23 120.6 7.0 111 2-114 15-130 (130)
3 d1bywa_ d.110.3.6 (A:) Erg pot 99.8 3.6E-19 2.3E-23 120.1 6.3 97 20-116 12-110 (110)
4 d1v9ya_ d.110.3.2 (A:) Direct 99.7 1.4E-17 9.2E-22 111.5 8.8 107 5-112 3-113 (113)
5 d1p97a_ d.110.3.7 (A:) Hypoxia 99.7 1.3E-18 8.1E-23 117.1 2.9 99 19-118 13-113 (114)
6 d1jnua_ d.110.3.6 (A:) Photore 99.7 1.4E-17 8.7E-22 111.7 5.4 93 20-113 11-104 (104)
7 d1xj3a1 d.110.3.2 (A:154-259) 99.6 1.4E-16 8.9E-21 106.3 6.4 101 14-116 1-106 (106)
8 d1nwza_ d.110.3.1 (A:) Photoac 99.6 1.2E-15 7.6E-20 101.3 6.6 106 5-113 19-125 (125)
9 d1ll8a_ d.110.3.5 (A:) N-termi 99.5 6.3E-15 4.1E-19 97.5 6.9 103 10-114 5-113 (114)
10 d1mzua_ d.110.3.1 (A:) PYP dom 99.5 2.9E-15 1.8E-19 99.3 5.0 96 5-101 5-102 (110)
11 d1nwza_ d.110.3.1 (A:) Photoac 99.5 4.2E-14 2.7E-18 93.1 7.1 104 6-113 20-125 (125)
12 d1oj5a_ d.110.3.8 (A:) PAS dom 99.2 2.1E-12 1.4E-16 84.0 2.1 91 19-109 9-103 (109)
13 d2oola2 d.110.3.9 (A:26-139) S 97.1 0.00014 9E-09 42.5 3.0 79 13-93 16-98 (114)
14 d2veaa3 d.110.3.9 (A:4-130) Ph 96.2 0.0027 1.8E-07 35.6 4.0 80 13-93 25-108 (127)
15 d2o9ca2 d.110.3.9 (A:4-130) Ba 93.9 0.016 1E-06 31.6 2.4 78 13-94 34-114 (127)
16 d3c2wa3 d.110.3.9 (A:5-117) Ba 67.7 1.6 0.0001 21.0 2.2 75 13-94 21-97 (113)
No 1
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.79 E-value=7e-20 Score=123.82 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=86.3
Q ss_pred CCCEEEEC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 97489965----98687603688864201333111001223443333222222222222222222222222222211013
Q T0523 13 PIGLVLSR----DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELF 88 (120)
Q Consensus 13 p~gi~~~~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 88 (120)
..++++.+ ||+|++||++|++|+||+++|++|+++..++++ +........+...+..++.++.|+.+++|||+.+
T Consensus 3 ~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~ 81 (109)
T d1n9la_ 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGE-GTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCT-TCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCEEE
T ss_conf 656999959899896999958999988869999858730031135-5787784223457653985031278870688399
Q ss_pred EEEEEEEEE-CCCCCEEEEEEEEEEHHH
Q ss_conf 433245676-379988899998884014
Q T0523 89 WCHVTGRAL-DRTAPLAAGVWTFEDLSA 115 (120)
Q Consensus 89 ~v~~~~~~i-~~~~~~~~~v~~~~DITe 115 (120)
|+.++++|+ +.+|.+.+++++++|||.
T Consensus 82 w~~~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 82 WNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 9998998899999999999999997799
No 2
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.77 E-value=2.9e-19 Score=120.56 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=85.8
Q ss_pred CHHHHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCC
Q ss_conf 4268899871897489965-986876036888642013331110012234433332222222222222222----22222
Q T0523 2 AIDYKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAH----GSYAD 76 (120)
Q Consensus 2 ~~~~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 76 (120)
+..|+++|+++|+||++.+ +|+|+++|+++++|+||++++++|+++..+++.... ......+...+..+ .....
T Consensus 15 e~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T d1ew0a_ 15 DAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYR-HEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp TSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTG-GGHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999719772999908964998788877751699889628752233331026-77889999999718875444101
Q ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 22222221101343324567637998889999888401
Q T0523 77 DRIMKRAGGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 77 e~~~~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
|+.++++||+.+|+.++.+++..++ ...++++++|||
T Consensus 94 e~~~~~~dG~~~~v~~~~~~i~~~~-~~~~~~i~rDIT 130 (130)
T d1ew0a_ 94 VVSGQRKDGSTFPMKLAVGEMRSGG-ERFFTGFIRDLT 130 (130)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEECC-EEEEEEEEEECC
T ss_conf 5889858997999999999999799-389999999787
No 3
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.76 E-value=3.6e-19 Score=120.05 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=83.5
Q ss_pred CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-
Q ss_conf 59868760368886420133311100122344-3333222222222222222222222222222211013433245676-
Q T0523 20 RDRVIEDCNDELAAIFRCARADLIGRSFEVLY-PSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL- 97 (120)
Q Consensus 20 ~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i- 97 (120)
.|++|+|+|++|++|+||+.+|++|+++...+ .+++........+...+..+.+++.|.++++++|+.+|+.++++|+
T Consensus 12 ~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w~~~~~~pi~ 91 (110)
T d1bywa_ 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVK 91 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCEEEEECHHHHHHHCCCHHHHCCCCCCCCCCEEEHEECCCCCCCCHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEE
T ss_conf 99989999489999859988895336743112101000000000100000012111110002201322011233677899
Q ss_pred CCCCCEEEEEEEEEEHHHH
Q ss_conf 3799888999988840147
Q T0523 98 DRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 98 ~~~~~~~~~v~~~~DITer 116 (120)
+.+|.+.+++++++|||||
T Consensus 92 d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 92 NEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEECCCC
T ss_conf 8999999999999978899
No 4
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.71 E-value=1.4e-17 Score=111.54 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=82.6
Q ss_pred HHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899871897489965-986876036888642013331110012234433332222---222222222222222222222
Q T0523 5 YKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFER---IGERISPVMIAHGSYADDRIM 80 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~~~ 80 (120)
|+++||++++||++.+ +|+|+++|+++++++||+++|++|++...+++....... .................|..+
T Consensus 3 ~~~~~e~~~d~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 82 (113)
T d1v9ya_ 3 FFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQL 82 (113)
T ss_dssp HHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEEEE
T ss_pred HHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89998708471899929999999861686652013666537520003321111110000011001243200110002441
Q ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 22211013433245676379988899998884
Q T0523 81 KRAGGELFWCHVTGRALDRTAPLAAGVWTFED 112 (120)
Q Consensus 81 ~~~dG~~~~v~~~~~~i~~~~~~~~~v~~~~D 112 (120)
++|||+.+|+.++++|+..+++ ..++++++|
T Consensus 83 ~~~dG~~~~v~~~~~~i~~~~~-~~~~~v~rD 113 (113)
T d1v9ya_ 83 EKKDGSKIWTRFALSKVSAEGK-VYYLALVRD 113 (113)
T ss_dssp ECTTSCEEEEEEEEEEEEETTE-EEEEEEEEC
T ss_pred CCCCCEEEEEEEEEEEEEECCE-EEEEEEEEC
T ss_conf 0245416999999999998990-899999999
No 5
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=1.3e-18 Score=117.15 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=84.9
Q ss_pred ECCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-
Q ss_conf 6598687603688864201333111001223443333222222222222222222222222222211013433245676-
Q T0523 19 SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL- 97 (120)
Q Consensus 19 ~~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i- 97 (120)
+.+|+|+++|+++++++||++++++|+++.++++++ +...+.+........+..+..|+++++|||+.+|++++++|+
T Consensus 13 ~~dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~e-d~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv~~~~~~~~ 91 (114)
T d1p97a_ 13 SMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHAL-DSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIY 91 (114)
T ss_dssp CTTTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSS-SHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEECCCCCCEEECCEEEEEECCCCEEEEEEEEEEE
T ss_conf 799959999879997749971305520000000001-2431100100001111100011000000476517999988999
Q ss_pred CC-CCCEEEEEEEEEEHHHHHH
Q ss_conf 37-9988899998884014733
Q T0523 98 DR-TAPLAAGVWTFEDLSATRR 118 (120)
Q Consensus 98 ~~-~~~~~~~v~~~~DITerkr 118 (120)
+. ++.+.+++++.+||||+||
T Consensus 92 ~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 92 NPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp CTTTCSEEEEEEEEEEEEEEEC
T ss_pred ECCCCCEEEEEEEEEECCHHHC
T ss_conf 6899989999999998972423
No 6
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.68 E-value=1.4e-17 Score=111.66 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=82.3
Q ss_pred CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-C
Q ss_conf 598687603688864201333111001223443333222222222222222222222222222211013433245676-3
Q T0523 20 RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL-D 98 (120)
Q Consensus 20 ~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i-~ 98 (120)
+||+|+|+|++|++++||+.+|++|+++.+++++. ........+...+..+..+++|++++++||+.+|+.+++.|+ +
T Consensus 11 pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~pi~d 89 (104)
T d1jnua_ 11 PDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRG-TDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRD 89 (104)
T ss_dssp TTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTT-SCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEECT
T ss_pred CCCEEEEECHHHHHHHCCCHHHHCCCCCEECCCCC-CCHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEEEEC
T ss_conf 98989999689999888698997786210010110-01677764235652596357689999605542898878888999
Q ss_pred CCCCEEEEEEEEEEH
Q ss_conf 799888999988840
Q T0523 99 RTAPLAAGVWTFEDL 113 (120)
Q Consensus 99 ~~~~~~~~v~~~~DI 113 (120)
.+|.+.+++++++||
T Consensus 90 ~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 90 ENGDVQYFIGVQQEM 104 (104)
T ss_dssp TTSSCCEEEEEEEEC
T ss_pred CCCCEEEEEEEEECC
T ss_conf 999999999999829
No 7
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.64 E-value=1.4e-16 Score=106.28 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 7489965-9868760368886420133311100122344333322222222222----2222222222222222211013
Q T0523 14 IGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISP----VMIAHGSYADDRIMKRAGGELF 88 (120)
Q Consensus 14 ~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~~~~~~dG~~~ 88 (120)
+||++.+ +|+|+++|+++++|+||+.+|++|+++..++++...... ...... ..........|+.+++|||+.+
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 79 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRH-DSYISRYRTTSDPHIIGIGRIVTGKRRDGTTF 79 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHH-HHHHHHHHHHCCCSSTTTCEEEEEECTTSCEE
T ss_pred CEEEEECCCCCEEEECHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCEEEEEECCCEEE
T ss_conf 98999979993997738999876434186618974224221210001-12223444302321111110001330143699
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 4332456763799888999988840147
Q T0523 89 WCHVTGRALDRTAPLAAGVWTFEDLSAT 116 (120)
Q Consensus 89 ~v~~~~~~i~~~~~~~~~v~~~~DITer 116 (120)
|+.++++|+..++ ..+++++++||||.
T Consensus 80 ~v~~~~~~~~~~~-~~~~~~~~~DITE~ 106 (106)
T d1xj3a1 80 PMHLSIGEMQSGG-EPYFTGFVRDLTEH 106 (106)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEECHHH
T ss_pred EEEEEEEEEEECC-EEEEEEEEEECCCC
T ss_conf 8889999999799-37999999968898
No 8
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.58 E-value=1.2e-15 Score=101.35 Aligned_cols=106 Identities=8% Similarity=-0.090 Sum_probs=84.2
Q ss_pred HHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899871897489965-986876036888642013331110012234433332222222222222222222222222222
Q T0523 5 YKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRA 83 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (120)
++++++++|.|+++.+ +|+|+++|+++++++||++++++|+++.+++.+++....+...+...+..+.....+...+++
T Consensus 19 ~d~~ld~~p~gi~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 98 (125)
T d1nwza_ 19 DDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDY 98 (125)
T ss_dssp CHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECT
T ss_pred HHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHEEEECEEEEECCCCCEEEEEEECC
T ss_conf 99998578752999908998999817999762456276639977772695666100200000021047754588887403
Q ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 110134332456763799888999988840
Q T0523 84 GGELFWCHVTGRALDRTAPLAAGVWTFEDL 113 (120)
Q Consensus 84 dG~~~~v~~~~~~i~~~~~~~~~v~~~~DI 113 (120)
+|+.+|+.++..+... |+ .+...++||
T Consensus 99 ~G~~~~v~v~l~~~~~-g~--~~~v~V~di 125 (125)
T d1nwza_ 99 QMTPTKVKVHMKKALS-GD--SYWVFVKRV 125 (125)
T ss_dssp TSCCEEEEEEEEECSS-SS--EEEEEEEEC
T ss_pred CCCEEEEEEEEEEECC-CC--EEEEEEEEC
T ss_conf 7947999999999469-99--899999989
No 9
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=6.3e-15 Score=97.46 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=77.8
Q ss_pred HHCCCCEEEEC--CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCC
Q ss_conf 71897489965--9868760368886420133311100122344333322222222222222222----22222222222
Q T0523 10 HLAPIGLVLSR--DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHG----SYADDRIMKRA 83 (120)
Q Consensus 10 e~~p~gi~~~~--~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~ 83 (120)
+.+..+|++.+ +|+|+++|++++++|||++++++|+++.+++++.+. ......+......+. .+..|+.++++
T Consensus 5 ~~~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (114)
T d1ll8a_ 5 PEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDS-DVVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTT-HHHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred HHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCEEEECCCCCH-HHHHHHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 1009689999999999999778999754689789839972214281049-999999999985677731003678888804
Q ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 1101343324567637998889999888401
Q T0523 84 GGELFWCHVTGRALDRTAPLAAGVWTFEDLS 114 (120)
Q Consensus 84 dG~~~~v~~~~~~i~~~~~~~~~v~~~~DIT 114 (120)
||+.+|++++++++..+|+. .++++++||+
T Consensus 84 ~G~~~pvevs~~~i~~~~~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 84 SGEKIPVSVWMKRMRQERRL-CCVVVLEPVE 113 (114)
T ss_dssp TCCCEEEECCEECCBSSSSB-EEEEEEEECC
T ss_pred CCCEEEEEEEEEEEEECCEE-EEEEEEEECC
T ss_conf 99199999999999999967-9999999775
No 10
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.53 E-value=2.9e-15 Score=99.28 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=75.6
Q ss_pred HHHHHHHCCCCEEEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 8899871897489965-9868760368886420133311100122344333322222222222222222222-2222222
Q T0523 5 YKTAFHLAPIGLVLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYA-DDRIMKR 82 (120)
Q Consensus 5 ~~~i~e~~p~gi~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~ 82 (120)
++++++++|.||++.| +|+|+++|+++++|+||+++|++|+++.+.+.++...+.+...+.+....+.... .++. .+
T Consensus 5 ~~A~ld~~p~gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~ 83 (110)
T d1mzua_ 5 GTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV-FD 83 (110)
T ss_dssp -CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE-EE
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE-EE
T ss_conf 79998478937999969999998577899988679999859978996498646689999999998655657413799-93
Q ss_pred CCCCEEEEEEEEEEECCCC
Q ss_conf 2110134332456763799
Q T0523 83 AGGELFWCHVTGRALDRTA 101 (120)
Q Consensus 83 ~dG~~~~v~~~~~~i~~~~ 101 (120)
++|+.++++++..+...++
T Consensus 84 ~~G~~~~v~v~~~~~~~~~ 102 (110)
T d1mzua_ 84 FQMAPVRVQIRMQNAGVPD 102 (110)
T ss_dssp CSSCEEEEEEEEEECSSTT
T ss_pred CCCCEEEEEEEEEEECCCC
T ss_conf 0796389999999934799
No 11
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} SCOP: d1ot6a_ d1f98a_ d1f9ia_ d2d01a1 d1koua_ d1ugua_ d1gsva_ d1gswa_ d1gsxa_ d1odva_ d1otda_ d1mzub_ d1mzua_
Probab=99.47 E-value=4.2e-14 Score=93.09 Aligned_cols=104 Identities=10% Similarity=-0.035 Sum_probs=75.0
Q ss_pred HHHHHHCCCCEEE-ECCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 8998718974899-65986876036888642013331110012234433332222222222222222222-222222222
Q T0523 6 KTAFHLAPIGLVL-SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSY-ADDRIMKRA 83 (120)
Q Consensus 6 ~~i~e~~p~gi~~-~~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ 83 (120)
+++|+++|+||+. +.+|+|+++|+++++++||++++++|+++...+.+....+.+...+......+... ..|+. .++
T Consensus 20 ~~~ld~~p~gii~lD~dGri~~~N~a~~~l~G~~~ee~iGk~~~~~~~P~~~~~~~~~~~~~~~~~G~~~~~~e~~-~~~ 98 (125)
T d1nwza_ 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT-FDY 98 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE-ECT
T ss_pred HHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE-ECC
T ss_conf 9998627812687879986898755899864258257606641241187335689999999999729821468788-736
Q ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 110134332456763799888999988840
Q T0523 84 GGELFWCHVTGRALDRTAPLAAGVWTFEDL 113 (120)
Q Consensus 84 dG~~~~v~~~~~~i~~~~~~~~~v~~~~DI 113 (120)
+|..+|++++..+. .+|. ..++ .+++|
T Consensus 99 ~g~~~~V~v~l~~~-~dg~-~~~v-~v~~~ 125 (125)
T d1nwza_ 99 QMTPTKVKVHMKKA-LSGD-SYWV-FVKRV 125 (125)
T ss_dssp TSCCEEEEEEEEEC-SSSS-EEEE-EEEEC
T ss_pred CCCEEEEEEEEEEC-CCCC-EEEE-EEEEC
T ss_conf 99237899999973-8998-4799-97739
No 12
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.20 E-value=2.1e-12 Score=84.02 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=69.7
Q ss_pred ECCCEEEEECHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 659868760368886420133-31110012234433332222222-2222222222222222222221101343324567
Q T0523 19 SRDRVIEDCNDELAAIFRCAR-ADLIGRSFEVLYPSSDEFERIGE-RISPVMIAHGSYADDRIMKRAGGELFWCHVTGRA 96 (120)
Q Consensus 19 ~~~g~i~~~N~~~~~~~G~~~-~el~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~ 96 (120)
+-+|+++++|++..+++||.+ +|++|+++.+++++++......+ ........+.....+.++++|||+++|++.++++
T Consensus 9 ~~~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv~t~~~~ 88 (109)
T d1oj5a_ 9 DTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKL 88 (109)
T ss_dssp CTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEECHHHHHHHHCCCHHHHCCCCHHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 79962999987896675337878985975988498013327776678998873022230556440236838999999999
Q ss_pred E-CCCCCE-EEEEEE
Q ss_conf 6-379988-899998
Q T0523 97 L-DRTAPL-AAGVWT 109 (120)
Q Consensus 97 i-~~~~~~-~~~v~~ 109 (120)
+ +..++. ..++++
T Consensus 89 ~~~~~~~~~~~Ii~~ 103 (109)
T d1oj5a_ 89 CYPQSPDMQPFIMGI 103 (109)
T ss_dssp ECC----CCCEEEEE
T ss_pred EECCCCCCCCEEEEE
T ss_conf 999999963589999
No 13
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=97.13 E-value=0.00014 Score=42.46 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=47.8
Q ss_pred CCCE--EEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEE
Q ss_conf 9748--9965-986876036888642013331110012234433332222222222222222222222222222-11013
Q T0523 13 PIGL--VLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRA-GGELF 88 (120)
Q Consensus 13 p~gi--~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-dG~~~ 88 (120)
|-|+ +++. +++|+++++...+++|+++++++|+++.+++.+. +...+.+.+.... ..........+..+ +|..+
T Consensus 16 phG~Llvld~~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~-~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (114)
T d2oola2 16 PHGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAA-SAARLTHALHGGD-PAAINPIRLDVVTPDGERAF 93 (114)
T ss_dssp TTSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHH-HHHHHHHHHCC-----CCCSEEEEEEETTEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHH-HHHHHHHHHHCCC-CCCCCCEEEEEECCCCCEEE
T ss_conf 881899998899989999488899848892887599889968998-9999999874279-44478789997527998689
Q ss_pred EEEEE
Q ss_conf 43324
Q T0523 89 WCHVT 93 (120)
Q Consensus 89 ~v~~~ 93 (120)
++.++
T Consensus 94 ~~~~H 98 (114)
T d2oola2 94 NGILH 98 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
No 14
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=96.16 E-value=0.0027 Score=35.61 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCCE--EEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9748--9965-98687603688864201333111001223443333222222222222-222222222222222211013
Q T0523 13 PIGL--VLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPV-MIAHGSYADDRIMKRAGGELF 88 (120)
Q Consensus 13 p~gi--~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~dG~~~ 88 (120)
|-|+ ++++ +++|..++.-..+++|+++++++|+++.+++.... ...+...+... .....+.....+....++..+
T Consensus 25 phG~LLald~~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~-~~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~f 103 (127)
T d2veaa3 25 PHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQ-IDPIQSRLTAGQISSLNPSKLWARVMGDDFVIF 103 (127)
T ss_dssp TTSEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC---------CCCTTHHHHSSEEEEEECC--CEEEE
T ss_pred CCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHHH-HHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEE
T ss_conf 8868999988999899985798988485969983999889879899-999999864267555797799987348997379
Q ss_pred EEEEE
Q ss_conf 43324
Q T0523 89 WCHVT 93 (120)
Q Consensus 89 ~v~~~ 93 (120)
++.++
T Consensus 104 d~~~H 108 (127)
T d2veaa3 104 DGVFH 108 (127)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
No 15
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=93.91 E-value=0.016 Score=31.58 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=47.5
Q ss_pred CCCE--EEEC-CCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9748--9965-986876036888642013331110012234433332222222222222222222222222222110134
Q T0523 13 PIGL--VLSR-DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFW 89 (120)
Q Consensus 13 p~gi--~~~~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 89 (120)
|-|+ +++. +++|+.++.-..+++|++.++++|+++.+++.. . ........... ..............+|+.+|
T Consensus 34 phG~LLald~~~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~ 109 (127)
T d2o9ca2 34 PHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-Q-WPALQAALPPG--CPDALQYRATLDWPAAGHLS 109 (127)
T ss_dssp TTSEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTT-T-HHHHHHHSCTT--CCTTCCEEEEECCSSSSEEE
T ss_pred CCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCH-H-HHHHHHHHHHC--CCCCCCCEEEEECCCCCEEE
T ss_conf 88489999889997999878989983879689849998998888-8-99999986535--86322230354068993699
Q ss_pred EEEEE
Q ss_conf 33245
Q T0523 90 CHVTG 94 (120)
Q Consensus 90 v~~~~ 94 (120)
+.++.
T Consensus 110 ~~~Hr 114 (127)
T d2o9ca2 110 LTVHR 114 (127)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
No 16
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=67.65 E-value=1.6 Score=20.95 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCCE--EEECCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9748--99659868760368886420133311100122344333322222222222222222222222222221101343
Q T0523 13 PIGL--VLSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWC 90 (120)
Q Consensus 13 p~gi--~~~~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v 90 (120)
|-|+ +++.+++|+.|+.-..+++|++++ .+|+.+.+.+.... ...+...+.....+...... ..+|..+|+
T Consensus 21 phG~LLald~~~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~-~~~~~~~d~ 93 (113)
T d3c2wa3 21 PHGALVTLRADGMVLAASENIQALLGFVAS-PGSYLTQEQVGPEV-----LRMLEEGLTGNGPWSNSVET-RIGEHLFDV 93 (113)
T ss_dssp TTEEEEEECTTSBEEEEETTHHHHTSSCCC-TTCBCCHHHHHHHH-----HHHHHHHHSCSSCCCCEEEE-CCSSSCEEE
T ss_pred CCEEEEEECCCCEEEEECCCHHHHHCCCHH-HHCCCHHHHHCHHH-----HHHHHHHHHCCCCCEEEEEE-CCCCEEEEE
T ss_conf 876999986997099981798988398856-74542787758799-----99998663028983567896-369937999
Q ss_pred EEEE
Q ss_conf 3245
Q T0523 91 HVTG 94 (120)
Q Consensus 91 ~~~~ 94 (120)
.++.
T Consensus 94 ~~H~ 97 (113)
T d3c2wa3 94 IGHS 97 (113)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
Done!