Query T0525 APC41548.0, unknown, 215 residues
Match_columns 215
No_of_seqs 63 out of 65
Neff 4.1
Searched_HMMs 22458
Date Fri May 21 18:04:13 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0525.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0525.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a8e_A Hypothetical protein YK 100.0 0 0 577.6 19.4 195 16-215 6-210 (220)
2 1lyp_A CAP18; lipopolysacchari 30.0 27 0.0012 15.2 4.2 30 28-57 1-30 (32)
3 2keb_A DNA polymerase subunit 29.8 2.7 0.00012 21.3 -2.6 13 80-92 65-77 (101)
4 1efe_A Mini-proinsulin, M2PI; 29.7 27 0.0012 15.1 3.6 27 48-76 8-34 (60)
5 2o2k_A Methionine synthase; C- 28.4 29 0.0013 15.0 5.0 48 10-58 157-217 (355)
6 1kqr_A VP4; spike protein, out 27.4 17 0.00075 16.4 1.1 42 73-121 26-67 (179)
7 2aen_A Hemagglutinin, outer ca 24.4 20 0.0009 15.9 1.1 40 74-120 13-52 (164)
8 2kfd_A PRE-mRNA-processing pro 23.3 18 0.00082 16.2 0.7 36 41-89 7-42 (69)
9 1kri_A VP4; spike protein, out 22.8 23 0.001 15.6 1.2 42 73-121 26-67 (186)
10 3e56_A Putative uncharacterize 20.4 41 0.0018 14.1 2.0 38 98-135 32-72 (113)
No 1
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: d.296.1.1
Probab=100.00 E-value=0 Score=577.65 Aligned_cols=195 Identities=26% Similarity=0.361 Sum_probs=184.4
Q ss_pred CCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 07754200036886899999998405799999999988887630787422362200677788683102564077886434
Q T0525 16 LLPEWVSIFDIADFSGRMLRIRGDIRPALLRLASRLAELLNESPGPRPWYPHVASHMRRRVNPPPETWLALGPEKRGYKS 95 (215)
Q Consensus 16 ~~p~~f~vF~i~gLd~RM~aIr~~I~PKf~~lG~~~~p~Ls~~~g~e~~y~HVAKHaRRtvNPP~dTWvAfa~nKRGYKm 95 (215)
|+|+||+||+|+|||+||++||++|||||++||++|+|+||+++|+ +||+|||||+|||||||+|||||||+|||||||
T Consensus 6 Ft~~DF~~F~i~gLd~RM~aI~~~I~Pkf~~lg~~~~~~Ls~~~g~-~~~~HVAKHaRRtvNPP~dTWvAf~~nkRGYK~ 84 (220)
T 2a8e_A 6 FTEEDFNTFTIEGLDARMEVLKETVRPKLTALGEHFAPTLSALTGD-EMFPHVAKHARRSVNPPADSWVAFANSKRGYKK 84 (220)
T ss_dssp CCHHHHGGGGSCSHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSS-CCEEEECCCTTTCSSCCSCEEEEEESCSSCSTT
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
T ss_conf 7868776625898899999999876869999999999999875187-520357677512569982426875699986455
Q ss_pred CCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 74124565236368887520038456789999985334567788873785502242103544455--6798899999999
Q T0525 96 YAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQWKKKVGDLRDFGPVHDDPMADP--PKVEWDPRVFGER 173 (215)
Q Consensus 96 lPHFqIGl~~dhlFiw~avi~E~~~k~~~a~~~~~~~~~~l~~l~~~lP~d~~~s~DH~kp~~~~--~~~~~~l~~~~eR 173 (215)
+||||||||+||||||||||||+|+|++++..|..+ +++++++||+||+||.|||+|++.+ ++++++|++++||
T Consensus 85 ~PHfqiGl~~d~lFi~~avi~E~p~k~~~a~~~~~~----~~~l~~~LP~d~~~s~DH~k~~~~~~~~l~~~~l~~~~eR 160 (220)
T 2a8e_A 85 LPHFQIGLWESHVFVWFAIIYESPIKEEYGKLLEVN----QETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFER 160 (220)
T ss_dssp SCEEEEEECSSEEEEEEEECTTCTTHHHHHHHHHHT----HHHHHHHSCTTCEEESCTTSCCCEEGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCEEEEEEEEEECCCCHHHHHHHHHHC----CHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 763688864887899999850173569999999822----2689985998645232226654567765899999999999
Q ss_pred HHHHCCCCEEEEEECC--------HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8730631011211137--------27899999999999989999974069
Q T0525 174 LGSLKSASLDIGFRVT--------FDTSLAGIVKTIRTFDLLYAEAEKGS 215 (215)
Q Consensus 174 l~~VKKaElliG~~~~--------~D~~l~~i~~tf~~LlPlYk~a~~~s 215 (215)
|++||||||+||++|+ .|+|+++|++||++|+|||++++++|
T Consensus 161 l~~vKkaElliG~~~~~~d~~~~~~~~~~~~i~~tf~~LlPLY~l~~~~~ 210 (220)
T 2a8e_A 161 LQTVKKAELLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKVT 210 (220)
T ss_dssp HHHCTTCCEEEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98502233365443267432109989999999999999989999999999
No 2
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=30.02 E-value=27 Score=15.17 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 868999999984057999999999888876
Q T0525 28 DFSGRMLRIRGDIRPALLRLASRLAELLNE 57 (215)
Q Consensus 28 gLd~RM~aIr~~I~PKf~~lG~~~~p~Ls~ 57 (215)
||-.|....|..|.-|+..+|+.+...|..
T Consensus 1 glrkrlrkfrnkikeklkkigqkiqgllpk 30 (32)
T 1lyp_A 1 GLRKRLRKFRNKIKEKLKKIGQKIQGLLPK 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 978799999999999999998999845303
No 3
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprotein, polymorphism, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.76 E-value=2.7 Score=21.30 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=10.1
Q ss_pred CCCEEEECCCCCC
Q ss_conf 3102564077886
Q T0525 80 PETWLALGPEKRG 92 (215)
Q Consensus 80 ~dTWvAfa~nKRG 92 (215)
.+.|+|||.++.|
T Consensus 65 V~eWmAFs~S~~g 77 (101)
T 2keb_A 65 VGELIAFCTSTHK 77 (101)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999861699
No 4
>1efe_A Mini-proinsulin, M2PI; linker, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.1.1.1
Probab=29.69 E-value=27 Score=15.14 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCCC
Q ss_conf 99998888763078742236220067778
Q T0525 48 ASRLAELLNESPGPRPWYPHVASHMRRRV 76 (215)
Q Consensus 48 G~~~~p~Ls~~~g~e~~y~HVAKHaRRtv 76 (215)
|.+++..|.-..|+..||... ..||..
T Consensus 8 Gs~LVdaL~~VCG~RGfy~~p--~~~~~~ 34 (60)
T 1efe_A 8 GSHLVEALYLVCGERGFFYTP--KTRRYP 34 (60)
T ss_dssp HHHHHHHHHHHHCSSCCCCCC--CCCSSS
T ss_pred CHHHHHHHHHHHCCCCCCCCC--CCCCCC
T ss_conf 299999999997558865478--866776
No 5
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=28.38 E-value=29 Score=15.00 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=26.7
Q ss_pred HHHHHHCCCCC---------CEEECCCCHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHH
Q ss_conf 87786407754---------20003688689999999840579----999999998888763
Q T0525 10 ERLQDYLLPEW---------VSIFDIADFSGRMLRIRGDIRPA----LLRLASRLAELLNES 58 (215)
Q Consensus 10 ~~~~~~~~p~~---------f~vF~i~gLd~RM~aIr~~I~PK----f~~lG~~~~p~Ls~~ 58 (215)
-+|+||+.|+. |.| +..|.++..+.....=+-. ++.||..++.-|++.
T Consensus 157 lcLaDFiaP~~sg~~D~ig~faV-t~~g~~~~~~~~~~~~ddy~~i~~~~LadrLAEA~AE~ 217 (355)
T 2o2k_A 157 YCLSDFIAPLHSGIRDYLGLFAV-ACFGVEELSKAYEDDGDDYSSIMVKALGDRLAEAFAEE 217 (355)
T ss_dssp CCGGGGSCBGGGSCCEEEEEEEE-EEESHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCCCCCEEEEEEE-ECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11876428700288714746766-52335779999776117399999999999999999999
No 6
>1kqr_A VP4; spike protein, outer capsid, sialic acid, hemagglutinin, cell attachment, neutralization antigen, lectin, galectin fold, viral protein; HET: MNA; 1.40A {Rhesus rotavirus} SCOP: b.29.1.14 PDB: 2p3k_A* 2p3i_A* 2p3j_A* 2i2s_A*
Probab=27.35 E-value=17 Score=16.44 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCH
Q ss_conf 7778868310256407788643474124565236368887520038456
Q T0525 73 RRRVNPPPETWLALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEE 121 (215)
Q Consensus 73 RRtvNPP~dTWvAfa~nKRGYKmlPHFqIGl~~dhlFiw~avi~E~~~k 121 (215)
--+.|||.|=|+-++|+..|- |-=.-+.-=.|+|+|-=-||-
T Consensus 26 Ptsfnpp~~YWiLl~P~~~GV-------V~E~Tnntd~W~A~iLiePNv 67 (179)
T 1kqr_A 26 PTTFNPPVDYWMLLAPTAAGV-------VVEGTNNTDRWLATILVEPNV 67 (179)
T ss_dssp SEEECCCTTEEEEECCCSSEE-------EEEEECSSSCEEEEEEECSSE
T ss_pred CCCCCCCCCEEEEECCCCCCE-------EEEEECCCCEEEEEEEECCCC
T ss_conf 840179986489988899988-------999006867489999977998
No 7
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization antigen, spike protein, viral protein; 1.60A {Human rotavirus A} PDB: 2dwr_A
Probab=24.44 E-value=20 Score=15.93 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCC
Q ss_conf 77886831025640778864347412456523636888752003845
Q T0525 74 RRVNPPPETWLALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIE 120 (215)
Q Consensus 74 RtvNPP~dTWvAfa~nKRGYKmlPHFqIGl~~dhlFiw~avi~E~~~ 120 (215)
-+.|||.|=|+-++|+.-|- |.=..+.-=.|+|+|-=-||
T Consensus 13 tsf~pp~~YWiLl~P~~~GV-------V~E~Tnntd~W~a~iLiePN 52 (164)
T 2aen_A 13 TTFKPPNDYWLLISSNTNGV-------VYESTNNNDFWTAVIAVEPH 52 (164)
T ss_dssp EEECCCTTEEEEEECCSSEE-------EEEEECSSSCEEEEEEECSS
T ss_pred CEECCCCCEEEEECCCCCCE-------EEEEECCCCEEEEEEEECCC
T ss_conf 20169987599988898988-------99940788759999998899
No 8
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=23.33 E-value=18 Score=16.19 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEECCC
Q ss_conf 5799999999988887630787422362200677788683102564077
Q T0525 41 RPALLRLASRLAELLNESPGPRPWYPHVASHMRRRVNPPPETWLALGPE 89 (215)
Q Consensus 41 ~PKf~~lG~~~~p~Ls~~~g~e~~y~HVAKHaRRtvNPP~dTWvAfa~n 89 (215)
|-.|++--.+|.-.|... | +.++|||.+||-+-...
T Consensus 7 qr~lEqkK~yF~LlL~Rv------y-------~~~~~~kPetWe~A~~~ 42 (69)
T 2kfd_A 7 RRILEQKKHYFWLLLQRT------Y-------TKTGKPKPSTWDLASKE 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH------S-------CSSSSCCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------H-------CCCCCCCCHHHHHHHHH
T ss_conf 999999999999999999------8-------25899994259999999
No 9
>1kri_A VP4; spike protein, outer capsid, sialic acid, hemagglutinin, cell attachment, neutralization antigen, lectin, galectin fold, viral protein; NMR {Rhesus rotavirus} SCOP: b.29.1.14
Probab=22.84 E-value=23 Score=15.56 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=30.0
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCH
Q ss_conf 7778868310256407788643474124565236368887520038456
Q T0525 73 RRRVNPPPETWLALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEE 121 (215)
Q Consensus 73 RRtvNPP~dTWvAfa~nKRGYKmlPHFqIGl~~dhlFiw~avi~E~~~k 121 (215)
--+.|||.|=|+-++|+..|-- .=..+.-=.|+|+|-=.||-
T Consensus 26 Ptsf~pp~~YWiLl~P~~~gVV-------~E~Tnntd~W~A~iliePNv 67 (186)
T 1kri_A 26 PTTFNPPVDYWMLLAPTAAGVV-------VEGTNNTDRWLATILVEPNV 67 (186)
T ss_dssp CCEECCCSSEEEEECCSSSEEE-------EEEECSSSCEEEEEEECSSE
T ss_pred CCCCCCCCCEEEEECCCCCCEE-------EEEECCCCEEEEEEEECCCC
T ss_conf 8423799763899888999889-------99006867489999977998
No 10
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown function; 2.01A {Nostoc punctiforme pcc 73102}
Probab=20.43 E-value=41 Score=14.07 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=29.8
Q ss_pred CEEEEEECCEEEEEEEEECC---CCCHHHHHHHHHHHHHHH
Q ss_conf 12456523636888752003---845678999998533456
Q T0525 98 HSGVFIGGRGLSVRFILKDE---AIEERKNLGRWMSRSGPA 135 (215)
Q Consensus 98 HFqIGl~~dhlFiw~avi~E---~~~k~~~a~~~~~~~~~~ 135 (215)
.+|||+++--.+.-|-+|.| .-++++..+.++..+...
T Consensus 32 nl~vgvyeceihlkfrlieeksll~DrEQLlqvllDA~t~G 72 (113)
T 3e56_A 32 NLEVGVYECEIHLKFRLIEEKSLLSDREQLLQVLLDALTEG 72 (113)
T ss_dssp -CCCCEEEEEEEEEEEECCCGGGSSCHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEEEEEEEEHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 63556888887776653015531056999999999998727
Done!