Query         T0524 NP_389718.1, Bacillus subtilis, 325 residues
Match_columns 325
No_of_seqs    129 out of 1996
Neff          9.4 
Searched_HMMs 15564
Date          Fri May 21 18:04:42 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0524.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0524.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1z45a1 b.30.5.4 (A:358-699) G 100.0       0       0  297.1  31.2  294   13-320    16-341 (342)
  2 d1lura_ b.30.5.4 (A:) Aldose 1 100.0       0       0  296.7  30.4  289   14-320     3-325 (329)
  3 d1nsza_ b.30.5.4 (A:) Galactos 100.0       0       0  294.1  30.9  299    4-322     1-339 (340)
  4 d1so0a_ b.30.5.4 (A:) Galactos 100.0       0       0  291.5  31.0  290   13-320    21-341 (344)
  5 d1jova_ b.30.5.7 (A:) Hypothet 100.0 5.6E-45       0  270.3  24.8  250    1-319     9-269 (269)
  6 d1k1xa2 b.30.5.8 (A:385-659) 4  95.5   0.058 3.7E-06   26.9  14.2  159    2-174     3-190 (275)
  7 d4ubpb_ b.85.3.1 (B:) Urease,   88.3    0.55 3.5E-05   21.3   5.4   31  149-181    15-45  (122)
  8 d4ubpb_ b.85.3.1 (B:) Urease,   82.9     1.1 7.2E-05   19.6   5.4   32  148-181    14-45  (122)
  9 d1e9ya1 b.85.3.1 (A:106-238) U  82.4    0.85 5.5E-05   20.2   4.0   32  148-181    12-43  (133)
 10 d1ejxb_ b.85.3.1 (B:) Urease,   78.7     1.6  0.0001   18.8   5.3   31  149-181    13-43  (101)
 11 d1v7wa2 b.30.5.3 (A:1-270) Chi  69.9     2.6 0.00017   17.5   5.9   33  143-175   118-150 (270)
 12 d1so9a_ b.146.1.1 (A:) Cytochr  20.7      14  0.0009   13.3   0.5   35  138-173    24-61  (131)
 13 d1s58a_ b.121.5.2 (A:) Parvovi  20.5      13 0.00084   13.5   0.3   16   26-41    122-137 (536)
 14 d1lp3a_ b.121.5.2 (A:) Dependo  20.2      20  0.0013   12.5   1.7   25  263-288   416-440 (519)

No 1  
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=0  Score=297.09  Aligned_cols=294  Identities=18%  Similarity=0.228  Sum_probs=227.1

Q ss_pred             EEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEECCCCHHHHCC-CCCCCCCCCCCCCCEECCCEEEECCEEEEEC
Q ss_conf             1599998797-3999992138499999989997439966899588638-8732450006654042198798799799944
Q T0524            13 TPAIKAGNEH-LEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHD-TPTLYGIPILFPPNRISDGTFSFRGRTYHFD   90 (325)
Q Consensus        13 ~~~i~L~n~~-l~~~i~p~~Ga~i~s~~~~~~~~~~l~~~~~~~~~~~-~~~~~G~p~~~~~~Ri~~g~f~~~G~~~~l~   90 (325)
                      .+.|+|+|+. +++.|++ +||.|.||+.++  .+++...+..+.|.. ++.+.|+.++|++|||++|.|.++|+.|+|+
T Consensus        16 ~~~~tl~n~~~~~v~i~~-~GA~i~~l~~~~--~~vvlg~d~~~~Y~~~~~~y~Ga~iGr~AnRI~~g~f~~~G~~y~L~   92 (342)
T d1z45a1          16 ARFVTIGAGTRFQATFAN-LGASIVDLKVNG--QSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLT   92 (342)
T ss_dssp             SEEEEESTTSSEEEEEES-BTTCEEEEEETT--EECBCCCSSHHHHTCTTCCCTTCEECSBCSEEGGGEEEETTEEEECC
T ss_pred             EEEEEEECCCCEEEEEEC-CCEEEEEEEECC--EEEEECCCCHHHHHCCCCCEECCEECCCCCEEECCEEEECCEEEEEC
T ss_conf             699999899966999978-890999998999--17881799989970679863787834648834699999999999905


Q ss_pred             CCCCCCCCCCCCCCC---CCCEEEEE-EECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECC--CEEEEEEEEEE
Q ss_conf             689866555687656---62169998-2136782499999984578850046984499999999758--90899999984
Q T0524            91 INEKDKHNHLHGFLY---HEKWNVVT-TKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE--NTLFKHATVMN  164 (325)
Q Consensus        91 ~~~~~~~~~~HG~~~---~~~w~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~t~~L~~--~~L~i~~~v~N  164 (325)
                      +|++.  +.+||...   .+.|++.. .+.+....++++.+.   +.+...+||+++.++++|+|++  ..|+++++++|
T Consensus        93 ~Ne~~--~~lHgg~~g~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~GfPg~~~~~vtY~L~~~~~~l~i~~~~~~  167 (342)
T d1z45a1          93 VNNGV--NANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLI---DNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKL  167 (342)
T ss_dssp             CCBTT--BEETTGGGCGGGSBCEEEEEEEEETTEEEEEEEEE---ECGGGSSSSSEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             CCCCC--CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEE---CCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEC
T ss_conf             78997--65654457877144577887416773489999988---89877780068999999999235785089999950


Q ss_pred             CCCCEEEEEHHHCCEEEECC------CCEEEEECCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCCC--CCCCCEEEEE
Q ss_conf             77861553100145365079------9719998477078876765788741357-8734344661057--3324604788
Q T0524           165 KGKEAFPWGIGYHTTFIFPA------ESSLFSLTADQQWELDERLLPTGKLMDV-PYKEALHEGMDLR--HKQLDDVFLS  235 (325)
Q Consensus       165 ~g~~~~p~~~~~H~yf~~~~------~~~~l~~~~~~~~~~d~~~~pt~~~~~~-~~~~~~~~~~~~~--~~~~d~~~~~  235 (325)
                      .+++++|+++++||||++++      .+++|++++..++++|+..+|||...+. ...+++..+..+.  ...+|+++..
T Consensus       168 ~~d~~tP~nl~~H~YFNL~g~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~df~~~~~i~~~~~~~d~~~~~  247 (342)
T d1z45a1         168 TAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLGPKNPQFDCCFVV  247 (342)
T ss_dssp             EESSEEECBCEECCEECTTTTSCSSSTTEEEEESCCEEEEECTTSCEEEEEEECSCCBTTSSSCEEECSSCCCCEEEEES
T ss_pred             CCCCCEEEEEECCEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEE
T ss_conf             57861488861311686168775135303788756889987466654334457778853322654345565521024410


Q ss_pred             CCCC---------CCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCC------CCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             2478---------887627999968997599999859977599964886------7883999325478887888877763
Q T0524           236 SYQK---------RGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADG------KQGYLCPEPYTWVTNAVNLDLPSSL  300 (325)
Q Consensus       236 ~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~------~~~~vciEP~t~~~da~n~~~~~~~  300 (325)
                      ....         ......+.+.++.+|++|.+.++.  +.+++|++..      ....||||||+ +|||+|++.+.+ 
T Consensus       248 d~~~~~~~~~~~~~~~~~~a~l~~~~sg~~l~v~t~~--p~~qvYT~~~~~~~~~~~~g~clEpq~-~PdA~N~~~~~~-  323 (342)
T d1z45a1         248 DENAKPSQINTLNNELTLIVKAFHPDSNITLEVLSTE--PTYQFYTGDFLSAGYEARQGFAIEPGR-YIDAINQENWKD-  323 (342)
T ss_dssp             CSSCCCCCSBCTTSCCEEEEEEEETTTTEEEEEEESS--SEEEEECCTTCCTTCCTTSCEEEEEES-CSSGGGCTTTGG-
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCC--CEEEEECCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCC-
T ss_conf             5887632225556764168999928989689998289--879998898678888888899995888-987557868998-


Q ss_pred             CCCEEECCCCEEEEEEEEEE
Q ss_conf             67589789976999999999
Q T0524           301 TGLQVLEPGEETTAKSSITI  320 (325)
Q Consensus       301 ~g~~~L~PGe~~~~~~~i~i  320 (325)
                        +++|+|||++...+.+++
T Consensus       324 --~i~L~pGe~y~~~t~y~F  341 (342)
T d1z45a1         324 --CVTLKNGETYGSKIVYRF  341 (342)
T ss_dssp             --GGEEETTCEEEEEEEEEE
T ss_pred             --CEEECCCCEEEEEEEEEE
T ss_conf             --767099698999999997


No 2  
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=100.00  E-value=0  Score=296.68  Aligned_cols=289  Identities=20%  Similarity=0.277  Sum_probs=228.3

Q ss_pred             EEEEEECCC-EEEEEECCCCCEEEEEEEC---CCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCEECCCEEEECCEEEEE
Q ss_conf             599998797-3999992138499999989---997439966899588638873245000665404219879879979994
Q T0524            14 PAIKAGNEH-LEMIVVPEWGSNVISLVDK---TTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHF   89 (325)
Q Consensus        14 ~~i~L~n~~-l~~~i~p~~Ga~i~s~~~~---~~~~~~l~~~~~~~~~~~~~~~~G~p~~~~~~Ri~~g~f~~~G~~~~l   89 (325)
                      -.|+|+|+. +++.|++ +||.|.||+.+   |...+++..++..+.+..++.++|+.++|++|||++|.|.++|++|+|
T Consensus         3 ~~i~l~N~~g~~v~i~~-~GA~i~~l~~pd~~g~~~~vvlg~d~~~~Y~~~~~~~Ga~igr~aNRI~~g~f~~~G~~y~L   81 (329)
T d1lura_           3 GFIEIANKQGLTATLLP-FGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTM   81 (329)
T ss_dssp             CCEEEECSSSCEEEEET-BTTEEEEEEEECTTSCEEECBCCCSSHHHHHHCSSCTTCEECSBCSEEGGGEEEETTEEEEC
T ss_pred             CEEEEECCCCCEEEEEC-CCCEEEEEEEECCCCCEEEEEECCCCHHHHHHCCCCCCCEECCCCCEEECCEEEECCEEEEE
T ss_conf             67999979993999988-79299999988878988030878999899820887647582670770648869899999882


Q ss_pred             CCCCCCCCCCCCCCCCC---CCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECC
Q ss_conf             46898665556876566---216999821367824999999845788500469844999999997589089999998477
Q T0524            90 DINEKDKHNHLHGFLYH---EKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKG  166 (325)
Q Consensus        90 ~~~~~~~~~~~HG~~~~---~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~t~~L~~~~L~i~~~v~N~g  166 (325)
                      ++|++  ++++||....   +.|+++....+  ..  ++.+.   +.+...+||++++++++|+|+++. .+.+++++.+
T Consensus        82 ~~N~~--~n~lHGg~~g~~~~~w~v~~~~~~--~v--~~~~~---~~~~~~GyPg~l~~~vtY~L~~~~-~l~i~~~a~~  151 (329)
T d1lura_          82 TPNNG--PHYLHGGPNGLGYRKWEVVRHAPE--SV--SFSVR---ANEQDDGLPGDAKIDVTYTVNDRN-QLIIEHHATC  151 (329)
T ss_dssp             CCSBT--TBEETTCTTSGGGSBCEEEEEETT--EE--EEEEE---EEHHHHSSSSEEEEEEEEEECTTS-EEEEEEEEEC
T ss_pred             CCCCC--CCCCCCCCCCCCEEEEEEEEECCC--EE--EEEEE---ECCCCCCCCCCEEEEEEEEECCCC-EEEEEEEEEE
T ss_conf             36778--863466779843677778860576--06--99998---248766765426899999982487-8999978860


Q ss_pred             CCEEEEEHHHCCEEEECC----CCEEEEECCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCC--------CCCEEE
Q ss_conf             861553100145365079----9719998477078876765788741357-873434466105733--------246047
Q T0524           167 KEAFPWGIGYHTTFIFPA----ESSLFSLTADQQWELDERLLPTGKLMDV-PYKEALHEGMDLRHK--------QLDDVF  233 (325)
Q Consensus       167 ~~~~p~~~~~H~yf~~~~----~~~~l~~~~~~~~~~d~~~~pt~~~~~~-~~~~~~~~~~~~~~~--------~~d~~~  233 (325)
                      ++++|+++++|+||++..    .+++|+++++.++++|+..+|||.+.+. ...+||+.+..+...        .+|++|
T Consensus       152 d~~tp~nlt~H~YFnL~~~~~i~~h~L~i~a~~~l~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~d~~~  231 (329)
T d1lura_         152 DTPGLLALTNHAYWNLDGSDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDL  231 (329)
T ss_dssp             SSCEECBCEECCEECSSCCSCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTCEETTCSCCCSSCCCCCEEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCE
T ss_conf             65321232466516413222355708995767199747543644321354355334436434543334544314137877


Q ss_pred             EECCCCCC--CCCEEEEEECCCCEEEEEEECCCCCEEEEECCCC------------CCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             88247888--7627999968997599999859977599964886------------788399932547888788887776
Q T0524           234 LSSYQKRG--GENQAVIYHQHAHISIIYKADEQFKHWVVYNADG------------KQGYLCPEPYTWVTNAVNLDLPSS  299 (325)
Q Consensus       234 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~------------~~~~vciEP~t~~~da~n~~~~~~  299 (325)
                      ........  ....+.+.++.+|++|++..+.  +.+++|++..            .+..||||||+ +|||+|++.+.+
T Consensus       232 ~~~~~~~~~~~~~~~~l~~~~sg~~l~v~t~~--p~~qvYT~~~l~~~~~~g~~~~~~~gi~lEpq~-~PdA~N~~~f~~  308 (329)
T d1lura_         232 VITKKTPPSTPSTYLRFWSEKSGIELSITTSY--PVIHLYASKFLDCKGKKGEHYKANKALAIEPQF-HSAAPNFDHFPD  308 (329)
T ss_dssp             EECCCCC----CCCEEEECTTTCEEEEEEESS--SEEEEECCTTCCEECGGGCEECTTCCEEEEEES-CTTGGGCTTSCC
T ss_pred             EEEECCCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCC
T ss_conf             98531468875134899679876699996799--889996898767778798796899989997369-998546678998


Q ss_pred             CCCCEEECCCCEEEEEEEEEE
Q ss_conf             367589789976999999999
Q T0524           300 LTGLQVLEPGEETTAKSSITI  320 (325)
Q Consensus       300 ~~g~~~L~PGe~~~~~~~i~i  320 (325)
                          ++|+|||+++.++.+++
T Consensus       309 ----~~L~pge~y~~~~~y~F  325 (329)
T d1lura_         309 ----VSLRPGDHYCQEIVYTF  325 (329)
T ss_dssp             ----CEECTTCCEEEEEEEEE
T ss_pred             ----EEECCCCEEEEEEEEEE
T ss_conf             ----18999999988999998


No 3  
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]}
Probab=100.00  E-value=0  Score=294.08  Aligned_cols=299  Identities=18%  Similarity=0.221  Sum_probs=231.3

Q ss_pred             CEEEEEC-CCEEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCEECCCEEE
Q ss_conf             0578651-981599998797-39999921384999999899974399668995886388732450006654042198798
Q T0524             4 FIEKITY-LGTPAIKAGNEH-LEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFS   81 (325)
Q Consensus         4 ~~~~~~~-~G~~~i~L~n~~-l~~~i~p~~Ga~i~s~~~~~~~~~~l~~~~~~~~~~~~~~~~G~p~~~~~~Ri~~g~f~   81 (325)
                      .|+...| +|.+.|+|+|+. +++.|++ +||.|.+|+.++  ++++..++....+..++.+.|+.++|++|||++|.|.
T Consensus         1 ~~~~~~fg~~~~~~tl~N~~gl~v~i~~-~GA~i~~~~~~~--~~vvlg~d~~~~y~~~~~~~Ga~vGp~anRI~~g~f~   77 (340)
T d1nsza_           1 SIKIRDFGLGSDLISLTNKAGVTISFTN-LGARIVDWQKDG--KHLILGFDSAKEYLEKDAYPGATVGPTAGRIKDGLVK   77 (340)
T ss_dssp             CEEEEEEETTEEEEEEECTTSCEEEEET-BTTEEEEEEETT--EESBCCCSSHHHHHHHCSCTTCEECSBCSEEGGGEEE
T ss_pred             CCEECCCCCCEEEEEEECCCCCEEEEEC-CCEEEEEECCCC--CEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9367028985069999949981999979-995999820499--7589469998998308883076814536714488301


Q ss_pred             ECCEEEEECCCCCCCCCCCCCCCC---CCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCEEEE
Q ss_conf             799799944689866555687656---62169998213678249999998457885004698449999999975890899
Q T0524            82 FRGRTYHFDINEKDKHNHLHGFLY---HEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFK  158 (325)
Q Consensus        82 ~~G~~~~l~~~~~~~~~~~HG~~~---~~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~t~~L~~~~L~i  158 (325)
                      ++|+.|+|++|++  ++++||...   .+.|++...+. +....+++++..   .+...+||++++++++|+|+++. .+
T Consensus        78 ~~G~~~~L~~Ne~--~~~lHGG~~g~~~~~w~~~~~~~-~~~~~v~f~~~~---~~g~~GfPg~~~~~vtY~L~~~~-~l  150 (340)
T d1nsza_          78 ISGKDYILNQNEG--PQTLHGGEESIHTKLWTYEVTDL-GAEVQVKFSLVS---NDGTNGYPGKIEMSVTHSFDDDN-KW  150 (340)
T ss_dssp             ETTEEEECCCCBT--TBEETTSTTCGGGSBCEEEEEEC-SSEEEEEEEEEE---CTTGGGCCSCEEEEEEEEEETTC-EE
T ss_pred             CCCEEEEECCCCC--CCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEC---CCCCCCCCCCEEEEEEEEECCCC-EE
T ss_conf             8998987168889--86213454565643566776627-886179999985---76456866416899999972698-08


Q ss_pred             EEEEEECCCCEEEEEHHHCCEEEECC------CCEEEEECCCCEEEE-CCCCCCCCCCCCC-CCCCCCCCCCCCCC----
Q ss_conf             99998477861553100145365079------971999847707887-6765788741357-87343446610573----
Q T0524           159 HATVMNKGKEAFPWGIGYHTTFIFPA------ESSLFSLTADQQWEL-DERLLPTGKLMDV-PYKEALHEGMDLRH----  226 (325)
Q Consensus       159 ~~~v~N~g~~~~p~~~~~H~yf~~~~------~~~~l~~~~~~~~~~-d~~~~pt~~~~~~-~~~~~~~~~~~~~~----  226 (325)
                      .++++|.+++++|+++++||||++.+      .+++|+++++.++++ |+..+|||++.+. ...+||+....+..    
T Consensus       151 ~i~~~a~~~~~tp~nlt~H~YFnL~g~~~~~i~~h~L~i~a~~~l~~~D~~~iPTG~~~~v~~t~~Dfr~~~~l~~~~~~  230 (340)
T d1nsza_         151 KIHYEAISDKDTVFNPTGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNS  230 (340)
T ss_dssp             EEEEEEEESSCEECBCEECCEECTTSCTTSCGGGCEEEECEEEECCBCSTTCCBCSCCEECTTSTTCCSSCEEHHHHHTC
T ss_pred             EEEEEEEECCCCEEEECCCCCEECCCCCCCCCCHHEEEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCEEECCCCCC
T ss_conf             99999982776056614665200388755642000462037579997378766575151442343245676030641013


Q ss_pred             --------CCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCC-------------CCCCEEEEECC
Q ss_conf             --------324604788247888762799996899759999985997759996488-------------67883999325
Q T0524           227 --------KQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNAD-------------GKQGYLCPEPY  285 (325)
Q Consensus       227 --------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-------------~~~~~vciEP~  285 (325)
                              ..+|++|...... .....+.+..  ++++|+++++.  +.+++||..             .....||||||
T Consensus       231 ~~~~~~~~~G~D~~fvl~~~~-~~~~~~~l~~--~~~~l~v~T~~--p~~qvYT~n~~~~~~~~~~~~~~~~~gi~lEpq  305 (340)
T d1nsza_         231 NMEQVQLVKGIDHPFLLDQLG-LDKEQARLTL--DDTSISVFTDQ--PSIVIFTANFGDLGTLYHEKKQVHHGGITFECQ  305 (340)
T ss_dssp             CCHHHHHHTSCEEEEEESSCB-TTSCCEEEEE--TTEEEEEEESS--SEEEEECCCCTTCCCEETTEECCTTCCEECEEE
T ss_pred             CHHHHCCCCCCCCCEEECCCC-CCCCEEEEEC--CCCCEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             133412567888745625678-8742369943--99758999689--989998377677655578876788788999647


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCEEEEEE--EEEEEE
Q ss_conf             4788878888777636758978997699999--999986
Q T0524           286 TWVTNAVNLDLPSSLTGLQVLEPGEETTAKS--SITIEL  322 (325)
Q Consensus       286 t~~~da~n~~~~~~~~g~~~L~PGe~~~~~~--~i~ie~  322 (325)
                       .+|||+|++.+.+    ++|+|||+++.++  +|+++.
T Consensus       306 -~~Pda~N~~~f~~----~~L~pge~y~~~t~Y~Fs~~~  339 (340)
T d1nsza_         306 -VSPGSEQIPELGD----ISLKAGEKYQATTIYSLHTKL  339 (340)
T ss_dssp             -SCTTTTTCGGGCC----CEECTTCEEEEEEEEEEEECC
T ss_pred             -CCCCCCCCCCCCC----EEECCCCEEEEEEEEEEEEEE
T ss_conf             -8998657778998----289998999889999999982


No 4  
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=291.48  Aligned_cols=290  Identities=21%  Similarity=0.275  Sum_probs=221.4

Q ss_pred             EEEEEEECCCEEEEEECCCCCEEEEEEEC---CCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCEECCCEEEECCEEEEE
Q ss_conf             15999987973999992138499999989---997439966899588638873245000665404219879879979994
Q T0524            13 TPAIKAGNEHLEMIVVPEWGSNVISLVDK---TTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHF   89 (325)
Q Consensus        13 ~~~i~L~n~~l~~~i~p~~Ga~i~s~~~~---~~~~~~l~~~~~~~~~~~~~~~~G~p~~~~~~Ri~~g~f~~~G~~~~l   89 (325)
                      +..++|+|+++++.|++ +||.|.+|+.+   |...+++..++..+.+..++.++|+.++|++|||++|.|.++|+.|+|
T Consensus        21 v~~~tl~n~~l~v~i~~-~GA~i~~l~~~d~~G~~~~vvlg~~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~~y~l   99 (344)
T d1so0a_          21 VEKFQLQSDLLRVDIIS-WGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHL   99 (344)
T ss_dssp             EEEEEEECSSCEEEEET-BTTEEEEEEEECTTSCEEECBCCCSSHHHHHSSCSCTTCEECSBCSEEGGGEEEETTEEEEC
T ss_pred             EEEEEEECCCEEEEEEC-CCCEEEEEEEECCCCCEEEEEECCCCHHHHHHCCCCCCCEEECCCCEEECCEEEECCEEEEE
T ss_conf             99999986999999978-69099999988889978664968999899840788668784047880069979989999972


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCCE
Q ss_conf             46898665556876566216999821367824999999845788500469844999999997589089999998477861
Q T0524            90 DINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEA  169 (325)
Q Consensus        90 ~~~~~~~~~~~HG~~~~~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~t~~L~~~~L~i~~~v~N~g~~~  169 (325)
                      ++|++...++.|+..+...|+.....  ....  .+.+.   +++...+||++++++++|+|.++.+.++  ++|.++++
T Consensus       100 ~~n~~~~~~hg~~~~~~~~~~~~~~~--~~~v--~~~~~---~~~~~~gfPg~~~~~vty~l~~~~~~~~--~~~~s~~~  170 (344)
T d1so0a_         100 AINKEPNSLHGGVRGFDKVLWTPRVL--SNGV--QFSRI---SPDGEEGYPGELKVWVTYTLDGGELIVN--YRAQASQA  170 (344)
T ss_dssp             CCSBTTBEETTSSSCGGGSBCEEEEE--TTEE--EEEEE---ECTTGGGCCSCEEEEEEEEEETTEEEEE--EEEEESSC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECC--EEEE--EEEEE---ECCCCCCCCCEEEEEEEEEECCCCEEEE--EECCCCCC
T ss_conf             46778765324789744578774023--0069--99999---5676689660478999999158832678--83155766


Q ss_pred             EEEEHHHCCEEEECC------CCEEEEECCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCC-------CCCEEEEE
Q ss_conf             553100145365079------9719998477078876765788741357-873434466105733-------24604788
Q T0524           170 FPWGIGYHTTFIFPA------ESSLFSLTADQQWELDERLLPTGKLMDV-PYKEALHEGMDLRHK-------QLDDVFLS  235 (325)
Q Consensus       170 ~p~~~~~H~yf~~~~------~~~~l~~~~~~~~~~d~~~~pt~~~~~~-~~~~~~~~~~~~~~~-------~~d~~~~~  235 (325)
                      +|+++++|+||+++.      +++.|.+++..++++|+..+||+...+. ...++++....+...       ..++.+ .
T Consensus       171 tp~~lt~H~yfnl~~~~~~~i~~~~L~i~a~~~l~~d~~~iPtg~~~~~~~~~~df~~~~~i~~~~~~~~~~~~~~~~-~  249 (344)
T d1so0a_         171 TPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNF-C  249 (344)
T ss_dssp             EECBCEECCCBCTTCTTCSCCTTCEEEECEEEECCBCTTSCBCSCCEECTTSTTCCSSCEEHHHHHHHHTCCCCEEEE-E
T ss_pred             CCCCCCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEE-E
T ss_conf             410000443231056655301121688425708988875675775234668841024741012001210244000015-6


Q ss_pred             CCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCC--------------CCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             2478887627999968997599999859977599964886--------------78839993254788878888777636
Q T0524           236 SYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADG--------------KQGYLCPEPYTWVTNAVNLDLPSSLT  301 (325)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--------------~~~~vciEP~t~~~da~n~~~~~~~~  301 (325)
                      ..........+.+.++.++++|++..+  ++++++||+..              ....||||||+ +|||+|++.+.   
T Consensus       250 ~~~~~~~~~~a~l~~~~s~~~l~v~t~--~p~~~vYT~~~~~~~~~~~~g~~~~~~~giclEpq~-~pdA~N~~~~~---  323 (344)
T d1so0a_         250 LKGSKEKHFCARVHHAASGRVLEVYTT--QPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQN-WPDAVNQPRFP---  323 (344)
T ss_dssp             ECCSSSCEEEEEEEETTTTEEEEEEES--SSEEEEECCTTCCSCCBCGGGCBCCTTSCBEEEEES-CTTGGGCTTSC---
T ss_pred             ECCCCCCCCEEEEECCCCCEEEEECCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCC---
T ss_conf             527777631179990899818997699--988999889877864437788465887899996888-98765788999---


Q ss_pred             CCEEECCCCEEEEEEEEEE
Q ss_conf             7589789976999999999
Q T0524           302 GLQVLEPGEETTAKSSITI  320 (325)
Q Consensus       302 g~~~L~PGe~~~~~~~i~i  320 (325)
                       .++|+|||+++.+.++++
T Consensus       324 -~~iL~pge~y~~~t~y~F  341 (344)
T d1so0a_         324 -PVLLRPGEEYDHTTWFKF  341 (344)
T ss_dssp             -CCEECTTCCEEEEEEEEE
T ss_pred             -CEEECCCCEEEEEEEEEE
T ss_conf             -869999898989999999


No 5  
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]}
Probab=100.00  E-value=5.6e-45  Score=270.28  Aligned_cols=250  Identities=14%  Similarity=0.126  Sum_probs=185.5

Q ss_pred             CCCCEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCHHHHCCCCCCCCCCCCCC-CCEECCCE
Q ss_conf             97305786519815999987973999992138499999989997439966899588638873245000665-40421987
Q T0524             1 MANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFP-PNRISDGT   79 (325)
Q Consensus         1 ~~~~~~~~~~~G~~~i~L~n~~l~~~i~p~~Ga~i~s~~~~~~~~~~l~~~~~~~~~~~~~~~~G~p~~~~-~~Ri~~g~   79 (325)
                      ||.-++..+.+|+++|+|+|+.++|+|.. +||+|+||+.+..+.|+||+++.+.+...+++++|+|+||| +|+     
T Consensus         9 ~~~~~~~~~~~~l~~i~i~~~~~~a~i~~-~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~-----   82 (269)
T d1jova_           9 LTPELHLVQHNDIPVLHLKHAVGTAKISL-QGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGG-----   82 (269)
T ss_dssp             EETTEEEEEETTEEEEEEEETTEEEEEET-BTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGG-----
T ss_pred             CCCEEEEECCCCCCEEEEECCCEEEEEEC-CCCEEEEEEECCCCCEEEEECCHHHCCCCCCCCCCCCEECCCCCC-----
T ss_conf             58807851319954899948988999989-998999999799991489838745436778634886030766599-----


Q ss_pred             EEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCEEEEE
Q ss_conf             98799799944689866555687656621699982136782499999984578850046984499999999758908999
Q T0524            80 FSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKH  159 (325)
Q Consensus        80 f~~~G~~~~l~~~~~~~~~~~HG~~~~~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~t~~L~~~~L~i~  159 (325)
                                      .++++|||+|++.|++++++.+.....+++.+         ..|||.|+++++|+|+     ++
T Consensus        83 ----------------~~~p~HGFAR~~~w~l~~~~~~~~~~~l~~~l---------~~~~~~f~~~~~~~lt-----l~  132 (269)
T d1jova_          83 ----------------VKQPAHGTARIRLWQLSHYYISVHKVRLEFEL---------FSDLNIIEAKVSMVFT-----DK  132 (269)
T ss_dssp             ----------------GSSSTTBSGGGSBCEEEEEEEETTEEEEEEEE---------ECTTSCEEEEEEEEES-----SS
T ss_pred             ----------------CCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE---------CCCCCCCEEEEEEEEC-----CE
T ss_conf             ----------------99998852136640898770677508999973---------1687721199999933-----17


Q ss_pred             EEEEECCCCEEEEEHHHCCEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             99984778615531001453650799719998477078876765788741357873434466105733246047882478
Q T0524           160 ATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQK  239 (325)
Q Consensus       160 ~~v~N~g~~~~p~~~~~H~yf~~~~~~~~l~~~~~~~~~~d~~~~pt~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  239 (325)
                      ++++|++..+|||++|+||||++++............. .++.   .......       .........+|.+|...   
T Consensus       133 ~~l~n~~~~~~pf~~g~HpyF~v~d~~~~~v~gl~~~~-~~~~---~~~~~~~-------~~~~~~~~~~D~i~~~~---  198 (269)
T d1jova_         133 CHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC-FNSL---NQQQENV-------PSPRHISENVDCIYSAE---  198 (269)
T ss_dssp             EEEEEEECCSSCEEEEECCEEECSCGGGEEEESCCSEE-EETT---TTEEEEC-------CSSBCCSSCEEEEEECS---
T ss_pred             EEEEECCCCCCCCEECCCCEEECCCCCCEEEECCCCCC-CCCC---CCCCCCC-------CCCCCCCCCEEEEECCC---
T ss_conf             99998469974320203613742882215996687633-0100---0433005-------88724674744996079---


Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCC----------CCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             887627999968997599999859977599964886----------7883999325478887888877763675897899
Q T0524           240 RGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADG----------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG  309 (325)
Q Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~----------~~~~vciEP~t~~~da~n~~~~~~~~g~~~L~PG  309 (325)
                         ...+.+.++..++++.+..+ .+++++||||+.          +++||||||+.+               ..+|+||
T Consensus       199 ---~~~~~i~d~~~~~~i~v~~~-g~~~~vVWnP~~~~a~~~~d~~~~~fvCVEp~~~---------------~~~L~PG  259 (269)
T d1jova_         199 ---NMQNQILDKSFNRTIALHHH-NASQFVLWNPWHKKTSGMSETGYQKMLCLETARI---------------HHLLEFG  259 (269)
T ss_dssp             ---SSEEEEEETTTTEEEEEEEE-SCSEEEEEECTTSCCTTCCTTGGGGEEEEEEEEE---------------EEEECTT
T ss_pred             ---CCCEEEEECCCCCEEEEEEE-CCCCEEEECCCCCHHCCCCCCCCCCEEEECCCCC---------------CCEECCC
T ss_conf             ---98689996899988999981-8984899898500001064468878899791667---------------7667899


Q ss_pred             CEEEEEEEEE
Q ss_conf             7699999999
Q T0524           310 EETTAKSSIT  319 (325)
Q Consensus       310 e~~~~~~~i~  319 (325)
                      |+++.+++|+
T Consensus       260 es~~~~~~ir  269 (269)
T d1jova_         260 ESLSVEISLK  269 (269)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEEC
T ss_conf             8199999979


No 6  
>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=95.46  E-value=0.058  Score=26.86  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEC-CCCHHHHCCCCCCC--------CC------
Q ss_conf             7305786519815999987973999992138499999989997439966-89958863887324--------50------
Q T0524             2 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLRE-PETAESFHDTPTLY--------GI------   66 (325)
Q Consensus         2 ~~~~~~~~~~G~~~i~L~n~~l~~~i~p~~Ga~i~s~~~~~~~~~~l~~-~~~~~~~~~~~~~~--------G~------   66 (325)
                      ++-+....|+|.+=|.|+|+.+.+.+.|..||.|++|..+.....++-. ....+.|.......        |+      
T Consensus         3 ~~~~~DfD~DG~~Ev~l~~~~~~~~~~p~~GG~l~Eld~k~~~~Nl~dTL~Rr~E~YH~~~~~~~~~~~~~egi~siHe~   82 (275)
T d1k1xa2           3 ENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPRRWEHYHEVPEATKPEKESEEGIASIHEL   82 (275)
T ss_dssp             CCEEECSSSSSSCEEEEECSSEEEEEETTTTTEEEEEEETTTTEETTCCCCCCCCTTCC---------------------
T ss_pred             CCCEECCCCCCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             64011567899611799768689999107798799981255334556742035312113442388633576676678895


Q ss_pred             ---------CCCCCCCEECCCEEEECCEEEEECCCCCC-----CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf             ---------00665404219879879979994468986-----6555687656621699982136782499999984578
Q T0524            67 ---------PILFPPNRISDGTFSFRGRTYHFDINEKD-----KHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSEL  132 (325)
Q Consensus        67 ---------p~~~~~~Ri~~g~f~~~G~~~~l~~~~~~-----~~~~~HG~~~~~~w~v~~~~~~~~~~~~~~~~~~~~~  132 (325)
                               -.+.| ..-+...  +..  |-+++....     ....-.|--.+.++++....   +..++...-...  
T Consensus        83 ~~~k~e~l~~~L~y-D~~~R~s--~iD--Hf~~~~~tle~~~~~~~~E~gDF~~~~y~~~~~~---~~v~l~r~G~v~--  152 (275)
T d1k1xa2          83 GKQIPEEIRRELAY-DWQLRAI--LQD--HFIKPEETLDNYRLVKYHELGDFVNQPYEYEMIE---NGVKLWREGGVY--  152 (275)
T ss_dssp             --CCCHHHHTTCCC-CSSCCCE--EEE--EEECTTCCHHHHHTTCSCCCBSCSSSCCEEEEET---TEEEEEEEEEEE--
T ss_pred             HCCCCCCHHHHCCC-CCCCCCE--EEE--EECCCCCCHHHHHCCCCCCCCCCCCCCEEEEECC---CCEEEEEECCCC--
T ss_conf             01233002644366-6535754--588--7237887888875478300156557735744226---738999978631--


Q ss_pred             CCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCCEEEEEH
Q ss_conf             850046984499999999758908999999847786155310
Q T0524           133 PHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGI  174 (325)
Q Consensus       133 ~~~~~~~P~~~~~~~t~~L~~~~L~i~~~v~N~g~~~~p~~~  174 (325)
                          ..-..+++++..|+|..+++.+.|++.+.++.+.-|++
T Consensus       153 ----~~~~~p~~l~K~~~l~~~~~~v~y~~~~e~~~~~~f~v  190 (275)
T d1k1xa2         153 ----AEEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGV  190 (275)
T ss_dssp             ----SSSEEEEEEEEEEEEETTEEEEEEEEEESSCCCEEEEE
T ss_pred             ----CCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEE
T ss_conf             ----35635659999999817826999999348984312899


No 7  
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=88.30  E-value=0.55  Score=21.32  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             EEECCCEEEEEEEEEECCCCEEEEEHHHCCEEE
Q ss_conf             997589089999998477861553100145365
Q T0524           149 YTIKENTLFKHATVMNKGKEAFPWGIGYHTTFI  181 (325)
Q Consensus       149 ~~L~~~~L~i~~~v~N~g~~~~p~~~~~H~yf~  181 (325)
                      +.|....-.++++|+|+||+|..+  |.|.-|.
T Consensus        15 I~lN~gr~~~~l~V~NtGDRpIQV--GSH~HF~   45 (122)
T d4ubpb_          15 IEINAGREKTTIRVSNTGDRPIQV--GSHIHFV   45 (122)
T ss_dssp             EETTTTSCEEEEEEEECSSSCEEE--ETTSCGG
T ss_pred             EEECCCCCEEEEEEEECCCCCEEE--CCCCCHH
T ss_conf             886599977899987479863255--2635736


No 8  
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} SCOP: d1e9ya1 d1ejxb_
Probab=82.87  E-value=1.1  Score=19.58  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             EEEECCCEEEEEEEEEECCCCEEEEEHHHCCEEE
Q ss_conf             9997589089999998477861553100145365
Q T0524           148 TYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFI  181 (325)
Q Consensus       148 t~~L~~~~L~i~~~v~N~g~~~~p~~~~~H~yf~  181 (325)
                      .+.|....=.++++|+|+||+|.  +.|.|.-|.
T Consensus        14 ~I~lN~gr~~~~l~V~NtGDRpI--QVGSHyHF~   45 (122)
T d4ubpb_          14 EIEINAGREKTTIRVSNTGDRPI--QVGSHIHFV   45 (122)
T ss_dssp             EEETTTTSCEEEEEEEECSSSCE--EEETTSCGG
T ss_pred             CEEECCCCCEEEEEEEECCCCCE--EECCEECHH
T ss_conf             67866999668998864688532--325310578


No 9  
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=82.36  E-value=0.85  Score=20.24  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=22.8

Q ss_pred             EEEECCCEEEEEEEEEECCCCEEEEEHHHCCEEE
Q ss_conf             9997589089999998477861553100145365
Q T0524           148 TYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFI  181 (325)
Q Consensus       148 t~~L~~~~L~i~~~v~N~g~~~~p~~~~~H~yf~  181 (325)
                      .+.|....-.++++|+|+|++|..  .|.|.-|.
T Consensus        12 ~I~lN~gr~~~~l~V~NtGDRpIQ--VGSH~HF~   43 (133)
T d1e9ya1          12 DITINEGKKAVSVKVKNVGDRPVQ--IGSHFHFF   43 (133)
T ss_dssp             EEETTTTCCCCEEEEEECSSSCEE--EETTSCGG
T ss_pred             CEEECCCCCEEEEEEEECCCCCEE--ECCCCCHH
T ss_conf             688669996799998737886325--52635746


No 10 
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=78.69  E-value=1.6  Score=18.75  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             EEECCCEEEEEEEEEECCCCEEEEEHHHCCEEE
Q ss_conf             997589089999998477861553100145365
Q T0524           149 YTIKENTLFKHATVMNKGKEAFPWGIGYHTTFI  181 (325)
Q Consensus       149 ~~L~~~~L~i~~~v~N~g~~~~p~~~~~H~yf~  181 (325)
                      +.|..+.-.++++|+|+||+|..  .|.|.-|.
T Consensus        13 I~lN~gr~~~~l~V~NtGDRpIQ--VGSH~HF~   43 (101)
T d1ejxb_          13 IALNTGRATCRVVVENHGDRPIQ--VGSHYHFA   43 (101)
T ss_dssp             EECSTTCCEEEEEEEECSSSCEE--EETTSCGG
T ss_pred             EEECCCCCEEEEEEEECCCCCEE--ECCCCCHH
T ss_conf             88769996799998747886236--61624757


No 11 
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=69.91  E-value=2.6  Score=17.46  Aligned_cols=33  Identities=9%  Similarity=-0.055  Sum_probs=21.7

Q ss_pred             EEEEEEEEECCCEEEEEEEEEECCCCEEEEEHH
Q ss_conf             999999997589089999998477861553100
Q T0524           143 AVVRMTYTIKENTLFKHATVMNKGKEAFPWGIG  175 (325)
Q Consensus       143 ~~~~~t~~L~~~~L~i~~~v~N~g~~~~p~~~~  175 (325)
                      .++++.+..+++.=-..++++|.++++--+++.
T Consensus       118 ~e~t~fVp~~d~vEv~~l~l~N~s~~~R~Lsvt  150 (270)
T d1v7wa2         118 ARKTLFVPKGEDAEIWDVVIKNTSDQVRTISAF  150 (270)
T ss_dssp             EEEEEECCTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEEEECCCCCEEEEEE
T ss_conf             999999827998899999999799992799999


No 12 
>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}
Probab=20.74  E-value=14  Score=13.34  Aligned_cols=35  Identities=14%  Similarity=0.026  Sum_probs=21.3

Q ss_pred             CCCEEEEE---EEEEEECCCEEEEEEEEEECCCCEEEEE
Q ss_conf             69844999---9999975890899999984778615531
Q T0524           138 QFPHHAVV---RMTYTIKENTLFKHATVMNKGKEAFPWG  173 (325)
Q Consensus       138 ~~P~~~~~---~~t~~L~~~~L~i~~~v~N~g~~~~p~~  173 (325)
                      +.|+.|.-   .+++.. +..-.+.+.++|.+++++.-.
T Consensus        24 ~lpW~F~P~~~~i~V~p-Ge~~~v~y~a~N~s~~~~~g~   61 (131)
T d1so9a_          24 GLPWEFVPVQRDIDVRI-GETVQIMYRAKNLASTPTTGQ   61 (131)
T ss_dssp             TSCEEEECSCSEEEECT-TCCCCEEEEEEECSSSCEECC
T ss_pred             CCCEEEEECCEEEEEEC-CCEEEEEEEEECCCCCCEEEE
T ss_conf             98479993653899937-973999999999999839999


No 13 
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Human parvovirus B19 [TaxId: 10798]}
Probab=20.46  E-value=13  Score=13.53  Aligned_cols=16  Identities=25%  Similarity=0.190  Sum_probs=7.3

Q ss_pred             EEECCCCCEEEEEEEC
Q ss_conf             9992138499999989
Q T0524            26 IVVPEWGSNVISLVDK   41 (325)
Q Consensus        26 ~i~p~~Ga~i~s~~~~   41 (325)
                      +|..++=|.|.=+.+.
T Consensus       122 t~~NdLTatv~Vf~D~  137 (536)
T d1s58a_         122 QVTDSATGRLCMLVDH  137 (536)
T ss_dssp             EECCCSSCCBCBEECS
T ss_pred             EEECCCCEEEEEEECC
T ss_conf             8715764078999768


No 14 
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein {Adeno-associated virus, aav-2 [TaxId: 272636]}
Probab=20.17  E-value=20  Score=12.46  Aligned_cols=25  Identities=8%  Similarity=-0.075  Sum_probs=11.9

Q ss_pred             CCCCEEEEECCCCCCCEEEEECCCCC
Q ss_conf             99775999648867883999325478
Q T0524           263 EQFKHWVVYNADGKQGYLCPEPYTWV  288 (325)
Q Consensus       263 ~~~~~~~v~~~~~~~~~vciEP~t~~  288 (325)
                      +.++.|.+=+|++ +=||=+=|+-+.
T Consensus       416 p~~Gg~gm~~PPp-qIFIK~~PvP~n  440 (519)
T d1lp3a_         416 PLMGGFGLKHPPP-QILIKNTPVPAN  440 (519)
T ss_dssp             CTTSSEEESSCSC-CEEEEECCCBCC
T ss_pred             CCCCCCCCCCCCC-EEEEECCCCCCC
T ss_conf             7777641579997-689864666889


Done!